Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR083G0889 Punica granatum HOM05D007200 ORTHO05D009030 1.4e-162 576.2 292 100.0
Ciclev10002020m.g Citrus clementina HOM05D007200 ORTHO05D009030 4.8e-107 391.7 294 67.3
Haze_04164 Corylus avellana HOM05D007200 ORTHO05D009030 4.1e-106 388.7 282 69.1
Aqoxy5G00700 Aquilegia oxysepala HOM05D007200 ORTHO05D009030 1.2e-105 387.1 280 68.2
GSVIVG01031113001 Vitis vinifera HOM05D007200 ORTHO05D009030 4.5e-105 385.2 276 71.7
Manes.08G119500 Manihot esculenta HOM05D007200 ORTHO05D009030 5.9e-105 384.8 292 65.8
Eucgr.B01933 Eucalyptus grandis HOM05D007200 ORTHO05D009030 7.7e-105 384.4 266 70.7
TAR365G0906 Trochodendron aralioides HOM05D007200 ORTHO05D009030 2.2e-104 382.9 281 68.3
TAR365G0308 Trochodendron aralioides HOM05D007200 ORTHO05D009030 2.9e-104 382.5 281 68.3
QL03p012758 Quercus lobata HOM05D007200 ORTHO05D009030 6.5e-104 381.3 279 68.5
Cfa006611 Carpinus fangiana HOM05D007200 ORTHO05D009030 1.1e-103 380.6 280 67.9
Nn3g21404 Nelumbo nucifera HOM05D007200 ORTHO05D009030 2.7e-102 375.9 282 66.7
Lj9C128T5 Lonicera japonica HOM05D007200 ORTHO05D009030 3.6e-102 375.6 271 69.7
Duzib177G0869 Durio zibethinus HOM05D007200 ORTHO05D009030 8.0e-102 374.4 290 68.3
Sabra05G0032400 Salix brachista HOM05D007200 ORTHO05D009030 8.8e-101 370.9 297 64.6
CANSAT54G2021 Cannabis sativa HOM05D007200 ORTHO05D009030 2.6e-100 369.4 280 66.8
Glyma.10G153100 Glycine max HOM05D007200 ORTHO05D009030 5.7e-100 368.2 248 71.0
Thecc.05G310900 Theobroma cacao HOM05D007200 ORTHO05D009030 7.5e-100 367.9 290 67.2
CSS0011307 Camellia sinensis var. sinensis HOM05D007200 ORTHO05D009030 4.8e-99 365.2 286 64.3
RcHm_v2.0_Chr3g0455321 Rosa chinensis HOM05D007200 ORTHO05D009030 4.8e-99 365.2 254 70.1
AUR62005175 Chenopodium quinoa HOM05D007200 ORTHO05D009030 8.2e-99 364.4 278 64.4
Rhsim05G0141700 Rhododendron simsii HOM05D007200 ORTHO05D009030 1.1e-98 364.0 276 66.7
FvH4_6g06280 Fragaria vesca HOM05D007200 ORTHO05D009030 2.4e-98 362.8 256 69.5
Gohir.A11G266300 Gossypium hirsutum HOM05D007200 ORTHO05D009030 3.1e-98 362.5 253 72.7
AUR62000793 Chenopodium quinoa HOM05D007200 ORTHO05D009030 4.1e-98 362.1 279 64.2
VMungo0720G1786 Vigna mungo HOM05D007200 ORTHO05D009030 5.3e-98 361.7 247 70.0
FAN14G1797 Fragaria x ananassa HOM05D007200 ORTHO05D009030 9.1e-98 360.9 256 69.1
Lj9C124T9 Lonicera japonica HOM05D007200 ORTHO05D009030 1.2e-97 360.5 295 63.4
Gorai.007G298700 Gossypium raimondii HOM05D007200 ORTHO05D009030 1.6e-97 360.1 253 72.3
Actinidia24645 Actinidia chinensis HOM05D007200 ORTHO05D009030 2.7e-97 359.4 291 62.2
COL.COLO4_10491 Corchorus olitorius HOM05D007200 ORTHO05D009030 2.7e-97 359.4 253 71.9
Lsat_1_v5_gn_9_87521 Lactuca sativa HOM05D007200 ORTHO05D009030 2.7e-97 359.4 278 66.2
Gohir.D11G276600 Gossypium hirsutum HOM05D007200 ORTHO05D009030 5.9e-97 358.2 253 71.9
Atru.chr12.1493 Acer truncatum HOM05D007200 ORTHO05D009030 1.0e-96 357.5 285 62.1
