Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR083G2684 Punica granatum HOM05D004692 ORTHO05D006291 7.0e-228 793.5 372 100.0
DCAR_015116 Daucus carota HOM05D004692 ORTHO05D006291 2.0e-182 642.5 374 78.3
Dinv36841 Davidia involucrata HOM05D004692 ORTHO05D006291 4.4e-182 641.3 372 78.2
Hma1.2p1_0744F.1_g211680 Hydrangea macrophylla HOM05D004692 ORTHO05D006291 6.4e-181 637.5 374 76.2
DCAR_015115 Daucus carota HOM05D004692 ORTHO05D006291 8.4e-181 637.1 374 77.5
CiPaw.15G118000 Carya illinoinensis HOM05D004692 ORTHO05D006291 1.4e-180 636.3 373 77.2
Prupe.5G211900 Prunus persica HOM05D004692 ORTHO05D006291 1.4e-180 636.3 377 77.2
QL10p021836 Quercus lobata HOM05D004692 ORTHO05D006291 5.4e-180 634.4 374 76.7
Cc04_g07930 Coffea canephora HOM05D004692 ORTHO05D006291 4.6e-179 631.3 373 76.9
Actinidia01418 Actinidia chinensis HOM05D004692 ORTHO05D006291 1.0e-178 630.2 383 76.0
Rhsim08G0150000 Rhododendron simsii HOM05D004692 ORTHO05D006291 1.0e-178 630.2 372 77.7
Manes.01G023900 Manihot esculenta HOM05D004692 ORTHO05D006291 5.1e-178 627.9 372 77.2
QL10p021731 Quercus lobata HOM05D004692 ORTHO05D006291 5.1e-178 627.9 374 76.5
RcHm_v2.0_Chr7g0184081 Rosa chinensis HOM05D004692 ORTHO05D006291 1.1e-177 626.7 369 77.0
Lj5A139T82 Lonicera japonica HOM05D004692 ORTHO05D006291 1.5e-177 626.3 374 76.5
FAN13G2141 Fragaria x ananassa HOM05D004692 ORTHO05D006291 1.9e-177 625.9 367 76.8
vmacro17655 Vaccinium macrocarpon HOM05D004692 ORTHO05D006291 4.3e-177 624.8 372 77.2
MD14G1218000 Malus domestica HOM05D004692 ORTHO05D006291 1.3e-176 623.2 377 76.4
Lsat_1_v5_gn_4_112840 Lactuca sativa HOM05D004692 ORTHO05D006291 2.1e-176 622.5 374 75.9
TWI81G0688 Tripterygium wilfordii HOM05D004692 ORTHO05D006291 2.1e-176 622.5 374 74.6
Oeu058039.1 Olea europaea HOM05D004692 ORTHO05D006291 4.8e-176 621.3 372 76.1
Eucgr.B00659 Eucalyptus grandis HOM05D004692 ORTHO05D006291 6.2e-176 620.9 367 78.2
MD06G1207500 Malus domestica HOM05D004692 ORTHO05D006291 6.2e-176 620.9 377 75.9
GSVIVG01008185001 Vitis vinifera HOM05D004692 ORTHO05D006291 8.1e-176 620.5 373 75.6
CSS0001909 Camellia sinensis var. sinensis HOM05D004692 ORTHO05D006291 1.1e-175 620.2 373 75.1
Sopen12g019180 Solanum pennellii HOM05D004692 ORTHO05D006291 1.1e-175 620.2 374 75.9
HanXRQChr16g0501991 Helianthus annuus HOM05D004692 ORTHO05D006291 1.4e-175 619.8 375 76.0
Ciclev10020592m.g Citrus clementina HOM05D004692 ORTHO05D006291 2.4e-175 619.0 374 76.5
EL10Ac5g11213 Beta vulgaris HOM05D004692 ORTHO05D006291 4.0e-175 618.2 373 74.3
Ah.11g047310 Amaranthus hybridus HOM05D004692 ORTHO05D006291 6.9e-175 617.5 369 75.6
Nn4g23609 Nelumbo nucifera HOM05D004692 ORTHO05D006291 9.0e-175 617.1 370 75.4
