Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR044G2231 Punica granatum HOM05D006203 ORTHO05D007675 6.5e-246 853.6 426 100.0
PGR100G0007 Punica granatum HOM05D006203 ORTHO05D007675 6.5e-246 853.6 426 100.0
Eucgr.F04230 Eucalyptus grandis HOM05D006203 ORTHO05D007675 2.1e-199 699.1 426 80.5
Sabra05G0147700 Salix brachista HOM05D006203 ORTHO05D007675 1.0e-190 670.2 420 77.6
QL02p038832 Quercus lobata HOM05D006203 ORTHO05D007675 3.0e-190 668.7 426 76.8
Potri.005G193300 Populus trichocarpa HOM05D006203 ORTHO05D007675 3.9e-190 668.3 420 77.6
Potri.002G066900 Populus trichocarpa HOM05D006203 ORTHO05D007675 1.1e-189 666.8 418 77.5
TWI60G1081 Tripterygium wilfordii HOM05D006203 ORTHO05D007675 1.3e-188 663.3 424 76.2
Hma1.2p1_0105F.1_g050570 Hydrangea macrophylla HOM05D006203 ORTHO05D007675 8.1e-188 660.6 419 76.4
Thecc.08G154300 Theobroma cacao HOM05D006203 ORTHO05D007675 1.8e-187 659.4 427 75.2
Manes.02G180400 Manihot esculenta HOM05D006203 ORTHO05D007675 4.0e-187 658.3 429 75.8
Cfa018314 Carpinus fangiana HOM05D006203 ORTHO05D007675 1.7e-185 652.9 423 76.6
CiPaw.16G011200 Carya illinoinensis HOM05D006203 ORTHO05D007675 1.7e-185 652.9 423 76.6
MELO3C025014.2 Cucumis melo HOM05D006203 ORTHO05D007675 2.4e-184 649.0 421 75.5
Ciclev10001246m.g Citrus clementina HOM05D006203 ORTHO05D007675 9.3e-184 647.1 428 74.5
Cpa.g.sc21.210 Carica papaya HOM05D006203 ORTHO05D007675 1.6e-183 646.4 421 74.1
CsaV3_6G002690 Cucumis sativus L. HOM05D006203 ORTHO05D007675 6.0e-183 644.4 430 73.7
Duzib116G0092 Durio zibethinus HOM05D006203 ORTHO05D007675 7.9e-183 644.0 427 73.5
ClCG08G002400 Citrullus lanatus HOM05D006203 ORTHO05D007675 1.0e-182 643.7 430 73.7
Lj5g0013006 Lotus japonicus HOM05D006203 ORTHO05D007675 1.3e-182 643.3 421 75.8
VMungo0720G1833 Vigna mungo HOM05D006203 ORTHO05D007675 4.3e-181 638.3 421 73.9
CANSAT25G3154 Cannabis sativa HOM05D006203 ORTHO05D007675 2.1e-180 636.0 419 74.5
Glyma.20G167800 Glycine max HOM05D006203 ORTHO05D007675 3.7e-180 635.2 422 74.2
COL.COLO4_29853 Corchorus olitorius HOM05D006203 ORTHO05D007675 1.1e-179 633.6 458 68.8
Gohir.A02G112707 Gossypium hirsutum HOM05D006203 ORTHO05D007675 3.1e-179 632.1 427 73.1
Actinidia29535 Actinidia chinensis HOM05D006203 ORTHO05D007675 4.0e-179 631.7 421 72.9
Medtr1g098650 Medicago truncatula HOM05D006203 ORTHO05D007675 4.0e-179 631.7 423 72.8
TAR628G0500 Trochodendron aralioides HOM05D006203 ORTHO05D007675 4.0e-179 631.7 421 73.4
Atru.chr13.2086 Acer truncatum HOM05D006203 ORTHO05D007675 9.0e-179 630.6 419 73.5
MBI09_g13282_MAGBIO Magnolia biondii HOM05D006203 ORTHO05D007675 1.2e-178 630.2 426 72.3
Gorai.002G055700 Gossypium raimondii HOM05D006203 ORTHO05D007675 1.5e-178 629.8 427 73.3
