Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR083G0966 Punica granatum HOM05D005833 ORTHO05D008135 0.0e+00 1567.7 880 100.0
QL02p014018 Quercus lobata HOM05D005833 ORTHO05D008135 3.6e-198 696.0 792 47.3
Haze_22762 Corylus avellana HOM05D005833 ORTHO05D008135 1.8e-194 683.7 814 46.9
Dinv31936 Davidia involucrata HOM05D005833 ORTHO05D008135 1.2e-190 671.0 805 50.4
Thecc.08G058300 Theobroma cacao HOM05D005833 ORTHO05D008135 2.0e-188 663.7 789 46.1
MD08G1002500 Malus domestica HOM05D005833 ORTHO05D008135 9.2e-186 654.8 795 46.3
Cpa.g.sc26.202 Carica papaya HOM05D005833 ORTHO05D008135 1.6e-185 654.1 757 47.2
Prupe.2G013700 Prunus persica HOM05D005833 ORTHO05D008135 2.7e-185 653.3 766 47.3
Gorai.002G118000 Gossypium raimondii HOM05D005833 ORTHO05D008135 3.7e-179 632.9 792 50.0
Actinidia15488 Actinidia chinensis HOM05D005833 ORTHO05D008135 5.4e-178 629.0 790 44.7
GSVIVG01008674001 Vitis vinifera HOM05D005833 ORTHO05D008135 2.7e-177 626.7 779 44.2
RcHm_v2.0_Chr6g0270441 Rosa chinensis HOM05D005833 ORTHO05D008135 7.8e-177 625.2 799 44.7
Actinidia17037 Actinidia chinensis HOM05D005833 ORTHO05D008135 1.3e-176 624.4 780 44.7
Gohir.A01G106200 Gossypium hirsutum HOM05D005833 ORTHO05D008135 1.3e-176 624.4 779 44.3
Ciclev10004328m.g Citrus clementina HOM05D005833 ORTHO05D008135 3.9e-176 622.9 802 49.8
CSS0049151 Camellia sinensis var. sinensis HOM05D005833 ORTHO05D008135 2.1e-174 617.1 799 46.4
TAR381G0753 Trochodendron aralioides HOM05D005833 ORTHO05D008135 2.8e-174 616.7 845 42.4
Manes.01G079700 Manihot esculenta HOM05D005833 ORTHO05D008135 1.1e-173 614.8 804 50.4
CANSAT56G4366 Cannabis sativa HOM05D005833 ORTHO05D008135 6.8e-173 612.1 768 47.7
vmacro21814 Vaccinium macrocarpon HOM05D005833 ORTHO05D008135 1.2e-172 611.3 801 45.2
Rhsim06G0007700 Rhododendron simsii HOM05D005833 ORTHO05D008135 7.6e-172 608.6 797 45.4
TWI38G0766 Tripterygium wilfordii HOM05D005833 ORTHO05D008135 1.1e-170 604.7 762 44.9
CiPaw.12G008600 Carya illinoinensis HOM05D005833 ORTHO05D008135 1.9e-170 604.0 748 46.9
FAN27G2717 Fragaria x ananassa HOM05D005833 ORTHO05D008135 5.1e-168 595.9 813 43.1
Sc02g0009090 Simmondsia chinensis HOM05D005833 ORTHO05D008135 5.1e-168 595.9 765 43.9
Potri.001G047200 Populus trichocarpa HOM05D005833 ORTHO05D008135 8.7e-168 595.1 841 41.1
Hma1.2p1_1100F.1_g257060 Hydrangea macrophylla HOM05D005833 ORTHO05D008135 1.2e-166 591.3 770 51.7
Nn5g30935 Nelumbo nucifera HOM05D005833 ORTHO05D008135 1.4e-165 587.8 800 42.6
THA.LOC104813754 Tarenaya hassleriana HOM05D005833 ORTHO05D008135 6.9e-165 585.5 779 46.2
FvH4_2g37510 Fragaria vesca HOM05D005833 ORTHO05D008135 2.0e-164 583.9 775 44.6
Thhalv10018138m.g Eutrema salsugineum HOM05D005833 ORTHO05D008135 2.9e-163 580.1 815 42.0
