Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR083G0988 Punica granatum HOM05D006512 ORTHO05D008027 0.0e+00 1185.2 812 100.0
Atru.chr2.3489 Acer truncatum HOM05D006512 ORTHO05D008027 4.0e-151 539.7 531 56.9
TWI39G1152 Tripterygium wilfordii HOM05D006512 ORTHO05D008027 5.7e-150 535.8 555 56.4
Duzib213G0172 Durio zibethinus HOM05D006512 ORTHO05D008027 4.9e-149 532.7 531 58.0
Prupe.4G218000 Prunus persica HOM05D006512 ORTHO05D008027 3.2e-148 530.0 575 54.4
Gohir.D05G372700 Gossypium hirsutum HOM05D006512 ORTHO05D008027 4.1e-148 529.6 553 56.1
CiPaw.12G131800 Carya illinoinensis HOM05D006512 ORTHO05D008027 2.3e-146 523.9 667 49.9
Ciclev10007420m.g Citrus clementina HOM05D006512 ORTHO05D008027 8.6e-146 521.9 526 56.8
CSS0043474 Camellia sinensis var. sinensis HOM05D006512 ORTHO05D008027 1.5e-145 521.2 546 57.5
Cpa.g.sc12.276 Carica papaya HOM05D006512 ORTHO05D008027 2.6e-142 510.4 531 56.7
Haze_09710 Corylus avellana HOM05D006512 ORTHO05D008027 2.2e-141 507.3 684 47.8
arahy.Tifrunner.gnm1.ann1.WH2E03 Arachis hypogaea HOM05D006512 ORTHO05D008027 1.4e-140 504.6 528 55.7
FAN11G0896 Fragaria x ananassa HOM05D006512 ORTHO05D008027 1.9e-140 504.2 565 52.7
arahy.Tifrunner.gnm1.ann1.DSL29X Arachis hypogaea HOM05D006512 ORTHO05D008027 2.4e-140 503.8 528 55.5
Thecc.07G032200 Theobroma cacao HOM05D006512 ORTHO05D008027 1.2e-139 501.5 545 55.2
TPR.G1164 Trifolium pratense HOM05D006512 ORTHO05D008027 3.5e-139 500.0 543 52.7
Medtr5g093560 Medicago truncatula HOM05D006512 ORTHO05D008027 2.3e-138 497.3 522 54.6
Glyma.02G293200 Glycine max HOM05D006512 ORTHO05D008027 2.5e-137 493.8 530 54.9
CANSAT11G0281 Cannabis sativa HOM05D006512 ORTHO05D008027 3.3e-137 493.4 538 53.7
Sabra16G0234800 Salix brachista HOM05D006512 ORTHO05D008027 3.3e-137 493.4 524 55.5
CAN.G492.3 Capsicum annuum HOM05D006512 ORTHO05D008027 4.3e-137 493.0 537 54.4
TAR626G0449 Trochodendron aralioides HOM05D006512 ORTHO05D008027 1.2e-136 491.5 544 54.6
FAN21G3399 Fragaria x ananassa HOM05D006512 ORTHO05D008027 1.1e-135 488.4 585 50.8
Sopen10g002210 Solanum pennellii HOM05D006512 ORTHO05D008027 3.1e-135 486.9 552 51.8
vmacro02216 Vaccinium macrocarpon HOM05D006512 ORTHO05D008027 2.6e-134 483.8 587 51.3
VMungo0647G0540 Vigna mungo HOM05D006512 ORTHO05D008027 4.9e-133 479.6 530 53.6
PGSC0003DMG400014387 Solanum tuberosum HOM05D006512 ORTHO05D008027 8.3e-133 478.8 539 52.1
COL.COLO4_09692 Corchorus olitorius HOM05D006512 ORTHO05D008027 1.4e-132 478.0 541 54.5
Glyma.14G021200 Glycine max HOM05D006512 ORTHO05D008027 1.9e-132 477.6 530 53.4
Nitab4.5_0001393g0060 Nicotiana tabacum HOM05D006512 ORTHO05D008027 4.1e-132 476.5 537 52.0