Prupe.8G033400 Prunus persica HOM05D006203 ORTHO05D007675 1.5e-178 629.8 423 73.8
Ca_10680_v3 Cicer arietinum L. HOM05D006203 ORTHO05D007675 4.5e-178 628.2 421 73.9
Gohir.D03G060606 Gossypium hirsutum HOM05D006203 ORTHO05D007675 5.8e-178 627.9 427 73.1
Psat1g027320 Pisum sativum HOM05D006203 ORTHO05D007675 5.8e-178 627.9 421 73.6
TPR.G17026 Trifolium pratense HOM05D006203 ORTHO05D007675 1.3e-177 626.7 420 73.8
Sed0022684 Sechium edule HOM05D006203 ORTHO05D007675 2.9e-177 625.5 430 71.9
CSS0037443 Camellia sinensis var. sinensis HOM05D006203 ORTHO05D007675 3.8e-177 625.2 421 72.7
Lj4C698G9 Lonicera japonica HOM05D006203 ORTHO05D007675 4.9e-177 624.8 424 73.3
GSVIVG01034547001 Vitis vinifera HOM05D006203 ORTHO05D007675 4.9e-177 624.8 423 73.0
CSS0039383 Camellia sinensis var. sinensis HOM05D006203 ORTHO05D007675 1.4e-176 623.2 421 72.7
CDE06G0803 Ceratophyllum demersum HOM05D006203 ORTHO05D007675 1.4e-176 623.2 421 71.0
Phvul.007G080700 Phaseolus vulgaris HOM05D006203 ORTHO05D007675 1.4e-176 623.2 421 72.4
Glyma.10G224051 Glycine max HOM05D006203 ORTHO05D007675 1.2e-175 620.2 412 73.8
Rhsim04G0148800 Rhododendron simsii HOM05D006203 ORTHO05D007675 2.7e-175 619.0 439 70.8
MD10G1028400 Malus domestica HOM05D006203 ORTHO05D007675 1.0e-174 617.1 427 71.9
EL10Ac1g01566 Beta vulgaris HOM05D006203 ORTHO05D007675 1.3e-174 616.7 422 70.9
Lalb_Chr21g0305501 Lupinus albus HOM05D006203 ORTHO05D007675 1.8e-174 616.3 427 72.6
Nitab4.5_0002497g0040 Nicotiana tabacum HOM05D006203 ORTHO05D007675 2.3e-174 615.9 422 71.8
AUR62026688 Chenopodium quinoa HOM05D006203 ORTHO05D007675 1.9e-173 612.8 421 70.1
AUR62040604 Chenopodium quinoa HOM05D006203 ORTHO05D007675 1.9e-173 612.8 432 69.0
SalBow7G3786 Salvia bowleyana HOM05D006203 ORTHO05D007675 2.5e-173 612.5 427 71.4
MD05G1027600 Malus domestica HOM05D006203 ORTHO05D007675 7.4e-173 610.9 427 71.9
SalBow7G2343 Salvia bowleyana HOM05D006203 ORTHO05D007675 2.1e-172 609.4 427 71.2
Sopen04g027530 Solanum pennellii HOM05D006203 ORTHO05D007675 2.1e-172 609.4 424 71.2
SGA_v2.0_scaffold24G10302 Striga asiatica HOM05D006203 ORTHO05D007675 2.1e-172 609.4 421 70.5
CAN.G1215.8 Capsicum annuum HOM05D006203 ORTHO05D007675 1.1e-171 607.1 422 71.6
Solyc04g071550.2 Solanum lycopersicum HOM05D006203 ORTHO05D007675 1.8e-171 606.3 424 70.8
Oeu002058.2 Olea europaea HOM05D006203 ORTHO05D007675 4.0e-171 605.1 457 67.2
PGSC0003DMG402024096 Solanum tuberosum HOM05D006203 ORTHO05D007675 6.9e-171 604.4 424 70.5
RcHm_v2.0_Chr6g0275101 Rosa chinensis HOM05D006203 ORTHO05D007675 7.6e-170 600.9 421 70.3
Nitab4.5_0001187g0150 Nicotiana tabacum HOM05D006203 ORTHO05D007675 1.0e-169 600.5 445 67.6
PSO017G3146 Papaver somniferum HOM05D006203 ORTHO05D007675 1.3e-169 600.1 437 68.4