CiPaw.07G020000 Carya illinoinensis HOM05D007200 ORTHO05D009030 1.3e-96 357.1 273 66.3
FAN09G0829 Fragaria x ananassa HOM05D007200 ORTHO05D009030 1.7e-96 356.7 286 64.3
TWI12G0470 Tripterygium wilfordii HOM05D007200 ORTHO05D009030 2.9e-96 355.9 291 62.5
Medtr1g083110 Medicago truncatula HOM05D007200 ORTHO05D009030 3.8e-96 355.5 262 65.6
Lalb_Chr21g0310651 Lupinus albus HOM05D007200 ORTHO05D009030 5.0e-96 355.1 260 66.9
HanXRQChr11g0339441 Helianthus annuus HOM05D007200 ORTHO05D009030 8.5e-96 354.4 287 63.1
Phvul.007G196200 Phaseolus vulgaris HOM05D007200 ORTHO05D009030 1.1e-95 354.0 247 68.0
Nitab4.5_0002420g0030 Nicotiana tabacum HOM05D007200 ORTHO05D009030 1.5e-95 353.6 288 61.5
Psat6g149880 Pisum sativum HOM05D007200 ORTHO05D009030 3.2e-95 352.4 261 65.9
Sed0020284 Sechium edule HOM05D007200 ORTHO05D009030 5.5e-95 351.7 250 69.2
MD12G1216700 Malus domestica HOM05D007200 ORTHO05D009030 1.6e-94 350.1 277 64.6
ECA236G3394 Erigeron canadensis HOM05D007200 ORTHO05D009030 2.7e-94 349.4 241 70.1
PGSC0003DMG400007427 Solanum tuberosum HOM05D007200 ORTHO05D009030 2.7e-94 349.4 248 68.1
Peaxi162Scf00071g00636 Petunia axillaris HOM05D007200 ORTHO05D009030 1.4e-93 347.1 290 60.3
DCAR_001939 Daucus carota HOM05D007200 ORTHO05D009030 5.2e-93 345.1 276 63.8
TPR.G6036 Trifolium pratense HOM05D007200 ORTHO05D009030 5.2e-93 345.1 279 61.3
Prupe.6G323000 Prunus persica HOM05D007200 ORTHO05D009030 4.4e-92 342.0 256 67.6
Cpa.g.sc48.76 Carica papaya HOM05D007200 ORTHO05D009030 7.5e-92 341.3 253 67.2
Thhalv10021289m.g Eutrema salsugineum HOM05D007200 ORTHO05D009030 9.8e-92 340.9 292 59.6
CsaV3_2G006520 Cucumis sativus L. HOM05D007200 ORTHO05D009030 2.8e-91 339.3 252 66.7
CARHR079750 Cardamine hirsuta HOM05D007200 ORTHO05D009030 4.8e-91 338.6 249 65.9
AL3G15960 Arabidopsis lyrata HOM05D007200 ORTHO05D009030 8.3e-91 337.8 292 59.6
CAN.G321.37 Capsicum annuum HOM05D007200 ORTHO05D009030 8.3e-91 337.8 249 65.5
BcaC05g30148 Brassica carinata HOM05D007200 ORTHO05D009030 1.1e-90 337.4 273 61.5
Solyc11g008480.2 Solanum lycopersicum HOM05D007200 ORTHO05D009030 1.1e-90 337.4 246 65.4
THA.LOC104818708 Tarenaya hassleriana HOM05D007200 ORTHO05D009030 1.1e-90 337.4 279 62.0
arahy.Tifrunner.gnm1.ann1.PH9A9F Arachis hypogaea HOM05D007200 ORTHO05D009030 1.4e-90 337.0 249 67.9
Carub.0003s0469 Capsella rubella HOM05D007200 ORTHO05D009030 1.8e-90 336.7 249 66.3
Ah.04g160430 Amaranthus hybridus HOM05D007200 ORTHO05D009030 2.4e-90 336.3 283 60.4
Aa31LG5G15970 Aethionema arabicum HOM05D007200 ORTHO05D009030 3.1e-90 335.9 273 60.4
Sp3g04270 Schrenkiella parvula HOM05D007200 ORTHO05D009030 3.1e-90 335.9 249 65.5
MELO3C004233.2 Cucumis melo HOM05D007200 ORTHO05D009030 4.1e-90 335.5 255 65.9
EL10Ac4g09392 Beta vulgaris HOM05D007200 ORTHO05D009030 5.4e-90 335.1 279 59.1
AT3G05410 Arabidopsis thaliana HOM05D007200 ORTHO05D009030 9.1e-90 334.3 249 65.1
arahy.Tifrunner.gnm1.ann1.H2XQXC Arachis hypogaea HOM05D007200 ORTHO05D009030 9.1e-90 334.3 249 67.5