A07p41850 Brassica napus HOM05D005833 ORTHO05D008135 4.9e-163 579.3 817 41.2
Sp5g31420 Schrenkiella parvula HOM05D005833 ORTHO05D008135 1.9e-162 577.4 816 41.8
AL2G36360 Arabidopsis lyrata HOM05D005833 ORTHO05D008135 5.4e-162 575.9 781 42.0
BolC6t40064H Brassica oleracea HOM05D005833 ORTHO05D008135 7.1e-162 575.5 786 41.5
RcHm_v2.0_Chr6g0304231 Rosa chinensis HOM05D005833 ORTHO05D008135 7.1e-162 575.5 797 42.8
Lalb_Chr19g0131751 Lupinus albus HOM05D005833 ORTHO05D008135 2.1e-161 573.9 814 40.4
C06p50250 Brassica napus HOM05D005833 ORTHO05D008135 2.7e-161 573.5 756 42.9
BraA07t31715Z Brassica rapa HOM05D005833 ORTHO05D008135 3.5e-161 573.2 817 41.1
PGSC0003DMG400009977 Solanum tuberosum HOM05D005833 ORTHO05D008135 3.5e-161 573.2 783 41.8
Migut.N03019 Erythranthe guttata HOM05D005833 ORTHO05D008135 4.6e-161 572.8 791 50.2
Psat6g000360 Pisum sativum HOM05D005833 ORTHO05D008135 4.6e-161 572.8 770 41.9
Cc01_g04490 Coffea canephora HOM05D005833 ORTHO05D008135 7.8e-161 572.0 794 48.1
CAN.G311.113 Capsicum annuum HOM05D005833 ORTHO05D008135 1.0e-160 571.6 751 43.1
Ca_25244_v3 Cicer arietinum L. HOM05D005833 ORTHO05D008135 8.7e-160 568.5 767 41.2
Solyc04g082320.3 Solanum lycopersicum HOM05D005833 ORTHO05D008135 1.9e-159 567.4 776 41.5
MELO3C023645.2 Cucumis melo HOM05D005833 ORTHO05D008135 2.5e-159 567.0 764 42.1
CsaV3_7G024400 Cucumis sativus L. HOM05D005833 ORTHO05D008135 4.3e-159 566.2 764 41.5
Sopen04g035940 Solanum pennellii HOM05D005833 ORTHO05D008135 5.6e-159 565.8 775 41.8
Nitab4.5_0000588g0140 Nicotiana tabacum HOM05D005833 ORTHO05D008135 9.6e-159 565.1 758 42.2
Carub.0002s2317 Capsella rubella HOM05D005833 ORTHO05D008135 9.0e-157 558.5 790 41.5
SHI22388 Sapria himalayana HOM05D005833 ORTHO05D008135 3.4e-156 556.6 779 41.5
ClCG09G010280 Citrullus lanatus HOM05D005833 ORTHO05D008135 9.9e-156 555.1 787 40.2
Sabra01G0032600 Salix brachista HOM05D005833 ORTHO05D008135 9.9e-156 555.1 835 39.6
arahy.Tifrunner.gnm1.ann1.5KXZ1H Arachis hypogaea HOM05D005833 ORTHO05D008135 4.9e-155 552.7 763 42.6
arahy.Tifrunner.gnm1.ann1.JP3Y8V Arachis hypogaea HOM05D005833 ORTHO05D008135 4.9e-155 552.7 763 42.6
EL10Ac1g01971 Beta vulgaris HOM05D005833 ORTHO05D008135 1.9e-154 550.8 762 46.9
VMungo0647G1167 Vigna mungo HOM05D005833 ORTHO05D008135 4.2e-154 549.7 747 42.0
Medtr6g069480 Medicago truncatula HOM05D005833 ORTHO05D008135 7.1e-154 548.9 773 40.1
FAN15G1206 Fragaria x ananassa HOM05D005833 ORTHO05D008135 1.0e-152 545.0 773 42.7
Peaxi162Scf00893g00432 Petunia axillaris HOM05D005833 ORTHO05D008135 1.3e-152 544.7 749 41.7
Glyma.14G223300 Glycine max HOM05D005833 ORTHO05D008135 1.5e-151 541.2 813 45.4
MBI15_g24990_MAGBIO Magnolia biondii HOM05D005833 ORTHO05D008135 4.3e-151 539.7 928 37.8
