Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR044G2487 Punica granatum HOM05D007833 ORTHO05D009855 3.9e-15 84.3 41 100.0
Potri.005G208100 Populus trichocarpa HOM05D007833 ORTHO05D009855 1.2e-11 72.8 41 85.4
Gohir.A08G068400 Gossypium hirsutum HOM05D007833 ORTHO05D009855 5.8e-11 70.5 44 81.8
Gorai.004G081500 Gossypium raimondii HOM05D007833 ORTHO05D009855 5.8e-11 70.5 44 81.8
COL.COLO4_09117 Corchorus olitorius HOM05D003232 ORTHO05D003584 7.6e-11 70.1 44 79.5
Gohir.D08G076800 Gossypium hirsutum HOM05D007833 ORTHO05D009855 7.6e-11 70.1 37 89.2
Manes.01G208800 Manihot esculenta HOM05D007833 ORTHO05D009855 1.3e-10 69.3 37 86.5
Thecc.01G281600 Theobroma cacao HOM05D007833 ORTHO05D009855 1.3e-10 69.3 44 79.5
Duzib133G1414 Durio zibethinus HOM05D007833 ORTHO05D009855 2.2e-10 68.6 44 77.3
Sed0020364 Sechium edule HOM05D007833 ORTHO05D009855 2.2e-10 68.6 45 80.0
Eucgr.K03378 Eucalyptus grandis HOM05D007833 ORTHO05D009855 2.9e-10 68.2 42 81.0
ClCG07G000180 Citrullus lanatus HOM05D007833 ORTHO05D009855 4.9e-10 67.4 37 86.5
Nitab4.5_0008797g0010 Nicotiana tabacum HOM05D007833 ORTHO05D009855 1.1e-09 66.2 37 81.1
Potri.002G054700 Populus trichocarpa HOM05D007833 ORTHO05D009855 1.1e-09 66.2 41 78.0
AUR62036454 Chenopodium quinoa HOM05D007833 ORTHO05D009855 1.4e-09 65.9 40 72.5
MD03G1267100 Malus domestica HOM05D007833 ORTHO05D009855 1.4e-09 65.9 44 75.0
EL10Ac7g17570 Beta vulgaris HOM05D007833 ORTHO05D009855 1.9e-09 65.5 40 72.5
Duzib138G0003 Durio zibethinus HOM05D007833 ORTHO05D009855 1.9e-09 65.5 37 81.1
MD11G1287600 Malus domestica HOM05D007833 ORTHO05D009855 1.9e-09 65.5 44 75.0
FAN20G1309 Fragaria x ananassa HOM05D007833 ORTHO05D009855 2.4e-09 65.1 44 75.0
QL12p022146 Quercus lobata HOM05D007833 ORTHO05D009855 2.4e-09 65.1 44 72.7
FvH4_2g23750 Fragaria vesca HOM05D007833 ORTHO05D009855 3.2e-09 64.7 37 81.1
FAN24G2170 Fragaria x ananassa HOM05D007833 ORTHO05D009855 3.2e-09 64.7 37 81.1
Nitab4.5_0000759g0080 Nicotiana tabacum HOM05D007833 ORTHO05D009855 3.2e-09 64.7 37 78.4
Glyma.19G154700 Glycine max HOM05D007833 ORTHO05D009855 4.2e-09 64.3 41 70.7
Lj1g0020293 Lotus japonicus HOM05D007833 ORTHO05D009855 4.2e-09 64.3 41 68.3
TWI59G0429 Tripterygium wilfordii HOM05D007833 ORTHO05D009855 4.2e-09 64.3 44 75.0
TAR365G0564 Trochodendron aralioides HOM05D007833 ORTHO05D009855 4.2e-09 64.3 37 78.4
RcHm_v2.0_Chr6g0291241 Rosa chinensis HOM05D007833 ORTHO05D009855 5.4e-09 63.9 37 78.4
