Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR044G2313 Punica granatum HOM05D003999 ORTHO05D005219 6.0e-233 810.4 405 100.0
Eucgr.C02221 Eucalyptus grandis HOM05D003999 ORTHO05D005219 3.0e-46 190.3 314 41.7
Atru.chr7.755 Acer truncatum HOM05D003999 ORTHO05D005219 8.0e-44 182.2 307 41.7
Atru.chr7.776 Acer truncatum HOM05D003999 ORTHO05D005219 8.0e-44 182.2 307 41.7
Cfa013453 Carpinus fangiana HOM05D003999 ORTHO05D005219 1.6e-39 167.9 352 35.2
CiPaw.07G197100 Carya illinoinensis HOM05D003999 ORTHO05D005219 4.6e-39 166.4 351 34.2
Haze_22020 Corylus avellana HOM05D003999 ORTHO05D005219 1.3e-38 164.9 353 35.1
Duzib114G0910 Durio zibethinus HOM05D003999 ORTHO05D005219 1.9e-37 161.0 322 36.3
Ciclev10010423m.g Citrus clementina HOM05D003999 ORTHO05D005219 4.7e-36 156.4 345 33.3
Manes.06G019800 Manihot esculenta HOM05D003999 ORTHO05D005219 6.2e-36 156.0 299 35.8
Dinv41175 Davidia involucrata HOM05D003999 ORTHO05D005219 8.1e-36 155.6 347 33.7
TWI34G1954 Tripterygium wilfordii HOM05D003999 ORTHO05D005219 1.4e-35 154.8 309 34.3
COL.COLO4_08503 Corchorus olitorius HOM05D003999 ORTHO05D005219 3.1e-35 153.7 313 35.8
Thecc.10G174600 Theobroma cacao HOM05D003999 ORTHO05D005219 3.1e-35 153.7 322 35.7
CsaV3_1G031880 Cucumis sativus L. HOM05D003999 ORTHO05D005219 5.2e-35 152.9 308 38.0
Actinidia38494 Actinidia chinensis HOM05D003999 ORTHO05D005219 6.8e-35 152.5 358 33.8
TWI63G1413 Tripterygium wilfordii HOM05D003999 ORTHO05D005219 1.2e-34 151.8 362 32.3
CSS0024594 Camellia sinensis var. sinensis HOM05D003999 ORTHO05D005219 1.5e-34 151.4 340 35.3
FAN18G4269 Fragaria x ananassa HOM05D003999 ORTHO05D005219 2.0e-34 151.0 297 39.1
FAN13G0316 Fragaria x ananassa HOM05D003999 ORTHO05D005219 1.3e-33 148.3 259 41.3
FAN04G0885 Fragaria x ananassa HOM05D003999 ORTHO05D005219 2.4e-32 144.1 297 38.4
Prupe.1G075400 Prunus persica HOM05D003999 ORTHO05D005219 9.2e-32 142.1 303 36.0
RcHm_v2.0_Chr7g0219501 Rosa chinensis HOM05D003999 ORTHO05D005219 9.2e-32 142.1 257 40.9
MELO3C017428.2 Cucumis melo HOM05D003999 ORTHO05D005219 2.7e-31 140.6 262 39.3
Lj1g0014223 Lotus japonicus HOM05D003999 ORTHO05D005219 3.5e-31 140.2 308 33.8
vmacro05997 Vaccinium macrocarpon HOM05D003999 ORTHO05D005219 6.0e-31 139.4 325 34.5
CSS0017119 Camellia sinensis var. sinensis HOM05D003999 ORTHO05D005219 7.8e-31 139.0 336 34.8
Actinidia27131 Actinidia chinensis HOM05D003999 ORTHO05D005219 3.9e-30 136.7 342 32.7
Actinidia29951 Actinidia chinensis HOM05D003999 ORTHO05D005219 3.9e-30 136.7 342 32.7
Gohir.D06G185700 Gossypium hirsutum HOM05D003999 ORTHO05D005219 3.9e-30 136.7 321 34.3
TAR625G1146 Trochodendron aralioides HOM05D003999 ORTHO05D005219 1.5e-29 134.8 380 31.1
Gohir.A06G176100 Gossypium hirsutum HOM05D003999 ORTHO05D005219 2.5e-29 134.0 324 34.0
MD16G1248600 Malus domestica HOM05D003999 ORTHO05D005219 3.3e-29 133.7 292 34.9
Gorai.010G217300 Gossypium raimondii HOM05D003999 ORTHO05D005219 5.6e-29 132.9 322 34.2
