Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR083G0776 Punica granatum HOM05D005429 ORTHO05D006697 2.1e-69 265.8 155 100.0
CSS0004524 Camellia sinensis var. sinensis HOM05D005429 ORTHO05D006697 2.6e-51 205.7 130 82.3
Rhsim03G0256400 Rhododendron simsii HOM05D005429 ORTHO05D006697 2.6e-51 205.7 155 80.6
Rhsim10G0195600 Rhododendron simsii HOM05D005429 ORTHO05D006697 2.6e-51 205.7 155 80.6
CiPaw.05G164700 Carya illinoinensis HOM05D005429 ORTHO05D006697 4.4e-51 204.9 126 84.1
Eucgr.C03287 Eucalyptus grandis HOM05D005429 ORTHO05D006697 7.6e-51 204.1 126 87.3
Dinv42877 Davidia involucrata HOM05D005429 ORTHO05D006697 9.9e-51 203.8 130 83.1
Dinv43223 Davidia involucrata HOM05D005429 ORTHO05D006697 9.9e-51 203.8 130 83.1
Eucgr.F00079 Eucalyptus grandis HOM05D005429 ORTHO05D006697 1.7e-50 203.0 126 87.3
Eucgr.C04279 Eucalyptus grandis HOM05D005429 ORTHO05D006697 2.2e-50 202.6 126 86.5
GSVIVG01036692001 Vitis vinifera HOM05D005429 ORTHO05D006697 2.9e-50 202.2 130 82.3
Actinidia23548 Actinidia chinensis HOM05D005429 ORTHO05D006697 1.1e-49 200.3 128 82.8
CSS0015948 Camellia sinensis var. sinensis HOM05D005429 ORTHO05D006697 1.1e-49 200.3 127 81.9
CSS0034504 Camellia sinensis var. sinensis HOM05D005429 ORTHO05D006697 1.1e-49 200.3 127 81.9
TWI18G1141 Tripterygium wilfordii HOM05D005429 ORTHO05D006697 2.4e-49 199.1 132 80.3
Nitab4.5_0000548g0210 Nicotiana tabacum HOM05D005429 ORTHO05D006697 3.2e-49 198.7 127 81.9
Prupe.7G260300 Prunus persica HOM05D005429 ORTHO05D006697 4.2e-49 198.4 130 81.5
Nitab4.5_0009812g0020 Nicotiana tabacum HOM05D005429 ORTHO05D006697 7.1e-49 197.6 152 77.6
TAR624G1317 Trochodendron aralioides HOM05D005429 ORTHO05D006697 7.1e-49 197.6 156 79.5
Ca_03324_v3 Cicer arietinum L. HOM05D005429 ORTHO05D006697 9.2e-49 197.2 130 82.3
ClCG11G011870 Citrullus lanatus HOM05D005429 ORTHO05D006697 9.2e-49 197.2 150 76.0
Atru.chr3.2997 Acer truncatum HOM05D005429 ORTHO05D006697 1.2e-48 196.8 163 69.9
CsaV3_1G046300 Cucumis sativus L. HOM05D005429 ORTHO05D006697 1.2e-48 196.8 150 76.0
vmacro06089 Vaccinium macrocarpon HOM05D005429 ORTHO05D006697 1.2e-48 196.8 147 81.6
Glyma.15G204300 Glycine max HOM05D005429 ORTHO05D006697 1.6e-48 196.4 157 79.0
Potri.008G080700 Populus trichocarpa HOM05D005429 ORTHO05D006697 1.6e-48 196.4 159 76.1
LjContig00222g0019384 Lotus japonicus HOM05D005429 ORTHO05D006697 2.1e-48 196.1 158 78.5
MELO3C021751.2 Cucumis melo HOM05D005429 ORTHO05D006697 3.5e-48 195.3 150 76.7
QL11p022585 Quercus lobata HOM05D005429 ORTHO05D006697 4.6e-48 194.9 128 79.7
Thecc.05G251100 Theobroma cacao HOM05D005429 ORTHO05D006697 6.0e-48 194.5 125 82.4
Gohir.D02G066500 Gossypium hirsutum HOM05D005429 ORTHO05D006697 7.8e-48 194.1 122 82.8
Cc02_g22920 Coffea canephora HOM05D005429 ORTHO05D006697 1.0e-47 193.7 153 77.8
Dinv44073 Davidia involucrata HOM05D005429 ORTHO05D006697 1.0e-47 193.7 128 82.0
AT1G16430 Arabidopsis thaliana HOM05D005429 ORTHO05D006697 1.3e-47 193.4 124 79.8
Duzib116G0688 Durio zibethinus HOM05D005429 ORTHO05D006697 1.3e-47 193.4 120 85.0
