Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR083G2464 Punica granatum HOM05D005033 ORTHO05D007005 8.0e-302 1039.6 529 100.0
Eucgr.J01030 Eucalyptus grandis HOM05D005033 ORTHO05D007005 2.3e-248 862.1 517 83.2
GSVIVG01034665001 Vitis vinifera HOM05D005033 ORTHO05D007005 2.4e-242 842.0 528 79.2
Actinidia22298 Actinidia chinensis HOM05D005033 ORTHO05D007005 2.4e-237 825.5 518 78.4
Duzib130G0002 Durio zibethinus HOM05D005033 ORTHO05D007005 2.4e-237 825.5 517 78.3
Atru.chr13.2088 Acer truncatum HOM05D005033 ORTHO05D007005 3.1e-237 825.1 512 78.5
Duzib138G0857 Durio zibethinus HOM05D005033 ORTHO05D007005 9.0e-237 823.5 517 78.3
Glyma.20G190200 Glycine max HOM05D005033 ORTHO05D007005 3.4e-236 821.6 521 77.5
ClCG09G006560 Citrullus lanatus HOM05D005033 ORTHO05D007005 4.9e-235 817.8 521 77.9
Hma1.2p1_0446F.1_g154670 Hydrangea macrophylla HOM05D005033 ORTHO05D007005 6.4e-235 817.4 514 78.8
VMungo0720G2563 Vigna mungo HOM05D005033 ORTHO05D007005 6.4e-235 817.4 521 77.5
Glyma.10G200300 Glycine max HOM05D005033 ORTHO05D007005 8.4e-235 817.0 521 77.0
Gohir.D07G190300 Gossypium hirsutum HOM05D005033 ORTHO05D007005 8.4e-235 817.0 518 77.2
Potri.008G029100 Populus trichocarpa HOM05D005033 ORTHO05D007005 5.5e-234 814.3 517 77.2
Gorai.001G212400 Gossypium raimondii HOM05D005033 ORTHO05D007005 2.1e-233 812.4 518 77.2
CsaV3_2G032850 Cucumis sativus L. HOM05D005033 ORTHO05D007005 3.5e-233 811.6 521 77.4
MELO3C019859.2 Cucumis melo HOM05D005033 ORTHO05D007005 1.3e-232 809.7 521 77.5
Gohir.A07G183600 Gossypium hirsutum HOM05D005033 ORTHO05D007005 2.5e-231 805.4 518 76.6
Peaxi162Scf00450g00616 Petunia axillaris HOM05D005033 ORTHO05D007005 1.3e-230 803.1 514 77.0
Phvul.007G144800 Phaseolus vulgaris HOM05D005033 ORTHO05D007005 1.4e-229 799.7 521 75.4
TWI34G0149 Tripterygium wilfordii HOM05D005033 ORTHO05D007005 3.1e-229 798.5 517 77.6
Sabra10G0180300 Salix brachista HOM05D005033 ORTHO05D007005 4.0e-229 798.1 521 75.4
Ca_10465_v3 Cicer arietinum L. HOM05D005033 ORTHO05D007005 5.3e-229 797.7 520 76.2
Thecc.01G170700 Theobroma cacao HOM05D005033 ORTHO05D007005 5.3e-229 797.7 519 76.9
Prupe.2G096600 Prunus persica HOM05D005033 ORTHO05D007005 3.4e-228 795.0 524 76.0
Lj5g0024582 Lotus japonicus HOM05D005033 ORTHO05D007005 4.9e-227 791.2 521 75.2
Solyc05g008190.3 Solanum lycopersicum HOM05D005033 ORTHO05D007005 4.9e-227 791.2 517 74.9
CAN.G1334.3 Capsicum annuum HOM05D005033 ORTHO05D007005 1.1e-226 790.0 517 74.9
Potri.010G232500 Populus trichocarpa HOM05D005033 ORTHO05D007005 1.9e-226 789.3 517 75.2
Sopen05g004030 Solanum pennellii HOM05D005033 ORTHO05D007005 1.9e-226 789.3 517 74.9
Nitab4.5_0004816g0020 Nicotiana tabacum HOM05D005033 ORTHO05D007005 2.5e-226 788.9 530 74.3
TAR633G0665 Trochodendron aralioides HOM05D005033 ORTHO05D007005 5.5e-226 787.7 517 76.2