Sc08g0004740 Simmondsia chinensis HOM05D003999 ORTHO05D005219 9.5e-29 132.1 352 30.4
Hma1.2p1_1326F.1_g275830 Hydrangea macrophylla HOM05D003999 ORTHO05D005219 1.6e-28 131.3 332 31.9
MD13G1241700 Malus domestica HOM05D003999 ORTHO05D005219 2.1e-28 131.0 269 36.8
Sed0001699 Sechium edule HOM05D003999 ORTHO05D005219 2.1e-28 131.0 308 33.1
Ca_15280_v3 Cicer arietinum L. HOM05D003999 ORTHO05D005219 6.2e-28 129.4 334 31.7
Rhsim03G0266100 Rhododendron simsii HOM05D003999 ORTHO05D005219 8.1e-28 129.0 327 33.6
Duzib106G1697 Durio zibethinus HOM05D003999 ORTHO05D005219 1.1e-27 128.6 316 32.3
Sed0015737 Sechium edule HOM05D003999 ORTHO05D005219 1.8e-27 127.9 262 37.4
Glyma.06G001400 Glycine max HOM05D003999 ORTHO05D005219 4.0e-27 126.7 327 31.8
CiPaw.08G032500 Carya illinoinensis HOM05D003999 ORTHO05D005219 1.2e-26 125.2 294 34.7
Glyma.04G001900 Glycine max HOM05D003999 ORTHO05D005219 2.6e-26 124.0 298 31.2
Gorai.011G210800 Gossypium raimondii HOM05D003999 ORTHO05D005219 2.6e-26 124.0 322 29.8
Potri.006G075400 Populus trichocarpa HOM05D003999 ORTHO05D005219 3.4e-26 123.6 286 36.4
Psat5g048320 Pisum sativum HOM05D003999 ORTHO05D005219 4.4e-26 123.2 304 31.9
Sabra06G0056300 Salix brachista HOM05D003999 ORTHO05D005219 5.8e-26 122.9 293 36.5
arahy.Tifrunner.gnm1.ann1.K74ZDU Arachis hypogaea HOM05D003999 ORTHO05D005219 7.6e-26 122.5 331 30.5
Gohir.A10G181100 Gossypium hirsutum HOM05D003999 ORTHO05D005219 9.9e-26 122.1 322 31.1
Gohir.D10G188000 Gossypium hirsutum HOM05D003999 ORTHO05D005219 9.9e-26 122.1 322 30.7
arahy.Tifrunner.gnm1.ann1.M9AABA Arachis hypogaea HOM05D003999 ORTHO05D005219 1.4e-24 118.2 331 30.2
Nitab4.5_0001583g0100 Nicotiana tabacum HOM05D003999 ORTHO05D005219 1.4e-24 118.2 305 33.1
Peaxi162Scf00670g00347 Petunia axillaris HOM05D003999 ORTHO05D005219 1.4e-24 118.2 316 32.6
Sabra18G0116200 Salix brachista HOM05D003999 ORTHO05D005219 1.4e-24 118.2 295 34.2
Cc00_g03720 Coffea canephora HOM05D003999 ORTHO05D005219 7.1e-24 115.9 353 30.3
Nitab4.5_0001225g0140 Nicotiana tabacum HOM05D003999 ORTHO05D005219 9.2e-24 115.5 305 32.5
MSTRG.26544 Avicennia marina HOM05D003999 ORTHO05D005219 4.6e-23 113.2 286 32.5
Phvul.009G117100 Phaseolus vulgaris HOM05D003999 ORTHO05D005219 6.0e-23 112.8 290 32.1
Potri.018G142300 Populus trichocarpa HOM05D003999 ORTHO05D005219 6.0e-23 112.8 278 34.5
PGSC0003DMG400021118 Solanum tuberosum HOM05D003999 ORTHO05D005219 6.0e-23 112.8 307 32.6
Solyc02g069980.4 Solanum lycopersicum HOM05D003999 ORTHO05D005219 8.7e-22 109.0 307 32.2
VMungo1309G0585 Vigna mungo HOM05D003999 ORTHO05D005219 8.7e-22 109.0 319 30.4
Lalb_Chr11g0061221 Lupinus albus HOM05D003999 ORTHO05D005219 1.5e-21 108.2 329 30.1
Nn8g40781 Nelumbo nucifera HOM05D003999 ORTHO05D005219 2.5e-21 107.5 155 43.2
Cc06_g20850 Coffea canephora HOM05D003999 ORTHO05D005219 4.3e-21 106.7 263 33.5
Migut.L01882 Erythranthe guttata HOM05D003999 ORTHO05D005219 4.3e-21 106.7 276 31.5