Medtr2g062860 Medicago truncatula HOM05D005429 ORTHO05D006697 1.3e-47 193.4 130 82.3
PSO384G3609 Papaver somniferum HOM05D005429 ORTHO05D006697 1.3e-47 193.4 150 75.3
PSO832G0230 Papaver somniferum HOM05D005429 ORTHO05D006697 1.3e-47 193.4 150 72.0
Ciclev10022715m.g Citrus clementina HOM05D005429 ORTHO05D006697 1.7e-47 193.0 124 81.5
CARHR016900 Cardamine hirsuta HOM05D005429 ORTHO05D006697 2.3e-47 192.6 123 80.5
ECA238G3108 Erigeron canadensis HOM05D005429 ORTHO05D006697 2.3e-47 192.6 150 77.3
Psat1g130720 Pisum sativum HOM05D005429 ORTHO05D006697 2.3e-47 192.6 132 81.1
Thecc.08G200900 Theobroma cacao HOM05D005429 ORTHO05D006697 3.0e-47 192.2 120 84.2
Lalb_Chr01g0015641 Lupinus albus HOM05D005429 ORTHO05D006697 3.9e-47 191.8 151 80.8
Gorai.005G075400 Gossypium raimondii HOM05D005429 ORTHO05D006697 5.1e-47 191.4 120 83.3
Solyc03g083300.3 Solanum lycopersicum HOM05D005429 ORTHO05D006697 5.1e-47 191.4 127 78.0
Sopen03g023050 Solanum pennellii HOM05D005429 ORTHO05D006697 5.1e-47 191.4 127 78.0
AT1G07950 Arabidopsis thaliana HOM05D005429 ORTHO05D006697 6.6e-47 191.0 123 79.7
COL.COLO4_05834 Corchorus olitorius HOM05D005429 ORTHO05D006697 6.6e-47 191.0 121 82.6
PSO210G6955 Papaver somniferum HOM05D005429 ORTHO05D006697 6.6e-47 191.0 150 72.7
PGSC0003DMG400009083 Solanum tuberosum HOM05D005429 ORTHO05D006697 6.6e-47 191.0 127 78.0
Nn4g23117 Nelumbo nucifera HOM05D005429 ORTHO05D006697 8.7e-47 190.7 128 82.0
THA.LOC104812397 Tarenaya hassleriana HOM05D005429 ORTHO05D006697 8.7e-47 190.7 125 80.0
Sp1g14580 Schrenkiella parvula HOM05D005429 ORTHO05D006697 1.1e-46 190.3 123 81.3
AL1G18280 Arabidopsis lyrata HOM05D005429 ORTHO05D006697 2.5e-46 189.1 127 77.2
Aqoxy3G02759 Aquilegia oxysepala HOM05D005429 ORTHO05D006697 3.3e-46 188.7 157 76.4
Carub.0001s0730 Capsella rubella HOM05D005429 ORTHO05D006697 3.3e-46 188.7 123 78.9
VMungo1080G0054 Vigna mungo HOM05D005429 ORTHO05D006697 3.3e-46 188.7 159 75.5
Aa31LG7G970 Aethionema arabicum HOM05D005429 ORTHO05D006697 4.3e-46 188.3 152 75.0
arahy.Tifrunner.gnm1.ann1.WT0EG6 Arachis hypogaea HOM05D005429 ORTHO05D006697 4.3e-46 188.3 128 81.2
Cfa010706 Carpinus fangiana HOM05D005429 ORTHO05D006697 4.3e-46 188.3 124 79.8
Gohir.A02G061000 Gossypium hirsutum HOM05D005429 ORTHO05D006697 5.6e-46 188.0 119 83.2
PSO339G4006 Papaver somniferum HOM05D005429 ORTHO05D006697 5.6e-46 188.0 150 72.0
AL1G28560 Arabidopsis lyrata HOM05D005429 ORTHO05D006697 7.3e-46 187.6 123 78.0
Lj7A456T20 Lonicera japonica HOM05D005429 ORTHO05D006697 7.3e-46 187.6 148 77.7
Sed0018631 Sechium edule HOM05D005429 ORTHO05D006697 7.3e-46 187.6 122 80.3
arahy.Tifrunner.gnm1.ann1.9U3PF1 Arachis hypogaea HOM05D005429 ORTHO05D006697 9.6e-46 187.2 120 84.2
Manes.03G077300 Manihot esculenta HOM05D005429 ORTHO05D006697 2.1e-45 186.0 131 77.1
BcaC05g25573 Brassica carinata HOM05D005429 ORTHO05D006697 2.8e-45 185.7 123 78.0
C05p14630 Brassica napus HOM05D005429 ORTHO05D006697 2.8e-45 185.7 123 78.0
BolC5t30184H Brassica oleracea HOM05D005429 ORTHO05D006697 2.8e-45 185.7 123 78.0