Nn1g07218 Nelumbo nucifera HOM05D006512 ORTHO05D008027 5.4e-132 476.1 553 51.9
Lj1C877G6 Lonicera japonica HOM05D006512 ORTHO05D008027 4.3e-129 466.5 541 54.2
Actinidia32260 Actinidia chinensis HOM05D006512 ORTHO05D008027 1.8e-127 461.1 530 53.2
PSO541G1419 Papaver somniferum HOM05D006512 ORTHO05D008027 5.2e-127 459.5 545 51.0
THA.LOC104811621 Tarenaya hassleriana HOM05D006512 ORTHO05D008027 5.2e-127 459.5 530 52.5
Nitab4.5_0004829g0090 Nicotiana tabacum HOM05D006512 ORTHO05D008027 6.8e-127 459.1 558 49.5
FAN16G2871 Fragaria x ananassa HOM05D006512 ORTHO05D008027 1.5e-126 458.0 563 49.2
ECA236G0056 Erigeron canadensis HOM05D006512 ORTHO05D008027 2.9e-125 453.8 526 52.5
Peaxi162Scf01615g00010 Petunia axillaris HOM05D006512 ORTHO05D008027 1.1e-124 451.8 651 47.3
Lsat_1_v5_gn_7_111120 Lactuca sativa HOM05D006512 ORTHO05D008027 1.4e-124 451.4 523 53.3
Carub.0008s1539 Capsella rubella HOM05D006512 ORTHO05D008027 9.2e-124 448.7 649 45.5
Oeu024915.1 Olea europaea HOM05D006512 ORTHO05D008027 9.2e-124 448.7 521 53.0
RcHm_v2.0_Chr5g0040811 Rosa chinensis HOM05D006512 ORTHO05D008027 4.6e-123 446.4 586 47.6
Ah.06g182620 Amaranthus hybridus HOM05D006512 ORTHO05D008027 1.9e-121 441.0 537 51.8
Migut.H01809 Erythranthe guttata HOM05D006512 ORTHO05D008027 3.6e-120 436.8 521 50.5
FAN25G1139 Fragaria x ananassa HOM05D006512 ORTHO05D008027 3.6e-120 436.8 583 47.0
C02p16450 Brassica napus HOM05D006512 ORTHO05D008027 4.7e-120 436.4 532 50.9
FAN25G2516 Fragaria x ananassa HOM05D006512 ORTHO05D008027 8.1e-120 435.6 586 46.9
A02p09890 Brassica napus HOM05D006512 ORTHO05D008027 1.1e-119 435.3 525 50.9
Aqoxy1G03389_Aqoxy1G03390 Aquilegia oxysepala HOM05D006512 ORTHO05D008027 2.0e-118 431.0 548 48.5
BcaC03g14267 Brassica carinata HOM05D006512 ORTHO05D008027 4.4e-118 429.9 532 49.8
BolC2t07744H Brassica oleracea HOM05D006512 ORTHO05D008027 4.4e-118 429.9 533 50.5
Thhalv10015403m.g Eutrema salsugineum HOM05D006512 ORTHO05D008027 2.2e-117 427.6 530 49.6
AL8G30600 Arabidopsis lyrata HOM05D006512 ORTHO05D008027 1.1e-116 425.2 568 47.4
Hund23227 Selenicereus undatus HOM05D006512 ORTHO05D008027 9.3e-116 422.2 624 45.4
Aa31LG5G12080 Aethionema arabicum HOM05D006512 ORTHO05D008027 5.6e-113 412.9 553 47.2
BcaB05g22180 Brassica carinata HOM05D006512 ORTHO05D008027 2.1e-112 411.0 531 48.4
MBI07_g09094_MAGBIO Magnolia biondii HOM05D006512 ORTHO05D008027 1.3e-109 401.7 595 45.2
BraA02t06053Z Brassica rapa HOM05D006512 ORTHO05D008027 2.1e-107 394.4 557 46.0
AUR62020400 Chenopodium quinoa HOM05D006512 ORTHO05D008027 2.7e-107 394.0 521 49.5