Sopen11g004260 Solanum pennellii HOM05D007200 ORTHO05D009030 9.1e-90 334.3 246 64.6
Migut.O00553 Erythranthe guttata HOM05D007200 ORTHO05D009030 1.2e-89 334.0 281 60.9
Migut.N01991 Erythranthe guttata HOM05D007200 ORTHO05D009030 2.7e-89 332.8 281 60.9
Lj5g0005198 Lotus japonicus HOM05D007200 ORTHO05D009030 5.9e-89 331.6 251 66.5
BolC5t34842H Brassica oleracea HOM05D007200 ORTHO05D000438 7.7e-89 331.3 291 58.1
BraA05t23030Z Brassica rapa HOM05D007200 ORTHO05D009030 7.7e-89 331.3 249 63.9
Cc02_g31060 Coffea canephora HOM05D007200 ORTHO05D009030 1.3e-88 330.5 252 67.9
SGA_v2.0_scaffold98G29315 Striga asiatica HOM05D007200 ORTHO05D009030 1.3e-88 330.5 252 63.9
MBI19_g12813_MAGBIO Magnolia biondii HOM05D007200 ORTHO05D009030 1.7e-88 330.1 256 66.8
BcaC05g30124 Brassica carinata HOM05D007200 ORTHO05D009030 5.0e-88 328.6 273 59.7
Nitab4.5_0009303g0010 Nicotiana tabacum HOM05D007200 ORTHO05D009030 8.5e-88 327.8 288 59.7
vmacro19623 Vaccinium macrocarpon HOM05D007200 ORTHO05D009030 6.8e-85 318.2 251 63.7
FAN02G4393 Fragaria x ananassa HOM05D007200 ORTHO05D009030 1.3e-83 313.9 226 66.8
FAN05G3823 Fragaria x ananassa HOM05D000179 ORTHO05D009030 6.3e-83 311.6 225 68.4
unitig_746.g26859 Utricularia gibba HOM05D004477 ORTHO05D005615 6.3e-83 311.6 250 60.4
ATR0706G032 Amborella trichopoda HOM05D007200 ORTHO05D009030 2.4e-82 309.7 263 58.6
PSO210G0998 Papaver somniferum HOM05D007200 ORTHO05D009030 2.0e-81 306.6 254 62.2
MSTRG.27987 Avicennia marina HOM05D007200 ORTHO05D009030 7.7e-81 304.7 245 62.4
Zm00001eb142170 Zea mays HOM05D007200 ORTHO05D009030 1.0e-80 304.3 250 58.0
CDE02G3507 Ceratophyllum demersum HOM05D007200 ORTHO05D009030 2.8e-78 296.2 299 51.8
ClCG02G015570 Citrullus lanatus HOM05D007200 ORTHO05D009030 4.7e-78 295.4 255 59.6
PSO832G2855 Papaver somniferum HOM05D007200 ORTHO05D009030 4.7e-78 295.4 254 60.2
BcaC05g30126 Brassica carinata HOM05D007200 ORTHO05D009030 1.4e-77 293.9 273 56.0
CANSAT54G2778 Cannabis sativa HOM05D007200 ORTHO05D009030 4.0e-77 292.4 217 65.0
Potri.005G027100 Populus trichocarpa HOM05D007200 ORTHO05D009030 2.2e-75 286.6 219 68.9
HPP92_006928 Vanilla planifolia HOM05D000065 ORTHO05D001606 1.1e-74 284.3 237 60.3
Os01g0934400 Oryza sativa ssp. japonica HOM05D007200 ORTHO05D009030 1.7e-59 233.8 179 62.0
Hund07085 Selenicereus undatus HOM05D007200 ORTHO05D009030 1.7e-59 233.8 173 65.3
AagrBONN_evm.TU.Sc2ySwM_228.2760 Anthoceros agrestis HOM05D007200 ORTHO05D009030 6.0e-57 225.3 234 49.1
Pp3c2_22000 Physcomitrium patens HOM05D007200 ORTHO05D009030 1.0e-56 224.6 244 50.0
Mapoly0092s0016 Marchantia polymorpha HOM05D007200 ORTHO05D009030 1.2e-54 217.6 247 47.4
SMO140G0101 Selaginella moellendorffii HOM05D007200 ORTHO05D009030 1.8e-53 213.8 238 45.8
Sc16g0008540 Simmondsia chinensis HOM05D007200 ORTHO05D009030 1.1e-50 204.5 174 59.2
SGA_v2.0_scaffold95G28806 Striga asiatica HOM05D007200 ORTHO05D009030 2.5e-47 193.4 177 56.5
AUR62004827 Chenopodium quinoa HOM05D007200 ORTHO05D009030 2.1e-46 190.3 180 55.6