CAN.G471.4 Capsicum annuum HOM05D004692 ORTHO05D006291 1.2e-174 616.7 378 74.1
FvH4_5g13050 Fragaria vesca HOM05D004692 ORTHO05D006291 1.5e-174 616.3 367 75.5
PGSC0003DMG400000653 Solanum tuberosum HOM05D004692 ORTHO05D006291 1.5e-174 616.3 374 75.4
Atru.chr9.678 Acer truncatum HOM05D004692 ORTHO05D006291 2.0e-174 615.9 376 75.3
CSS0041638 Camellia sinensis var. sinensis HOM05D004692 ORTHO05D006291 2.0e-174 615.9 373 74.8
FAN18G3467 Fragaria x ananassa HOM05D004692 ORTHO05D006291 2.0e-174 615.9 367 75.5
Potri.015G055300 Populus trichocarpa HOM05D004692 ORTHO05D006291 2.6e-174 615.5 366 76.2
Peaxi162Scf00119g00017 Petunia axillaris HOM05D004692 ORTHO05D006291 3.4e-174 615.1 374 74.9
Solyc12g038970.3 Solanum lycopersicum HOM05D004692 ORTHO05D006291 3.4e-174 615.1 374 75.1
arahy.Tifrunner.gnm1.ann1.51KNRK Arachis hypogaea HOM05D004692 ORTHO05D006291 4.5e-174 614.8 368 75.5
CsaV3_1G003170 Cucumis sativus L. HOM05D004692 ORTHO05D006291 1.7e-173 612.8 378 74.1
Ah.02g120970 Amaranthus hybridus HOM05D004692 ORTHO05D006291 2.2e-173 612.5 369 75.3
MSTRG.22946 Avicennia marina HOM05D004692 ORTHO05D006291 2.9e-173 612.1 374 72.7
CANSAT80G0730 Cannabis sativa HOM05D004692 ORTHO05D006291 1.1e-172 610.1 374 72.7
MELO3C017264.2 Cucumis melo HOM05D004692 ORTHO05D006291 1.1e-172 610.1 376 73.7
Nitab4.5_0007617g0010 Nicotiana tabacum HOM05D004692 ORTHO05D006291 1.4e-172 609.8 382 73.3
THA.LOC104819389 Tarenaya hassleriana HOM05D004692 ORTHO05D006291 1.9e-172 609.4 374 73.8
Aqoxy3G00609 Aquilegia oxysepala HOM05D004692 ORTHO05D006291 3.2e-172 608.6 375 73.6
AUR62036914 Chenopodium quinoa HOM05D004692 ORTHO05D006291 4.2e-172 608.2 372 73.7
arahy.Tifrunner.gnm1.ann1.F96WR3 Arachis hypogaea HOM05D004692 ORTHO05D006291 7.1e-172 607.4 370 74.6
Hund09975 Selenicereus undatus HOM05D004692 ORTHO05D006291 7.1e-172 607.4 372 73.7
ClCG06G015290 Citrullus lanatus HOM05D004692 ORTHO05D006291 1.2e-171 606.7 371 73.9
Glyma.17G083400 Glycine max HOM05D004692 ORTHO05D006291 6.0e-171 604.4 374 73.3
arahy.Tifrunner.gnm1.ann1.6286TX Arachis hypogaea HOM05D004692 ORTHO05D006291 7.9e-171 604.0 378 73.3
Migut.J01255 Erythranthe guttata HOM05D004692 ORTHO05D006291 1.0e-170 603.6 375 71.7
Hund09942 Selenicereus undatus HOM05D004692 ORTHO05D006291 1.3e-170 603.2 393 70.2
AUR62032158 Chenopodium quinoa HOM05D004692 ORTHO05D006291 1.8e-170 602.8 373 72.9
Gohir.A07G057600 Gossypium hirsutum HOM05D004692 ORTHO05D006291 6.7e-170 600.9 373 73.5
ECA232G0381 Erigeron canadensis HOM05D004692 ORTHO05D006291 1.1e-169 600.1 376 73.4
Sed0023319 Sechium edule HOM05D004692 ORTHO05D006291 1.9e-169 599.4 374 73.5