FAN08G2100 Fragaria x ananassa HOM05D003999 ORTHO05D005219 4.3e-21 106.7 270 34.8
Sopen02g019140 Solanum pennellii HOM05D003999 ORTHO05D005219 7.3e-21 105.9 314 30.9
Medtr3g100350 Medicago truncatula HOM05D003999 ORTHO05D005219 9.6e-21 105.5 329 28.3
TAR626G1281 Trochodendron aralioides HOM05D003999 ORTHO05D005219 1.6e-20 104.8 384 30.7
DCAR_020148 Daucus carota HOM05D003999 ORTHO05D005219 2.1e-20 104.4 339 29.5
FvH4_5g27730 Fragaria vesca HOM05D003999 ORTHO05D005219 2.1e-20 104.4 306 32.4
AUR62027455 Chenopodium quinoa HOM05D003999 ORTHO05D005219 6.2e-20 102.8 299 29.4
Hund06701 Selenicereus undatus HOM05D003999 ORTHO05D005219 6.2e-20 102.8 341 29.3
CAN.G79.26 Capsicum annuum HOM05D003999 ORTHO05D005219 8.1e-20 102.4 307 30.9
Oeu064556.1 Olea europaea HOM05D003999 ORTHO05D005219 8.1e-20 102.4 247 34.4
EL10Ac8g19270 Beta vulgaris HOM05D003999 ORTHO05D005219 1.1e-19 102.1 312 30.8
ECA240G0372 Erigeron canadensis HOM05D003999 ORTHO05D005219 3.1e-19 100.5 325 31.4
AUR62031249 Chenopodium quinoa HOM05D003999 ORTHO05D005219 9.0e-19 99.0 301 29.9
TAR383G0399 Trochodendron aralioides HOM05D003999 ORTHO05D005219 3.4e-18 97.1 392 27.6
MSTRG.10441 Avicennia marina HOM05D003999 ORTHO05D005219 7.6e-18 95.9 281 28.8
Aqoxy7G02806 Aquilegia oxysepala HOM05D003999 ORTHO05D005219 2.2e-17 94.4 347 28.0
SGA_v2.0_scaffold231G43410 Striga asiatica HOM05D003999 ORTHO05D005219 3.2e-16 90.5 161 38.5
TPR.G6349 Trifolium pratense HOM05D003999 ORTHO05D005219 4.2e-16 90.1 371 25.9
DCAR_014666 Daucus carota HOM05D003999 ORTHO05D005219 5.4e-16 89.7 157 40.1
unitig_8.g4939 Utricularia gibba HOM05D003999 ORTHO05D005219 1.6e-15 88.2 304 29.6
unitig_578.g16064 Utricularia gibba HOM05D003999 ORTHO05D005219 3.5e-15 87.0 292 29.8
MBI16_g05835_MAGBIO Magnolia biondii HOM05D003999 ORTHO05D005219 7.8e-15 85.9 341 27.6
Haze_18974 Corylus avellana HOM05D003999 ORTHO05D005219 2.1e-12 77.8 269 30.1
THA.LOC104814650 Tarenaya hassleriana HOM05D003999 ORTHO05D005219 2.1e-12 77.8 162 35.8
DCAR_018034 Daucus carota HOM05D003999 ORTHO05D005219 3.6e-12 77.0 278 26.6
Migut.J00798 Erythranthe guttata HOM05D003999 ORTHO05D005219 4.0e-11 73.6 156 37.8
Haze_18980 Corylus avellana HOM05D003999 ORTHO05D005219 5.3e-11 73.2 320 27.5
Os04g0425100 Oryza sativa ssp. japonica HOM05D003999 ORTHO05D005219 5.3e-11 73.2 177 31.6
Cfa020676 Carpinus fangiana HOM05D003999 ORTHO05D005219 9.0e-11 72.4 296 28.7
Ciclev10008331m.g Citrus clementina HOM05D003999 ORTHO05D005219 2.0e-10 71.2 128 34.4
HanXRQChr09g0244721 Helianthus annuus HOM05D003999 ORTHO05D005219 4.5e-10 70.1 131 36.6
Thecc.09G004800 Theobroma cacao HOM05D003999 ORTHO05D005219 5.8e-10 69.7 110 38.2
PSO170G0656 Papaver somniferum HOM05D003999 ORTHO05D005219 7.6e-10 69.3 143 32.9
HPP92_010790 Vanilla planifolia HOM05D003999 ORTHO05D005219 7.6e-10 69.3 154 31.8
ATR0681G357 Amborella trichopoda HOM05D003999 ORTHO05D005219 1.7e-09 68.2 159 36.5
SalBow5G4070 Salvia bowleyana HOM05D003999 ORTHO05D005219 1.7e-09 68.2 255 29.8