CBR_g32304 Chara braunii HOM05D007200 ORTHO05D009030 1.2e-44 184.5 268 38.8
Cre09.g389578 Chlamydomonas reinhardtii HOM05D007200 ORTHO05D009030 3.0e-40 169.9 256 41.4
PRCOL_00003141 Prasinoderma coloniale HOM05D007200 ORTHO05D009030 9.9e-36 154.8 231 42.9
Oeu012109.1 Olea europaea HOM05D007200 ORTHO05D009030 7.9e-33 145.2 104 65.4
Actinidia19786 Actinidia chinensis HOM05D007200 ORTHO05D009030 7.4e-31 138.7 107 58.9
MCO07G015 Micromonas commoda HOM05D007200 ORTHO05D009030 7.4e-31 138.7 243 33.3
C05p61820 Brassica napus HOM05D000205 ORTHO05D000438 2.4e-21 107.1 169 41.4
MD04G1202900 Malus domestica HOM05D007200 ORTHO05D009030 9.0e-21 105.1 120 51.7
Os01g0934350 Oryza sativa ssp. japonica HOM05D007200 ORTHO05D009030 3.7e-14 83.2 89 42.7
AUR62032114 Chenopodium quinoa HOM05D002933 ORTHO05D007742 1.5e-12 77.8 244 26.2
AUR62039657 Chenopodium quinoa HOM05D002933 ORTHO05D007742 4.5e-12 76.3 231 26.0
EL10Ac5g11164 Beta vulgaris HOM05D002933 ORTHO05D007742 6.5e-11 72.4 296 25.3
TWI15G0569 Tripterygium wilfordii HOM05D002933 ORTHO05D007742 1.4e-10 71.2 188 25.5
Migut.B00505 Erythranthe guttata HOM05D002933 ORTHO05D007742 1.9e-10 70.9 242 26.9
CAN.G1228.6 Capsicum annuum HOM05D002933 ORTHO05D007742 2.5e-10 70.5 114 33.3
Hund02566 Selenicereus undatus HOM05D002933 ORTHO05D007742 5.5e-10 69.3 291 24.1
Thhalv10010685m.g Eutrema salsugineum HOM05D002933 ORTHO05D007742 1.2e-09 68.2 115 32.2
Oeu057202.1 Olea europaea HOM05D002933 ORTHO05D007742 1.2e-09 68.2 114 32.5
BcaC02g09745 Brassica carinata HOM05D002933 ORTHO05D007742 1.6e-09 67.8 116 33.6
BolC4t25275H Brassica oleracea HOM05D002933 ORTHO05D007742 1.6e-09 67.8 116 33.6
VMungo1383G1673 Vigna mungo HOM05D002933 ORTHO05D007742 1.6e-09 67.8 187 26.2
A04p04610 Brassica napus HOM05D002933 ORTHO05D007742 2.7e-09 67.0 116 33.6
BraA04t16171Z Brassica rapa HOM05D002933 ORTHO05D007742 2.7e-09 67.0 116 33.6
Carub.0005s2198 Capsella rubella HOM05D002933 ORTHO05D007742 2.7e-09 67.0 115 31.3
COL.COLO4_14919 Corchorus olitorius HOM05D002933 ORTHO05D007742 2.7e-09 67.0 114 33.3
FAN03G0329 Fragaria x ananassa HOM05D002933 ORTHO05D007742 2.7e-09 67.0 102 36.3
BcaB02g08429 Brassica carinata HOM05D002933 ORTHO05D007742 4.6e-09 66.2 116 32.8
Ah.11g047550 Amaranthus hybridus HOM05D006809 ORTHO05D008609 6.1e-09 65.9 239 25.1
Solyc03g114930.3 Solanum lycopersicum HOM05D002933 ORTHO05D007742 6.1e-09 65.9 102 35.3
Sopen03g034010 Solanum pennellii HOM05D002933 ORTHO05D007742 6.1e-09 65.9 102 35.3
PGSC0003DMG400024531 Solanum tuberosum HOM05D002933 ORTHO05D007742 6.1e-09 65.9 102 34.3
MSTRG.22954 Avicennia marina HOM05D002933 ORTHO05D007742 7.9e-09 65.5 114 32.5
SalBow5G4018 Salvia bowleyana HOM05D002933 ORTHO05D007742 1.3e-08 64.7 114 32.5
TAR636G1208 Trochodendron aralioides HOM05D002933 ORTHO05D007742 3.0e-08 63.5 114 30.7
Ciclev10032564m.g Citrus clementina HOM05D002933 ORTHO05D007742 3.3e-07 60.1 190 23.7


User provided reference genes

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