BraA06t24400Z Brassica rapa HOM05D005429 ORTHO05D006697 2.8e-45 185.7 123 78.0
Phvul.005G043700 Phaseolus vulgaris HOM05D005429 ORTHO05D006697 2.8e-45 185.7 128 78.9
AUR62006203 Chenopodium quinoa HOM05D005429 ORTHO05D006697 4.8e-45 184.9 130 74.6
AUR62030412 Chenopodium quinoa HOM05D005429 ORTHO05D006697 4.8e-45 184.9 130 74.6
Glyma.08G160100 Glycine max HOM05D005429 ORTHO05D006697 4.8e-45 184.9 159 74.8
RcHm_v2.0_Chr5g0022991 Rosa chinensis HOM05D005429 ORTHO05D006697 4.8e-45 184.9 122 77.9
A06p12360 Brassica napus HOM05D005429 ORTHO05D006697 6.2e-45 184.5 123 77.2
MSTRG.26291 Avicennia marina HOM05D005429 ORTHO05D006697 1.1e-44 183.7 130 76.2
BcaB02g06622 Brassica carinata HOM05D005429 ORTHO05D006697 1.4e-44 183.3 145 77.2
Cpa.g.sc16.3 Carica papaya HOM05D005429 ORTHO05D006697 1.4e-44 183.3 126 74.6
DCAR_027354 Daucus carota HOM05D005429 ORTHO05D006697 1.8e-44 183.0 127 77.2
Carub.0001s1617 Capsella rubella HOM05D005429 ORTHO05D006697 3.1e-44 182.2 123 78.9
CDE02G4404 Ceratophyllum demersum HOM05D005429 ORTHO05D006697 3.1e-44 182.2 155 71.0
Lsat_1_v5_gn_2_59100 Lactuca sativa HOM05D005429 ORTHO05D006697 3.1e-44 182.2 125 76.0
HPP92_024623 Vanilla planifolia HOM05D005429 ORTHO05D006697 3.1e-44 182.2 149 69.1
FAN16G2737 Fragaria x ananassa HOM05D005429 ORTHO05D006697 4.0e-44 181.8 148 75.0
TPR.G39484 Trifolium pratense HOM05D005429 ORTHO05D006697 4.0e-44 181.8 131 76.3
Peaxi162Scf00003g04037 Petunia axillaris HOM05D005383 ORTHO05D006722 9.0e-44 180.6 124 79.0
Thhalv10008938m.g Eutrema salsugineum HOM05D005429 ORTHO05D006697 2.0e-43 179.5 132 73.5
Sabra08G0060000 Salix brachista HOM05D005429 ORTHO05D006697 2.0e-43 179.5 157 72.0
CANSAT56G3386 Cannabis sativa HOM05D005429 ORTHO05D006697 5.8e-43 177.9 124 72.6
FvH4_3g13800 Fragaria vesca HOM05D005429 ORTHO05D006697 5.8e-43 177.9 122 76.2
HanXRQChr14g0437971 Helianthus annuus HOM05D005429 ORTHO05D006697 7.6e-43 177.6 123 75.6
FAN21G1331 Fragaria x ananassa HOM05D005429 ORTHO05D006697 1.3e-42 176.8 122 75.4
FAN25G2434 Fragaria x ananassa HOM05D005429 ORTHO05D006697 1.3e-42 176.8 120 76.7
SGA_v2.0_scaffold147G36309 Striga asiatica HOM05D005429 ORTHO05D006697 1.3e-42 176.8 124 75.0
EL10Ac5g12584 Beta vulgaris HOM05D005429 ORTHO05D006697 2.2e-42 176.0 155 71.0
FAN11G0784 Fragaria x ananassa HOM05D005429 ORTHO05D006697 2.2e-42 176.0 152 72.4
Peaxi162Scf03254g00010 Petunia axillaris HOM05D005429 ORTHO05D006697 2.2e-42 176.0 124 78.2
Sc16g0002320 Simmondsia chinensis HOM05D005429 ORTHO05D006697 1.4e-41 173.3 126 73.0
SEGI_11251 Sequoiadendron giganteum HOM05D005429 ORTHO05D006697 7.1e-41 171.0 147 63.3
Migut.N01785 Erythranthe guttata HOM05D005429 ORTHO05D006697 1.6e-40 169.9 123 73.2
Hund11041 Selenicereus undatus HOM05D005429 ORTHO05D006697 2.1e-40 169.5 131 71.0
Ah.04g163250 Amaranthus hybridus HOM05D005429 ORTHO05D006697 4.6e-40 168.3 130 70.0
Peaxi162Scf00003g03942 Petunia axillaris HOM05D005429 ORTHO05D006697 4.6e-40 168.3 124 75.0