Hma1.2p1_1100F.1_g257040 Hydrangea macrophylla HOM05D005833 ORTHO05D008135 5.6e-151 539.3 590 49.8
HanXRQChr14g0428311 Helianthus annuus HOM05D005833 ORTHO05D008135 4.8e-150 536.2 751 39.1
Aa31LG4G6370 Aethionema arabicum HOM05D005833 ORTHO05D008135 8.1e-150 535.4 765 41.2
Lj2g0014489 Lotus japonicus HOM05D005833 ORTHO05D008135 4.0e-149 533.1 785 39.4
MSTRG.22056 Avicennia marina HOM05D005833 ORTHO05D008135 2.2e-147 527.3 762 47.2
Lsat_1_v5_gn_2_5021 Lactuca sativa HOM05D005833 ORTHO05D008135 3.8e-147 526.6 758 41.6
SGA_v2.0_scaffold225G43066 Striga asiatica HOM05D005833 ORTHO05D008135 1.4e-146 524.6 801 40.9
ATR0691G240 Amborella trichopoda HOM05D005833 ORTHO05D008135 1.2e-145 521.5 844 38.9
ECA238G3879 Erigeron canadensis HOM05D005833 ORTHO05D008135 2.3e-144 517.3 737 39.3
Lj8C590T1 Lonicera japonica HOM05D005833 ORTHO05D008135 3.9e-144 516.5 712 47.6
Gohir.D01G092700 Gossypium hirsutum HOM05D005833 ORTHO05D008135 1.6e-142 511.1 558 49.8
Ah.11g041110 Amaranthus hybridus HOM05D005833 ORTHO05D008135 1.1e-141 508.4 750 39.7
BcaNung02801 Brassica carinata HOM05D005833 ORTHO05D008135 1.1e-141 508.4 786 39.7
Sed0015348 Sechium edule HOM05D005833 ORTHO05D008135 1.9e-138 497.7 555 48.1
AUR62043177 Chenopodium quinoa HOM05D005833 ORTHO05D008135 2.1e-137 494.2 810 38.0
Aqoxy6G01299 Aquilegia oxysepala HOM05D005833 ORTHO05D008135 1.5e-135 488.0 842 41.6
Eucgr.F01756 Eucalyptus grandis HOM05D005833 ORTHO05D008135 5.7e-135 486.1 627 50.2
CDE09G0025 Ceratophyllum demersum HOM05D005833 ORTHO05D008135 1.3e-134 485.0 842 37.4
Zm00001eb315840 Zea mays HOM05D005833 ORTHO05D008135 5.3e-133 479.6 770 36.6
TPR.G6767 Trifolium pratense HOM05D005833 ORTHO05D008135 3.4e-132 476.9 724 38.4
Phvul.001G001200 Phaseolus vulgaris HOM05D005833 ORTHO05D008135 1.3e-131 474.9 750 38.9
PSO675G2737 Papaver somniferum HOM05D005833 ORTHO05D008135 3.8e-131 473.4 858 42.7
FAN20G1756 Fragaria x ananassa HOM05D005833 ORTHO05D008135 8.5e-131 472.2 644 43.5
BcaC08g47270 Brassica carinata HOM05D005833 ORTHO05D008135 1.9e-130 471.1 575 45.7
PSO541G2949 Papaver somniferum HOM05D005833 ORTHO05D008135 5.5e-130 469.5 816 39.0
AT1G76280 Arabidopsis thaliana HOM05D005833 ORTHO05D008135 1.2e-129 468.4 563 46.4
CARHR069840 Cardamine hirsuta HOM05D005833 ORTHO05D008135 2.0e-124 451.1 610 41.8
HPP92_008490 Vanilla planifolia HOM05D005833 ORTHO05D008135 1.3e-118 431.8 845 34.7
DCAR_009531 Daucus carota HOM05D004428 ORTHO05D006381 4.1e-117 426.8 565 42.8
SalBow6G3625 Salvia bowleyana HOM05D005833 ORTHO05D008135 1.7e-115 421.4 527 44.6
SEGI_05799 Sequoiadendron giganteum HOM05D005833 ORTHO05D008135 1.7e-107 394.8 791 32.0
BcaC08g47127 Brassica carinata HOM05D005833 ORTHO05D008135 4.0e-96 357.1 443 45.8
AUR62036881 Chenopodium quinoa HOM05D005833 ORTHO05D008135 4.4e-95 353.6 527 40.4