Cc02_g10440 Coffea canephora HOM05D005033 ORTHO05D007005 9.3e-226 786.9 510 75.3
Lalb_Chr21g0313111 Lupinus albus HOM05D005033 ORTHO05D007005 1.2e-225 786.6 521 75.6
Ciclev10003719m.g Citrus clementina HOM05D005033 ORTHO05D007005 2.1e-225 785.8 517 76.4
PGSC0003DMG400030544 Solanum tuberosum HOM05D005033 ORTHO05D007005 6.7e-224 780.8 510 74.7
Nn8g40819 Nelumbo nucifera HOM05D005033 ORTHO05D007005 2.5e-223 778.9 517 75.8
Sc09g0005810 Simmondsia chinensis HOM05D005033 ORTHO05D007005 5.7e-223 777.7 521 73.9
MD07G1075700 Malus domestica HOM05D005033 ORTHO05D007005 7.4e-223 777.3 524 73.7
CSS0020475 Camellia sinensis var. sinensis HOM05D005033 ORTHO05D007005 2.1e-222 775.8 517 75.4
Hund09612 Selenicereus undatus HOM05D005033 ORTHO05D007005 1.4e-221 773.1 517 74.9
CANSAT11G2161 Cannabis sativa HOM05D005033 ORTHO05D007005 1.2e-220 770.0 521 74.1
Lj4A548T13 Lonicera japonica HOM05D005033 ORTHO05D007005 2.0e-220 769.2 521 73.1
Psat6g174240 Pisum sativum HOM05D005033 ORTHO05D007005 5.9e-220 767.7 521 72.9
Medtr1g090877 Medicago truncatula HOM05D005033 ORTHO05D007005 1.3e-219 766.5 521 72.9
arahy.Tifrunner.gnm1.ann1.BLA122 Arachis hypogaea HOM05D005033 ORTHO05D007005 1.4e-218 763.1 516 72.3
MSTRG.405 Avicennia marina HOM05D005033 ORTHO05D007005 3.2e-218 761.9 518 73.7
AUR62018476 Chenopodium quinoa HOM05D005033 ORTHO05D007005 3.2e-218 761.9 526 71.7
QL05p060417 Quercus lobata HOM05D005033 ORTHO05D007005 9.3e-218 760.4 522 74.3
Sed0023623 Sechium edule HOM05D005033 ORTHO05D007005 9.3e-218 760.4 522 74.5
MD13G1165600 Malus domestica HOM05D005033 ORTHO05D007005 2.3e-216 755.7 527 73.2
Lj4A576G37 Lonicera japonica HOM05D005033 ORTHO05D007005 3.0e-216 755.4 521 72.4
Manes.04G062300 Manihot esculenta HOM05D005033 ORTHO05D007005 7.4e-215 750.7 517 71.6
Aqoxy7G00894 Aquilegia oxysepala HOM05D005033 ORTHO05D007005 1.3e-214 750.0 517 72.0
DCAR_019312 Daucus carota HOM05D005033 ORTHO05D007005 2.8e-214 748.8 521 70.2
Aqoxy6G00730 Aquilegia oxysepala HOM05D005033 ORTHO05D007005 2.4e-213 745.7 516 71.9
Sed0004918 Sechium edule HOM05D005033 ORTHO05D007005 1.5e-212 743.0 521 71.8
ECA236G1450 Erigeron canadensis HOM05D005033 ORTHO05D007005 2.6e-212 742.3 515 71.8
EL10Ac3g05920 Beta vulgaris HOM05D005033 ORTHO05D007005 5.9e-212 741.1 514 70.8
Sp3g08810 Schrenkiella parvula HOM05D005033 ORTHO05D007005 5.9e-212 741.1 521 72.2
CiPaw.12G008100 Carya illinoinensis HOM05D005033 ORTHO05D007005 7.7e-212 740.7 520 72.9
arahy.Tifrunner.gnm1.ann1.FAT33H Arachis hypogaea HOM05D005033 ORTHO05D007005 1.3e-211 740.0 569 65.7
COL.COLO4_07176 Corchorus olitorius HOM05D005033 ORTHO05D007005 8.5e-211 737.3 575 66.3
BolC1t05387H Brassica oleracea HOM05D005033 ORTHO05D007005 1.1e-210 736.9 519 71.5
BraA05t22654Z Brassica rapa HOM05D005033 ORTHO05D007005 1.4e-210 736.5 519 72.1
BcaNung06294 Brassica carinata HOM05D005033 ORTHO05D007005 2.5e-210 735.7 519 70.9