EL10Ac4g07766 Beta vulgaris HOM05D006512 ORTHO05D008027 7.9e-107 392.5 565 46.2
AUR62015819 Chenopodium quinoa HOM05D006512 ORTHO05D008027 1.3e-104 385.2 462 51.5
Phvul.008G270300 Phaseolus vulgaris HOM05D006512 ORTHO05D008027 1.3e-104 385.2 437 51.0
SGA_v2.0_scaffold172G39010 Striga asiatica HOM05D006512 ORTHO05D008027 7.6e-102 375.9 542 45.4
DCAR_022584 Daucus carota HOM05D006512 ORTHO05D008027 2.1e-99 367.9 527 46.1
Gorai.009G441100 Gossypium raimondii HOM05D006512 ORTHO05D008027 3.9e-98 363.6 407 53.8
ATR0585G019 Amborella trichopoda HOM05D006512 ORTHO05D008027 6.7e-98 362.8 558 43.4
LjContig00272g0012578 Lotus japonicus HOM05D006512 ORTHO05D008027 6.7e-98 362.8 409 50.4
Potri.001G356800 Populus trichocarpa HOM05D006512 ORTHO05D008027 3.1e-95 354.0 395 53.2
Gohir.A04G013500 Gossypium hirsutum HOM05D006512 ORTHO05D008027 6.9e-95 352.8 376 55.6
HPP92_009832 Vanilla planifolia HOM05D006512 ORTHO05D008027 9.0e-95 352.4 530 46.6
unitig_899.g15285 Utricularia gibba HOM05D006512 ORTHO05D008027 5.8e-94 349.7 585 43.2
Eucgr.F00738 Eucalyptus grandis HOM05D006512 ORTHO05D008027 1.7e-93 348.2 374 55.9
Manes.03G133700 Manihot esculenta HOM05D006512 ORTHO05D008027 2.5e-92 344.4 387 52.7
QL08p009135 Quercus lobata HOM05D006512 ORTHO05D008027 6.0e-91 339.7 359 54.9
Oeu041836.1 Olea europaea HOM05D006512 ORTHO05D008027 1.3e-90 338.6 417 52.5
CSS0048002 Camellia sinensis var. sinensis HOM05D006512 ORTHO05D008027 8.7e-90 335.9 384 53.9
FvH4_3g23160 Fragaria vesca HOM05D006512 ORTHO05D008027 1.1e-89 335.5 420 49.3
Actinidia05076 Actinidia chinensis HOM05D006512 ORTHO05D008027 6.3e-88 329.7 360 54.7
Duzib170G0430 Durio zibethinus HOM05D006512 ORTHO05D008027 1.4e-87 328.6 385 53.8
Solyc10g006260.3 Solanum lycopersicum HOM05D006512 ORTHO05D008027 1.4e-87 328.6 394 49.5
PSO675G4144 Papaver somniferum HOM05D006512 ORTHO05D008027 1.9e-84 318.2 400 49.5
Actinidia26683 Actinidia chinensis HOM05D006512 ORTHO05D008027 3.2e-84 317.4 358 53.4
Ca_06341_v3 Cicer arietinum L. HOM05D006512 ORTHO05D008027 1.0e-82 312.4 406 48.3
SHI26585 Sapria himalayana HOM05D006512 ORTHO05D008027 1.5e-81 308.5 661 35.6
SEGI_25925 Sequoiadendron giganteum HOM05D006512 ORTHO05D008027 7.4e-81 306.2 527 41.7
Os01g0698100 Oryza sativa ssp. japonica HOM05D006512 ORTHO05D008027 3.1e-79 300.8 442 44.6
HanXRQChr11g0335931 Helianthus annuus HOM05D006512 ORTHO05D008027 3.4e-78 297.4 366 50.3
Sc03g0008470 Simmondsia chinensis HOM05D006512 ORTHO05D008027 3.3e-73 280.8 388 46.1
Rhsim06G0220200 Rhododendron simsii HOM05D006512 ORTHO05D008027 1.7e-69 268.5 416 45.9