SEGI_29375 Sequoiadendron giganteum HOM05D003999 ORTHO05D005219 2.2e-09 67.8 145 31.7
CiPaw.15G150400 Carya illinoinensis HOM05D003999 ORTHO05D005219 3.8e-09 67.0 127 39.4
Lsat_1_v5_gn_7_51121 Lactuca sativa HOM05D003999 ORTHO05D005219 3.8e-09 67.0 138 36.2
Sabra06G0215100 Salix brachista HOM05D003999 ORTHO05D005219 1.1e-08 65.5 110 39.1
Zm00001eb002000 Zea mays HOM05D003999 ORTHO05D005219 1.1e-08 65.5 180 31.7
BraA09t36876Z Brassica rapa HOM05D003999 ORTHO05D005219 1.4e-08 65.1 92 38.0
SEGI_17596 Sequoiadendron giganteum HOM05D003999 ORTHO05D005219 1.4e-08 65.1 103 35.9
FvH4_5g18011 Fragaria vesca HOM05D003999 ORTHO05D005219 1.9e-08 64.7 101 36.6
FAN18G0538 Fragaria x ananassa HOM05D003999 ORTHO05D005219 1.9e-08 64.7 101 36.6
MBI13_g34042_MAGBIO Magnolia biondii HOM05D003999 ORTHO05D005219 1.9e-08 64.7 308 26.3
Potri.006G277400 Populus trichocarpa HOM05D003999 ORTHO05D005219 1.9e-08 64.7 103 38.8
Prupe.5G240400 Prunus persica HOM05D003999 ORTHO05D005219 2.4e-08 64.3 97 38.1
BcaB07g31614 Brassica carinata HOM05D003999 ORTHO05D005219 3.2e-08 63.9 102 34.3
Thhalv10022602m.g Eutrema salsugineum HOM05D003999 ORTHO05D005219 3.2e-08 63.9 137 30.7
FAN13G0118 Fragaria x ananassa HOM05D003999 ORTHO05D005219 7.1e-08 62.8 101 36.6
Mapoly0046s0104 Marchantia polymorpha HOM05D003999 ORTHO05D005219 9.3e-08 62.4 73 39.7
RcHm_v2.0_Chr7g0177591 Rosa chinensis HOM05D003999 ORTHO05D005219 1.2e-07 62.0 124 34.7
C09p14530 Brassica napus HOM05D003999 ORTHO05D005219 1.6e-07 61.6 105 32.4
C07p03110 Brassica napus HOM05D003999 ORTHO05D005219 3.5e-07 60.5 113 33.6
BolC7t40703H Brassica oleracea HOM05D003999 ORTHO05D005219 3.5e-07 60.5 113 33.6
Carub.0003s3349 Capsella rubella HOM05D003999 ORTHO05D005219 3.5e-07 60.5 182 26.4
BcaC04g22860 Brassica carinata HOM05D003999 ORTHO05D005219 4.6e-07 60.1 84 34.5
BcaC06g36543 Brassica carinata HOM05D003999 ORTHO05D005219 4.6e-07 60.1 113 33.6
A07p01530 Brassica napus HOM05D003999 ORTHO05D005219 6.0e-07 59.7 109 33.9
BraA07t27954Z Brassica rapa HOM05D003999 ORTHO05D005219 6.0e-07 59.7 109 33.9
Zm00001eb274650 Zea mays HOM05D003999 ORTHO05D005219 7.9e-07 59.3 144 30.6
Aa31LG8G16300 Aethionema arabicum HOM05D003999 ORTHO05D005219 1.3e-06 58.5 74 35.1
Atru.chr7.2670 Acer truncatum HOM05D003999 ORTHO05D005219 2.3e-06 57.8 81 37.0
AT2G19260 Arabidopsis thaliana HOM05D003999 ORTHO05D005219 2.3e-06 57.8 167 26.3
BcaB03g16715 Brassica carinata HOM05D003999 ORTHO05D005219 3.0e-06 57.4 104 30.8
MD06G1235600 Malus domestica HOM05D003999 ORTHO05D005219 3.0e-06 57.4 90 40.0
ATR0626G364 Amborella trichopoda HOM05D003999 ORTHO05D005219 3.9e-06 57.0 332 24.4
BolC9t54356H Brassica oleracea HOM05D003999 ORTHO05D005219 3.9e-06 57.0 102 29.4
CARHR109720 Cardamine hirsuta HOM05D003999 ORTHO05D005219 3.9e-06 57.0 122 30.3
A09p12320 Brassica napus HOM05D003999 ORTHO05D005219 6.7e-06 56.2 87 33.3


User provided reference genes

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