Phvul.003G180900 Phaseolus vulgaris HOM05D004692 ORTHO05D006291 3.3e-169 598.6 373 71.8
Medtr4g112810 Medicago truncatula HOM05D004692 ORTHO05D006291 5.6e-169 597.8 373 72.4
Gohir.D07G062400 Gossypium hirsutum HOM05D004692 ORTHO05D006291 1.3e-168 596.7 373 72.9
SalBow5G2075 Salvia bowleyana HOM05D004692 ORTHO05D006291 1.3e-168 596.7 384 70.3
ATR0691G179 Amborella trichopoda HOM05D004692 ORTHO05D006291 2.8e-168 595.5 373 72.4
Lalb_Chr13g0302611 Lupinus albus HOM05D004692 ORTHO05D006291 3.7e-168 595.1 370 73.0
Lj4g0008523 Lotus japonicus HOM05D004692 ORTHO05D006291 4.8e-168 594.7 372 72.3
PSO017G3616 Papaver somniferum HOM05D004692 ORTHO05D006291 8.1e-168 594.0 372 72.8
TPR.G2028 Trifolium pratense HOM05D004692 ORTHO05D006291 1.8e-167 592.8 373 71.6
Gorai.001G065900 Gossypium raimondii HOM05D004692 ORTHO05D006291 4.0e-167 591.7 374 72.7
Psat4g044040 Pisum sativum HOM05D004692 ORTHO05D006291 1.2e-166 590.1 373 72.1
Sc12g0006990 Simmondsia chinensis HOM05D004692 ORTHO05D006291 1.2e-166 590.1 378 69.6
Ca_21742_v3 Cicer arietinum L. HOM05D004692 ORTHO05D006291 7.6e-166 587.4 373 71.8
SGA_v2.0_scaffold56G20037 Striga asiatica HOM05D004692 ORTHO05D006291 1.7e-165 586.3 357 74.2
PSO478G1466 Papaver somniferum HOM05D004692 ORTHO05D006291 1.9e-164 582.8 372 71.5
VMungo1215G1525 Vigna mungo HOM05D004692 ORTHO05D006291 9.3e-164 580.5 374 70.9
arahy.Tifrunner.gnm1.ann1.RJWR3V Arachis hypogaea HOM05D004692 ORTHO05D006291 2.1e-163 579.3 370 71.9
C03p04140 Brassica napus HOM05D004692 ORTHO05D006291 3.5e-163 578.6 373 70.0
Carub.0006s0707 Capsella rubella HOM05D004692 ORTHO05D006291 3.5e-163 578.6 374 70.3
CDE06G1750 Ceratophyllum demersum HOM05D004692 ORTHO05D006291 3.5e-163 578.6 372 70.2
A10p28500 Brassica napus HOM05D004692 ORTHO05D006291 1.8e-162 576.2 371 69.3
MBI14_g16236_MAGBIO Magnolia biondii HOM05D004692 ORTHO05D006291 2.3e-162 575.9 372 71.2
BraA03t09714Z Brassica rapa HOM05D004692 ORTHO05D006291 6.7e-162 574.3 374 69.3
A03p03660 Brassica napus HOM05D004692 ORTHO05D006291 1.9e-161 572.8 374 69.0
BolC3t12946H Brassica oleracea HOM05D004692 ORTHO05D006291 1.9e-161 572.8 374 69.0
CDE07G1308 Ceratophyllum demersum HOM05D004692 ORTHO05D006291 2.5e-161 572.4 375 68.8
HanXRQChr16g0501981 Helianthus annuus HOM05D004692 ORTHO05D006291 4.3e-161 571.6 426 65.0
FAN08G1512 Fragaria x ananassa HOM05D004692 ORTHO05D006291 5.7e-161 571.2 341 74.8
Sp6g34780 Schrenkiella parvula HOM05D004692 ORTHO05D006291 5.7e-161 571.2 371 68.2
Thhalv10013807m.g Eutrema salsugineum HOM05D004692 ORTHO05D006291 9.6e-161 570.5 371 69.3
AL6G18560 Arabidopsis lyrata HOM05D004692 ORTHO05D006291 1.3e-160 570.1 371 69.5