SGA_v2.0_scaffold19G08578 Striga asiatica HOM05D005429 ORTHO05D006697 2.3e-39 166.0 116 75.0
DCAR_014816 Daucus carota HOM05D005429 ORTHO05D006697 3.0e-39 165.6 151 60.9
QL02p100061 Quercus lobata HOM05D005429 ORTHO05D006697 8.7e-39 164.1 199 51.8
Hma1.2p1_0817F.1_g223090 Hydrangea macrophylla HOM05D005429 ORTHO05D006697 1.5e-38 163.3 154 70.1
Eucgr.C04273 Eucalyptus grandis HOM05D005429 ORTHO05D006697 1.9e-38 162.9 121 84.3
unitig_749.g13420 Utricularia gibba HOM05D005429 ORTHO05D006697 4.3e-38 161.8 119 68.1
ATR0019G018 Amborella trichopoda HOM05D005429 ORTHO05D006697 5.6e-38 161.4 124 69.4
Os08g0480500 Oryza sativa ssp. japonica HOM05D005429 ORTHO05D006697 1.3e-37 160.2 123 66.7
Haze_03266 Corylus avellana HOM05D005429 ORTHO05D006697 4.8e-37 158.3 203 49.8
MD02G1009700 Malus domestica HOM05D005429 ORTHO05D006697 4.5e-35 151.8 160 63.1
QL04p071374 Quercus lobata HOM05D005429 ORTHO05D006697 1.7e-34 149.8 102 77.5
Peaxi162Scf00003g04025 Petunia axillaris HOM05D005429 ORTHO05D006697 2.2e-34 149.4 100 80.0
unitig_26.g9672 Utricularia gibba HOM05D005429 ORTHO05D006697 6.4e-34 147.9 120 63.3
Haze_03271 Corylus avellana HOM05D005429 ORTHO05D001402 8.4e-34 147.5 99 77.8
Zm00001eb335330 Zea mays HOM05D005429 ORTHO05D006697 5.4e-33 144.8 148 62.2
Oeu051694.1 Olea europaea HOM05D005429 ORTHO05D006697 1.6e-32 143.3 106 71.7
Pp3c24_19620 Physcomitrium patens HOM05D005429 ORTHO05D006697 6.0e-32 141.4 128 57.8
Mapoly0161s0019 Marchantia polymorpha HOM05D005429 ORTHO05D006697 3.9e-31 138.7 120 60.8
Pp3c20_1390 Physcomitrium patens HOM05D005429 ORTHO05D006697 5.1e-31 138.3 123 58.5
Peaxi162Scf03393g00016 Petunia axillaris HOM05D005429 ORTHO05D006697 1.5e-30 136.7 91 80.2
SMO141G0142 Selaginella moellendorffii HOM05D005429 ORTHO05D006697 5.6e-30 134.8 122 58.2
Os01g0132700 Oryza sativa ssp. japonica HOM05D005429 ORTHO05D006697 9.6e-30 134.0 147 55.8
AagrBONN_evm.TU.Sc2ySwM_117.1673 Anthoceros agrestis HOM05D005429 ORTHO05D006697 1.5e-27 126.7 121 54.5
Aqoxy3G02314 Aquilegia oxysepala HOM05D005429 ORTHO05D006697 2.0e-27 126.3 83 79.5
CAN.G1618.6 Capsicum annuum HOM05D005429 ORTHO05D006697 1.8e-23 113.2 95 61.1
CAN.G584.55 Capsicum annuum HOM05D005429 ORTHO05D006697 1.8e-23 113.2 95 61.1
Eucgr.L02967 Eucalyptus grandis HOM05D005429 ORTHO05D006697 2.5e-22 109.4 101 63.4
Oeu050474.1 Olea europaea HOM05D005429 ORTHO05D006697 2.8e-21 105.9 79 68.4
Eucgr.C04269 Eucalyptus grandis HOM05D005429 ORTHO05D006697 3.4e-19 99.0 100 61.0
Peaxi162Scf03393g00018 Petunia axillaris HOM05D005429 ORTHO05D006697 4.6e-16 88.6 65 69.2
Zm00001eb228470 Zea mays HOM05D005429 ORTHO05D006697 2.8e-13 79.3 52 69.2
SGA_v2.0_scaffold19G08613 Striga asiatica HOM05D005429 ORTHO05D006697 9.4e-09 64.3 70 58.6
SGA_v2.0_scaffold19G08607 Striga asiatica HOM05D005429 ORTHO05D006697 1.2e-08 63.9 83 53.0
SGA_v2.0_scaffold711G53500 Striga asiatica HOM05D005429 ORTHO05D006697 1.2e-08 63.9 83 53.0
Peaxi162Scf00003g04026 Petunia axillaris HOM05D000011 ORTHO05D011267 1.1e-06 57.4 47 61.7


User provided reference genes

Program Settings