unitig_699.g19597 Utricularia gibba HOM05D005833 ORTHO05D008135 3.0e-88 330.9 628 33.8
BcaC09g51226 Brassica carinata HOM05D005833 ORTHO05D008135 2.7e-76 291.2 660 32.7
TPR.G8628 Trifolium pratense HOM05D005833 ORTHO05D008135 2.2e-62 245.0 359 38.2
TPR.G8631 Trifolium pratense HOM05D005833 ORTHO05D008135 4.6e-52 210.7 333 37.5
COL.COLO4_04005 Corchorus olitorius HOM05D005833 ORTHO05D008135 6.2e-49 200.3 435 33.3
Pp3c11_2930 Physcomitrium patens HOM05D005833 ORTHO05D008135 9.0e-48 196.4 742 36.0
SMO230G0024 Selaginella moellendorffii HOM05D005833 ORTHO05D008135 5.4e-45 187.2 552 26.6
Glyma.14G222150 Glycine max HOM05D005833 ORTHO05D008135 7.8e-44 183.3 202 47.5
AagrBONN_evm.TU.Sc2ySwM_117.1478 Anthoceros agrestis HOM05D005833 ORTHO05D008135 2.6e-39 168.3 465 27.7
Mapoly0009s0070 Marchantia polymorpha HOM05D005833 ORTHO05D008135 9.0e-32 143.3 596 22.5
BcaC08g47126 Brassica carinata HOM05D005833 ORTHO05D008135 1.2e-31 142.9 255 31.4
Oeu011332.1 Olea europaea HOM05D005833 ORTHO05D008135 2.7e-28 131.7 128 47.7
Oeu011333.1 Olea europaea HOM05D005833 ORTHO05D008135 2.7e-28 131.7 128 47.7
Medtr1g026340 Medicago truncatula HOM05D005833 ORTHO05D008135 6.0e-28 130.6 148 43.9
Medtr1g026460 Medicago truncatula HOM05D005833 ORTHO05D008135 6.0e-28 130.6 148 43.9
Lj8P589T22 Lonicera japonica HOM05D005833 ORTHO05D008135 8.7e-27 126.7 134 50.7
CAN.G643.17 Capsicum annuum HOM05D005833 ORTHO05D008135 1.9e-26 125.6 382 28.3
CBR_g11913 Chara braunii HOM05D005833 ORTHO05D008135 7.4e-26 123.6 268 29.5
DCAR_009530 Daucus carota HOM05D005833 ORTHO05D008135 1.1e-24 119.8 111 50.5
Nitab4.5_0000198g0010 Nicotiana tabacum HOM05D005833 ORTHO05D008135 1.8e-24 119.0 127 46.5
BcaC08g47271 Brassica carinata HOM05D005833 ORTHO05D008135 1.0e-22 113.2 119 44.5
Medtr1g026480 Medicago truncatula HOM05D005833 ORTHO05D008135 1.6e-20 105.9 106 42.5
Lj5g0006874 Lotus japonicus HOM05D005833 ORTHO05D008135 1.8e-16 92.4 85 49.4
TPR.G8633 Trifolium pratense HOM05D005833 ORTHO05D008135 4.1e-16 91.3 85 49.4
BcaC09g51225 Brassica carinata HOM05D005833 ORTHO05D008135 1.6e-12 79.3 69 52.2
AagrBONN_evm.TU.Sc2ySwM_368.2635 Anthoceros agrestis HOM05D000001 ORTHO05D000003 1.8e-08 65.9 149 30.2
CAN.G772.6 Capsicum annuum HOM05D005833 ORTHO05D008135 2.0e-07 62.4 67 41.8
BcaB05g24986 Brassica carinata HOM05D005833 ORTHO05D008135 2.6e-07 62.0 71 50.7
Cc11_g04710 Coffea canephora HOM05D005362 ORTHO05D006895 1.7e-06 59.3 132 27.3
Lj2g0009795 Lotus japonicus HOM05D005362 ORTHO05D006895 5.0e-06 57.8 152 25.0
Oeu052452.1 Olea europaea HOM05D005362 ORTHO05D006895 5.0e-06 57.8 132 27.3
Zm00001eb315460 Zea mays HOM05D003689 ORTHO05D003950 6.5e-06 57.4 255 22.4


User provided reference genes

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