BcaNung05091 Brassica carinata HOM05D004692 ORTHO05D006291 2.1e-160 569.3 375 69.1
C09p68780 Brassica napus HOM05D004692 ORTHO05D006291 3.7e-160 568.5 372 69.1
Sabra15G0080100 Salix brachista HOM05D004692 ORTHO05D006291 4.8e-160 568.2 458 60.9
Actinidia10430 Actinidia chinensis HOM05D004692 ORTHO05D006291 1.8e-159 566.2 380 70.3
Aa31LG3G18370 Aethionema arabicum HOM05D004692 ORTHO05D006291 1.8e-159 566.2 405 64.2
BcaB08g37277 Brassica carinata HOM05D004692 ORTHO05D006291 2.4e-159 565.8 372 68.5
AT5G08170 Arabidopsis thaliana HOM05D004692 ORTHO05D006291 5.3e-159 564.7 371 68.5
SHI18993 Sapria himalayana HOM05D004692 ORTHO05D006291 5.0e-157 558.1 410 64.1
HPP92_019130 Vanilla planifolia HOM05D004692 ORTHO05D006291 1.1e-156 557.0 374 67.9
Nitab4.5_0000208g0050 Nicotiana tabacum HOM05D004692 ORTHO05D006291 1.0e-154 550.4 408 65.2
Thecc.03G112800 Theobroma cacao HOM05D004692 ORTHO05D006291 1.3e-154 550.1 365 70.1
Duzib205G0043 Durio zibethinus HOM05D004692 ORTHO05D006291 2.5e-153 545.8 370 68.9
BraA10t44898Z Brassica rapa HOM05D004692 ORTHO05D006291 6.3e-152 541.2 370 66.2
BolC9t59625H Brassica oleracea HOM05D004692 ORTHO05D006291 2.4e-151 539.3 371 66.8
Pp3c14_21790 Physcomitrium patens HOM05D004692 ORTHO05D006291 3.1e-151 538.9 369 66.4
unitig_26.g9673 Utricularia gibba HOM05D004692 ORTHO05D006291 3.1e-151 538.9 373 64.9
TAR374G0590 Trochodendron aralioides HOM05D004692 ORTHO05D006291 9.0e-151 537.3 343 70.8
Mapoly0016s0188 Marchantia polymorpha HOM05D004692 ORTHO05D006291 6.5e-149 531.2 373 63.3
HPP92_019140 Vanilla planifolia HOM05D004692 ORTHO05D006291 1.9e-148 529.6 361 67.0
BcaB01g05624 Brassica carinata HOM05D004692 ORTHO05D006291 7.9e-147 524.2 374 65.2
Os04g0466600 Oryza sativa ssp. japonica HOM05D004692 ORTHO05D006291 7.9e-147 524.2 374 61.8
SMO115G0272 Selaginella moellendorffii HOM05D004692 ORTHO05D006291 2.0e-145 519.6 364 64.6
AagrBONN_evm.TU.Sc2ySwM_117.2364 Anthoceros agrestis HOM05D004692 ORTHO05D006291 2.2e-144 516.2 374 63.4
Haze_18550 Corylus avellana HOM05D004692 ORTHO05D006291 3.2e-140 502.3 303 74.3
Zm00001eb424480 Zea mays HOM05D004692 ORTHO05D006291 6.7e-138 494.6 414 57.5
CBR_g22406 Chara braunii HOM05D004692 ORTHO05D006291 6.1e-131 471.5 391 59.1
Ca_25716_v3 Cicer arietinum L. HOM05D004692 ORTHO05D006291 9.7e-129 464.2 293 70.3
arahy.Tifrunner.gnm1.ann1.U185V9 Arachis hypogaea HOM05D004692 ORTHO05D006291 3.5e-126 455.7 370 60.3
CARHR205010 Cardamine hirsuta HOM05D004692 ORTHO05D006291 1.0e-114 417.5 268 69.0
Medtr4g110140 Medicago truncatula HOM05D004692 ORTHO05D006291 1.7e-104 383.6 385 51.7
Cfa019856 Carpinus fangiana HOM05D004692 ORTHO05D006291 1.3e-101 374.0 343 55.1