C05p57510 Brassica napus HOM05D005033 ORTHO05D004473 4.2e-210 734.9 519 71.7
A01p41690 Brassica napus HOM05D005033 ORTHO05D004473 1.2e-209 733.4 520 71.3
CARHR085050 Cardamine hirsuta HOM05D005033 ORTHO05D007005 3.6e-209 731.9 525 71.4
BolC5t34408H Brassica oleracea HOM05D005033 ORTHO05D004473 4.6e-209 731.5 515 72.0
Rhsim02G0215300 Rhododendron simsii HOM05D005033 ORTHO05D007005 6.1e-209 731.1 563 68.2
BcaB04g21233 Brassica carinata HOM05D005033 ORTHO05D007005 1.0e-208 730.3 519 71.3
BcaNung04933 Brassica carinata HOM05D005033 ORTHO05D007005 3.0e-208 728.8 527 70.4
A05p38630 Brassica napus HOM05D005033 ORTHO05D004473 5.1e-208 728.0 519 71.5
FAN10G0702 Fragaria x ananassa HOM05D005033 ORTHO05D007005 2.8e-206 722.2 523 70.4
Haze_05486 Corylus avellana HOM05D005033 ORTHO05D007005 1.4e-205 719.9 612 63.7
RcHm_v2.0_Chr1g0336741 Rosa chinensis HOM05D005033 ORTHO05D007005 1.8e-205 719.5 519 70.7
BraA01t04244Z Brassica rapa HOM05D005033 ORTHO05D007005 2.4e-205 719.2 475 74.7
Migut.F01668 Erythranthe guttata HOM05D005033 ORTHO05D007005 5.3e-205 718.0 520 69.6
Nitab4.5_0006512g0050 Nicotiana tabacum HOM05D005033 ORTHO05D007005 6.9e-205 717.6 525 69.9
FAN03G1010 Fragaria x ananassa HOM05D005033 ORTHO05D007005 3.4e-204 715.3 523 69.8
Ah.01g017010 Amaranthus hybridus HOM05D005033 ORTHO05D007005 1.7e-203 713.0 519 69.0
HanXRQChr04g0126221 Helianthus annuus HOM05D005033 ORTHO05D007005 6.5e-203 711.1 517 67.9
CSS0041797 Camellia sinensis var. sinensis HOM05D005033 ORTHO05D007005 1.1e-202 710.3 518 70.8
THA.LOC104826968 Tarenaya hassleriana HOM05D005033 ORTHO05D007005 2.5e-202 709.1 433 78.3
vmacro04570 Vaccinium macrocarpon HOM05D005033 ORTHO05D007005 2.5e-202 709.1 571 66.2
AL3G21930 Arabidopsis lyrata HOM05D005033 ORTHO05D007005 1.2e-201 706.8 521 69.5
SGA_v2.0_scaffold144G35834 Striga asiatica HOM05D005033 ORTHO05D007005 1.4e-200 703.4 525 67.8
TPR.G37792 Trifolium pratense HOM05D005033 ORTHO05D007005 1.8e-200 703.0 521 68.3
Carub.0003s0977 Capsella rubella HOM05D005033 ORTHO05D007005 6.7e-200 701.0 521 68.7
CDE08G1035 Ceratophyllum demersum HOM05D005033 ORTHO05D007005 1.1e-199 700.3 515 67.8
AT3G10530 Arabidopsis thaliana HOM05D005033 ORTHO05D007005 2.0e-199 699.5 521 69.1
FvH4_7g06900 Fragaria vesca HOM05D005033 ORTHO05D007005 2.2e-198 696.0 523 68.3
Thhalv10020478m.g Eutrema salsugineum HOM05D005033 ORTHO05D007005 6.3e-198 694.5 522 67.2
unitig_899.g15062 Utricularia gibba HOM05D005033 ORTHO05D007005 3.8e-195 685.3 521 68.3
HPP92_022999 Vanilla planifolia HOM05D005033 ORTHO05D007005 2.5e-194 682.6 520 66.2
Actinidia13190 Actinidia chinensis HOM05D005033 ORTHO05D007005 7.2e-194 681.0 432 77.1
PSO063G4428 Papaver somniferum HOM05D005033 ORTHO05D007005 1.2e-191 673.7 507 66.9
Dinv31275 Davidia involucrata HOM05D005033 ORTHO05D007005 1.3e-190 670.2 450 74.0