Sp6g17030 Schrenkiella parvula HOM05D006512 ORTHO05D008027 2.7e-67 261.2 379 44.3
Lalb_Chr17g0348651 Lupinus albus HOM05D006512 ORTHO05D008027 3.0e-66 257.7 353 47.0
CDE04G1000 Ceratophyllum demersum HOM05D006512 ORTHO05D008027 4.8e-64 250.4 369 46.9
MD11G1213200 Malus domestica HOM05D006512 ORTHO05D008027 4.5e-62 243.8 386 44.6
Psat2g014000 Pisum sativum HOM05D006512 ORTHO05D008027 3.6e-59 234.2 362 43.9
MBI07_g37843_MAGBIO Magnolia biondii HOM05D006512 ORTHO05D008027 6.7e-58 229.9 570 34.2
Mapoly0045s0119 Marchantia polymorpha HOM05D006512 ORTHO05D008027 8.8e-58 229.6 497 38.2
GSVIVG01037687001 Vitis vinifera HOM05D006512 ORTHO05D008027 4.8e-56 223.8 270 50.0
Dinv40780 Davidia involucrata HOM05D006512 ORTHO05D008027 2.1e-51 208.4 188 61.2
AT5G55100 Arabidopsis thaliana HOM05D006512 ORTHO05D008027 3.7e-48 197.6 464 36.6
Eucgr.F00737 Eucalyptus grandis HOM05D006512 ORTHO05D008027 4.2e-44 184.1 145 64.1
Cc05_g14000 Coffea canephora HOM05D006512 ORTHO05D008027 5.5e-44 183.7 281 44.1
QL08p009130 Quercus lobata HOM05D006512 ORTHO05D008027 2.6e-41 174.9 145 64.1
CARHR268440 Cardamine hirsuta HOM05D006512 ORTHO05D008027 3.7e-40 171.0 147 61.9
GSVIVG01037689001 Vitis vinifera HOM05D006512 ORTHO05D008027 1.3e-37 162.5 145 60.0
HanXRQChr11g0335921 Helianthus annuus HOM05D006512 ORTHO05D008027 1.7e-37 162.2 146 60.3
MD11G1213100 Malus domestica HOM05D006512 ORTHO05D008027 1.1e-36 159.5 147 58.5
Cc05_g14010 Coffea canephora HOM05D006512 ORTHO05D008027 7.3e-36 156.8 146 61.0
Solyc10g006250.3 Solanum lycopersicum HOM05D006512 ORTHO05D008027 2.1e-35 155.2 145 59.3
CANSAT56G4300 Cannabis sativa HOM05D006512 ORTHO05D008027 3.4e-33 147.9 137 58.4
Lalb_Chr17g0348641 Lupinus albus HOM05D006512 ORTHO05D008027 1.4e-31 142.5 144 54.2
Zm00001eb360910 Zea mays HOM05D006512 ORTHO05D008027 6.2e-27 127.1 232 37.9
VMungo0251G0907 Vigna mungo HOM05D001291 ORTHO05D008027 1.1e-15 89.7 169 37.9
Cre11.g481700 Chlamydomonas reinhardtii HOM05D006512 ORTHO05D008027 1.8e-10 72.4 69 49.3
CBR_g49368 Chara braunii HOM05D000019 ORTHO05D000048 2.0e-09 68.9 117 39.3
C02p33950 Brassica napus HOM05D014849 ORTHO05D016773 1.2e-06 59.7 60 58.3
BolC2t09315H Brassica oleracea HOM05D014849 ORTHO05D016773 1.2e-06 59.7 60 58.3
SalBow8G2582 Salvia bowleyana HOM05D002594 ORTHO05D003499 1.2e-06 59.7 78 38.5
BolC1t01000H Brassica oleracea HOM05D014849 ORTHO05D016773 1.6e-06 59.3 59 57.6
ATR0618G341 Amborella trichopoda HOM05D002594 ORTHO05D003499 4.6e-06 57.8 91 31.9
A09p24940 Brassica napus HOM05D014849 ORTHO05D016773 7.8e-06 57.0 60 55.0


User provided reference genes

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