Sc12g0006960 Simmondsia chinensis HOM05D004692 ORTHO05D006291 3.7e-96 355.9 219 73.1
Pp3c13_22750 Physcomitrium patens HOM05D004692 ORTHO05D006291 7.8e-94 348.2 380 48.9
CSS0041488 Camellia sinensis var. sinensis HOM05D004692 ORTHO05D006291 4.4e-89 332.4 240 62.5
CSS0018290 Camellia sinensis var. sinensis HOM05D004692 ORTHO05D006291 5.8e-89 332.0 222 67.1
Cre01.g009350 Chlamydomonas reinhardtii HOM05D004692 ORTHO05D006291 4.6e-86 322.4 382 46.3
CSS0026593 Camellia sinensis var. sinensis HOM05D004692 ORTHO05D006291 6.0e-86 322.0 224 65.2
PRCOL_00005028 Prasinoderma coloniale HOM05D004692 ORTHO05D006291 2.8e-83 313.2 403 44.4
Hund10163 Selenicereus undatus HOM05D004692 ORTHO05D006291 2.9e-80 303.1 373 43.4
CSS0021853 Camellia sinensis var. sinensis HOM05D004692 ORTHO05D006291 1.3e-77 294.3 187 69.0
CSS0048768 Camellia sinensis var. sinensis HOM05D004692 ORTHO05D006291 4.7e-75 285.8 165 73.9
Cpa.g.c37454 Carica papaya HOM05D004692 ORTHO05D006291 2.1e-70 270.4 170 72.4
Lsat_1_v5_gn_5_119361 Lactuca sativa HOM05D004692 ORTHO05D006291 7.4e-60 235.3 171 64.9
Cre01.g053300 Chlamydomonas reinhardtii HOM05D004692 ORTHO05D006291 2.4e-50 203.8 475 31.4
Cpa.g.c37318 Carica papaya HOM05D004692 ORTHO05D006291 6.5e-40 169.1 94 73.4
C05p13090 Brassica napus HOM05D004692 ORTHO05D006291 4.1e-34 149.8 94 70.2
BcaC05g25434 Brassica carinata HOM05D004692 ORTHO05D006291 1.2e-33 148.3 94 69.1
FAN04G1239 Fragaria x ananassa HOM05D004692 ORTHO05D006291 2.0e-33 147.5 128 59.4
Ca_29974_v3 Cicer arietinum L. HOM05D000837 ORTHO05D008386 5.1e-29 132.9 78 78.2
CDE06G1955 Ceratophyllum demersum HOM05D004692 ORTHO05D019764 2.0e-25 120.9 332 28.0
Lsat_1_v5_gn_3_89601 Lactuca sativa HOM05D004692 ORTHO05D006291 2.6e-25 120.6 95 61.1
RcHm_v2.0_Chr2g0128461 Rosa chinensis HOM05D004692 ORTHO05D019764 1.0e-16 92.0 162 35.2
RcHm_v2.0_Chr2g0129061 Rosa chinensis HOM05D004692 ORTHO05D006291 5.5e-15 86.3 43 88.4
RcHm_v2.0_Chr4g0407261 Rosa chinensis HOM05D004692 ORTHO05D019764 2.7e-14 84.0 47 80.9
SGA_v2.0_scaffold26G11385 Striga asiatica HOM05D004692 ORTHO05D019764 6.1e-14 82.8 47 78.7
arahy.Tifrunner.gnm1.ann1.5N8491 Arachis hypogaea HOM05D004692 ORTHO05D019764 9.7e-12 75.5 46 71.7
RcHm_v2.0_Chr2g0164691 Rosa chinensis HOM05D004692 ORTHO05D019764 9.7e-12 75.5 39 82.1
Cpa.g.c47417 Carica papaya HOM05D004692 ORTHO05D117256 1.1e-07 62.0 31 90.3
BraA01t02993Z Brassica rapa HOM05D004692 ORTHO05D006291 2.1e-06 57.8 32 71.9
BraA09t36800Z Brassica rapa HOM05D004692 ORTHO05D006291 2.1e-06 57.8 32 71.9
Cpa.g.c45305 Carica papaya HOM05D004692 ORTHO05D006291 8.0e-06 55.8 29 75.9


User provided reference genes

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