PSO339G5947 Papaver somniferum HOM05D005033 ORTHO05D007005 8.2e-190 667.5 505 67.3
Aa31LG4G2160 Aethionema arabicum HOM05D005033 ORTHO05D007005 1.8e-189 666.4 529 65.0
Oeu027297.1 Olea europaea HOM05D005033 ORTHO05D007005 7.7e-188 661.0 557 63.0
FAN06G3772 Fragaria x ananassa HOM05D005033 ORTHO05D007005 4.7e-185 651.7 523 65.8
FAN01G1898 Fragaria x ananassa HOM05D005033 ORTHO05D007005 1.4e-184 650.2 523 65.6
Lsat_1_v5_gn_5_142541 Lactuca sativa HOM05D005033 ORTHO05D007005 2.6e-183 646.0 495 64.4
Zm00001eb272000 Zea mays HOM05D005033 ORTHO05D007005 4.4e-183 645.2 509 64.6
SHI01926 Sapria himalayana HOM05D005033 ORTHO05D007005 5.7e-183 644.8 564 59.4
CSS0012290 Camellia sinensis var. sinensis HOM05D005033 ORTHO05D007005 1.2e-180 637.1 507 67.5
ATR0598G298 Amborella trichopoda HOM05D005033 ORTHO05D007005 1.5e-175 620.2 512 61.7
Os01g0183100 Oryza sativa ssp. japonica HOM05D005033 ORTHO05D007005 2.3e-171 606.3 523 59.7
Sc12g0008670 Simmondsia chinensis HOM05D005033 ORTHO05D007005 3.8e-171 605.5 409 73.8
Nitab4.5_0004816g0100 Nicotiana tabacum HOM05D005033 ORTHO05D007005 2.2e-166 589.7 455 67.0
PSO591G0084 Papaver somniferum HOM05D005033 ORTHO05D007005 1.1e-160 570.9 432 66.4
BcaC05g29453 Brassica carinata HOM05D005033 ORTHO05D004473 3.1e-160 569.3 444 65.5
Ciclev10003777m.g Citrus clementina HOM05D005033 ORTHO05D007005 4.6e-156 555.4 506 61.1
AagrBONN_evm.TU.Sc2ySwM_362.274 Anthoceros agrestis HOM05D005033 ORTHO05D007005 4.9e-134 482.3 482 53.3
Prupe.1G365200 Prunus persica HOM05D005033 ORTHO05D007005 1.1e-133 481.1 444 61.5
Mapoly0082s0024 Marchantia polymorpha HOM05D005033 ORTHO05D007005 2.4e-133 479.9 508 50.4
SMO367G1111 Selaginella moellendorffii HOM05D005033 ORTHO05D007005 1.2e-132 477.6 518 48.8
Pp3c1_3590 Physcomitrium patens HOM05D005033 ORTHO05D007005 1.3e-129 467.6 528 47.0
BcaC05g29452 Brassica carinata HOM05D005033 ORTHO05D007005 1.9e-122 443.7 329 69.6
Cre12.g502800 Chlamydomonas reinhardtii HOM05D005033 ORTHO05D007005 9.6e-122 441.4 524 45.8
AUR62020948 Chenopodium quinoa HOM05D005033 ORTHO05D007005 2.4e-120 436.8 310 70.3
CBR_g12704 Chara braunii HOM05D005033 ORTHO05D007005 2.6e-119 433.3 471 47.3
MCO04G094 Micromonas commoda HOM05D005033 ORTHO05D007005 7.1e-117 425.2 506 44.1
Nn2g13935 Nelumbo nucifera HOM05D005033 ORTHO05D007005 9.3e-109 398.3 271 74.5
Cpa.g.sc116.23 Carica papaya HOM05D005033 ORTHO05D007005 3.5e-108 396.4 517 48.2
PRCOL_00001195 Prasinoderma coloniale HOM05D005033 ORTHO05D007005 1.9e-106 390.6 500 43.8
SEGI_20556 Sequoiadendron giganteum HOM05D005033 ORTHO05D007005 2.1e-100 370.5 358 53.1
Thhalv10016037m.g Eutrema salsugineum HOM05D005033 ORTHO05D007005 1.8e-99 367.5 316 60.8
Peaxi162Scf00159g00012 Petunia axillaris HOM05D005033 ORTHO05D007005 6.7e-99 365.5 305 62.6
Cfa025315 Carpinus fangiana HOM05D005033 ORTHO05D007005 5.9e-79 299.3 531 35.6