Thhalv10010886m.g Eutrema salsugineum HOM05D007833 ORTHO05D009855 7.1e-09 63.5 44 72.7
Sc24g0003060 Simmondsia chinensis HOM05D007833 ORTHO05D009855 7.1e-09 63.5 37 73.0
Solyc06g084300.1 Solanum lycopersicum HOM05D007833 ORTHO05D009855 7.1e-09 63.5 37 75.7
Sopen06g035690 Solanum pennellii HOM05D007833 ORTHO05D009855 7.1e-09 63.5 37 75.7
PGSC0003DMG400020049 Solanum tuberosum HOM05D007833 ORTHO05D009855 7.1e-09 63.5 37 75.7
BcaC06g32911 Brassica carinata HOM05D007833 ORTHO05D009855 9.3e-09 63.2 44 70.5
BcaC06g33387 Brassica carinata HOM05D007833 ORTHO05D009855 9.3e-09 63.2 44 70.5
C07p46950 Brassica napus HOM05D000938 ORTHO05D001451 9.3e-09 63.2 44 70.5
BolC7t45211H Brassica oleracea HOM05D000938 ORTHO05D001451 9.3e-09 63.2 44 70.5
Glyma.03G152200 Glycine max HOM05D007833 ORTHO05D009855 9.3e-09 63.2 41 70.7
Glyma.17G209300 Glycine max HOM05D007833 ORTHO05D009855 9.3e-09 63.2 41 70.7
Sp5g09880 Schrenkiella parvula HOM05D007833 ORTHO05D009855 9.3e-09 63.2 44 70.5
Atru.chr5.1399 Acer truncatum HOM05D007833 ORTHO05D009855 1.2e-08 62.8 37 75.7
Cc01_g19620 Coffea canephora HOM05D007833 ORTHO05D009855 1.2e-08 62.8 41 70.7
CANSAT25G0416 Cannabis sativa HOM05D007833 ORTHO05D009855 1.6e-08 62.4 37 75.7
Carub.0005s1877 Capsella rubella HOM05D007833 ORTHO05D009855 1.6e-08 62.4 44 70.5
MBI04_g33966_MAGBIO Magnolia biondii HOM05D007833 ORTHO05D009855 1.6e-08 62.4 37 73.0
Phvul.001G149800 Phaseolus vulgaris HOM05D007833 ORTHO05D009855 1.6e-08 62.4 41 68.3
AUR62017101 Chenopodium quinoa HOM05D007833 ORTHO05D009855 2.1e-08 62.0 40 67.5
Haze_04727 Corylus avellana HOM05D001305 ORTHO05D007147 2.1e-08 62.0 44 70.5
ECA247G0823 Erigeron canadensis HOM05D007833 ORTHO05D009855 2.1e-08 62.0 37 70.3
Medtr7g094710 Medicago truncatula HOM05D007833 ORTHO05D009855 2.1e-08 62.0 41 68.3
Psat3g064960 Pisum sativum HOM05D007833 ORTHO05D009855 2.1e-08 62.0 41 68.3
Ciclev10023167m.g Citrus clementina HOM05D007833 ORTHO05D009855 2.7e-08 61.6 37 73.0
Lsat_1_v5_gn_9_4081 Lactuca sativa HOM05D007833 ORTHO05D009855 2.7e-08 61.6 37 73.0
Nn1g02183 Nelumbo nucifera HOM05D007833 ORTHO05D009855 2.7e-08 61.6 37 75.7
Prupe.8G242800 Prunus persica HOM05D007833 ORTHO05D009855 2.7e-08 61.6 37 75.7
A03p48860 Brassica napus HOM05D000938 ORTHO05D001451 3.5e-08 61.2 44 68.2
BraA03t13987Z Brassica rapa HOM05D000938 ORTHO05D001451 3.5e-08 61.2 44 68.2