Actinidia36730 Actinidia chinensis HOM05D005033 ORTHO05D007005 1.3e-46 191.8 105 85.7
RcHm_v2.0_Chr1g0336811 Rosa chinensis HOM05D005033 ORTHO05D007005 7.1e-32 142.9 125 59.2
Peaxi162Scf00159g00111 Petunia axillaris HOM05D005033 ORTHO05D007005 5.8e-26 123.2 75 81.3
CAN.G1393.2 Capsicum annuum HOM05D005033 ORTHO05D005387 3.9e-22 110.5 145 47.6
RcHm_v2.0_Chr1g0336801 Rosa chinensis HOM05D005033 ORTHO05D007005 5.3e-19 100.1 67 65.7
MD05G1224900 Malus domestica HOM05D005033 ORTHO05D007005 1.7e-17 95.1 59 81.4
MD09G1267900 Malus domestica HOM05D005033 ORTHO05D007005 2.1e-15 88.2 55 80.0
Aa31sc66G30 Aethionema arabicum HOM05D005033 ORTHO05D007005 1.0e-14 85.9 126 42.1
MD08G1003300 Malus domestica HOM05D005033 ORTHO05D036613 4.3e-13 80.5 63 60.3
MD08G1003200 Malus domestica HOM05D005033 ORTHO05D245307 4.0e-11 73.9 70 52.9
CAN.G220.75 Capsicum annuum HOM05D003335 ORTHO05D003853 4.2e-08 63.9 164 29.3
Solyc09g090660.3 Solanum lycopersicum HOM05D003335 ORTHO05D003853 9.3e-08 62.8 164 29.3
Sopen09g033600 Solanum pennellii HOM05D003335 ORTHO05D003853 9.3e-08 62.8 164 29.3
PGSC0003DMG400017196 Solanum tuberosum HOM05D003335 ORTHO05D003853 9.3e-08 62.8 164 29.3
THA.LOC104816006 Tarenaya hassleriana HOM05D003335 ORTHO05D003853 1.2e-07 62.4 234 26.5
arahy.Tifrunner.gnm1.ann1.0Y6UED Arachis hypogaea HOM05D003335 ORTHO05D003853 2.1e-07 61.6 164 25.0
arahy.Tifrunner.gnm1.ann1.3R4EAX Arachis hypogaea HOM05D003335 ORTHO05D003853 2.1e-07 61.6 164 25.0
arahy.Tifrunner.gnm1.ann1.5U8ZY7 Arachis hypogaea HOM05D005033 ORTHO05D083851 2.7e-07 61.2 57 52.6
C08p01190 Brassica napus HOM05D003335 ORTHO05D003853 2.7e-07 61.2 180 26.7
SHI00771 Sapria himalayana HOM05D003335 ORTHO05D003853 2.7e-07 61.2 227 25.6
arahy.Tifrunner.gnm1.ann1.R7HTY3 Arachis hypogaea HOM05D002393 ORTHO05D002845 3.5e-07 60.8 49 59.2
Gohir.D01G023421 Gossypium hirsutum HOM05D003335 ORTHO05D003853 3.5e-07 60.8 163 28.2
Carub.0004s1496 Capsella rubella HOM05D003335 ORTHO05D003853 6.0e-07 60.1 145 28.3
Gorai.002G026500 Gossypium raimondii HOM05D003335 ORTHO05D003853 6.0e-07 60.1 164 28.7
Peaxi162Scf00153g01716 Petunia axillaris HOM05D003335 ORTHO05D003853 6.0e-07 60.1 163 26.4
MBI02_g01118_MAGBIO Magnolia biondii HOM05D000464 ORTHO05D006292 1.8e-06 58.5 254 20.9
BcaB06g28676 Brassica carinata HOM05D003335 ORTHO05D003853 2.3e-06 58.2 157 26.8
Cfa022092 Carpinus fangiana HOM05D000164 ORTHO05D121826 2.3e-06 58.2 198 28.8
Lj6g0012574 Lotus japonicus HOM05D003335 ORTHO05D003853 2.3e-06 58.2 164 26.2
Nitab4.5_0002751g0050 Nicotiana tabacum HOM05D003335 ORTHO05D003853 2.3e-06 58.2 164 28.0
HPP92_007255 Vanilla planifolia HOM05D003335 ORTHO05D003853 3.0e-06 57.8 176 25.6
Medtr4g088675 Medicago truncatula HOM05D000836 ORTHO05D000709 6.7e-06 56.6 144 27.1


User provided reference genes

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