Aqoxy6G00608 Aquilegia oxysepala HOM05D007833 ORTHO05D009855 4.6e-08 60.8 37 75.7
CAN.G1682.20 Capsicum annuum HOM05D007833 ORTHO05D009855 4.6e-08 60.8 37 73.0
CiPaw.07G092800 Carya illinoinensis HOM05D007833 ORTHO05D009855 4.6e-08 60.8 44 70.5
CsaV3_6G037060 Cucumis sativus L. HOM05D007833 ORTHO05D009855 4.6e-08 60.8 37 78.4
Rhsim13G0023900 Rhododendron simsii HOM05D007833 ORTHO05D009855 4.6e-08 60.8 40 70.0
CARHR162190 Cardamine hirsuta HOM05D007833 ORTHO05D009855 6.0e-08 60.5 37 70.3
Oeu028084.1 Olea europaea HOM05D007833 ORTHO05D009855 6.0e-08 60.5 37 73.0
CSS0012022 Camellia sinensis var. sinensis HOM05D007833 ORTHO05D009855 7.9e-08 60.1 37 70.3
TPR.G26603 Trifolium pratense HOM05D007833 ORTHO05D009855 7.9e-08 60.1 41 65.9
Ah.04g166580 Amaranthus hybridus HOM05D007833 ORTHO05D009855 1.0e-07 59.7 40 65.0
AT3G52420 Arabidopsis thaliana HOM05D007833 ORTHO05D009855 1.0e-07 59.7 44 65.9
AL5G33070 Arabidopsis lyrata HOM05D007833 ORTHO05D009855 1.3e-07 59.3 44 68.2
Cfa006126 Carpinus fangiana HOM05D007833 ORTHO05D009855 1.3e-07 59.3 43 69.8
arahy.Tifrunner.gnm1.ann1.1H9ESI Arachis hypogaea HOM05D007833 ORTHO05D009855 1.8e-07 58.9 41 65.9
Ca_08575_v3 Cicer arietinum L. HOM05D007833 ORTHO05D009855 1.8e-07 58.9 41 65.9
PGSC0003DMG400001195 Solanum tuberosum HOM05D007833 ORTHO05D009855 2.3e-07 58.5 37 70.3
Migut.N02161 Erythranthe guttata HOM05D007833 ORTHO05D009855 3.0e-07 58.2 37 73.0
SalBow6G6192 Salvia bowleyana HOM05D007833 ORTHO05D009855 3.0e-07 58.2 37 73.0
Actinidia00743 Actinidia chinensis HOM05D002055 ORTHO05D002120 5.1e-07 57.4 37 70.3
Nitab4.5_0001028g0100 Nicotiana tabacum HOM05D007833 ORTHO05D009855 5.1e-07 57.4 37 67.6
Potri.017G127350 Populus trichocarpa HOM05D007833 ORTHO05D009855 8.7e-07 56.6 35 77.1
THA.LOC109116323 Tarenaya hassleriana HOM05D007833 ORTHO05D009855 1.5e-06 55.8 40 65.0
Lalb_Chr20g0107771 Lupinus albus HOM05D007833 ORTHO05D009855 3.3e-06 54.7 37 64.9
Nn4g26217 Nelumbo nucifera HOM05D007833 ORTHO05D009855 3.3e-06 54.7 37 64.9
vmacro02562 Vaccinium macrocarpon HOM05D007833 ORTHO05D009855 4.3e-06 54.3 37 62.2
Hma1.2p1_0628F.1_g192040 Hydrangea macrophylla HOM05D007833 ORTHO05D009855 5.6e-06 53.9 37 64.9
Peaxi162Scf00783g00321 Petunia axillaris HOM05D007833 ORTHO05D009855 5.6e-06 53.9 37 62.2
unitig_0.g1010 Utricularia gibba HOM05D007833 ORTHO05D009855 5.6e-06 53.9 37 64.9


User provided reference genes

Program Settings