PSO063G4112 Papaver somniferum HOM05D006203 ORTHO05D007675 1.3e-169 600.1 437 68.2
Aa31LG6G9900 Aethionema arabicum HOM05D006203 ORTHO05D007675 2.2e-169 599.4 418 69.9
arahy.Tifrunner.gnm1.ann1.YI7QGP Arachis hypogaea HOM05D006203 ORTHO05D007675 2.9e-169 599.0 427 70.5
Thhalv10004157m.g Eutrema salsugineum HOM05D006203 ORTHO05D007675 3.8e-169 598.6 421 69.8
arahy.Tifrunner.gnm1.ann1.1SB772 Arachis hypogaea HOM05D006203 ORTHO05D007675 6.5e-169 597.8 427 70.5
BcaB07g33983 Brassica carinata HOM05D006203 ORTHO05D007675 1.4e-168 596.7 433 69.3
Sp1g32440 Schrenkiella parvula HOM05D006203 ORTHO05D007675 7.1e-168 594.3 421 69.8
BcaC03g14869 Brassica carinata HOM05D006203 ORTHO05D007675 6.0e-167 591.3 433 68.8
THA.LOC104803037 Tarenaya hassleriana HOM05D006203 ORTHO05D007675 6.0e-167 591.3 423 69.5
C02p23400 Brassica napus HOM05D006203 ORTHO05D007675 7.9e-167 590.9 433 68.8
BolC2t08473H Brassica oleracea HOM05D006203 ORTHO05D007675 7.9e-167 590.9 433 68.8
A02p14450 Brassica napus HOM05D006203 ORTHO05D007675 3.9e-166 588.6 433 68.8
HanXRQChr11g0320311 Helianthus annuus HOM05D006203 ORTHO05D007675 8.7e-166 587.4 419 69.7
DCAR_014434 Daucus carota HOM05D006203 ORTHO05D007675 1.5e-165 586.6 432 66.9
DCAR_014436 Daucus carota HOM05D006203 ORTHO05D007675 1.5e-165 586.6 432 66.9
Migut.C00987 Erythranthe guttata HOM05D006203 ORTHO05D007675 1.5e-165 586.6 431 67.7
Lsat_1_v5_gn_9_41100 Lactuca sativa HOM05D006203 ORTHO05D007675 3.3e-165 585.5 420 69.0
Zm00001eb062160 Zea mays HOM05D006203 ORTHO05D007675 3.3e-165 585.5 427 68.4
AL1G51640 Arabidopsis lyrata HOM05D006203 ORTHO05D007675 1.3e-164 583.6 422 68.2
FvH4_2g13470 Fragaria vesca HOM05D006203 ORTHO05D007675 1.6e-164 583.2 422 70.6
Carub.0001s3458 Capsella rubella HOM05D006203 ORTHO05D007675 2.8e-164 582.4 422 67.8
CARHR035390 Cardamine hirsuta HOM05D006203 ORTHO05D007675 1.1e-163 580.5 422 67.1
FAN24G2615 Fragaria x ananassa HOM05D006203 ORTHO05D007675 4.1e-163 578.6 422 70.1
Oeu051272.1 Olea europaea HOM05D006203 ORTHO05D007675 5.3e-163 578.2 425 68.0
Hund17446 Selenicereus undatus HOM05D006203 ORTHO05D007675 5.3e-163 578.2 469 62.3
FAN27G1038 Fragaria x ananassa HOM05D006203 ORTHO05D007675 1.5e-162 576.6 422 69.9
AT1G43580 Arabidopsis thaliana HOM05D006203 ORTHO05D007675 2.6e-162 575.9 422 67.3
Os04g0423700 Oryza sativa ssp. japonica HOM05D006203 ORTHO05D007675 5.9e-162 574.7 421 67.5
FAN15G3573 Fragaria x ananassa HOM05D006203 ORTHO05D007675 7.6e-162 574.3 422 69.7
ECA232G0861 Erigeron canadensis HOM05D006203 ORTHO05D007675 1.1e-160 570.5 423 67.8
vmacro12408 Vaccinium macrocarpon HOM05D006203 ORTHO05D007675 1.4e-160 570.1 531 57.6
Ah.05g168000 Amaranthus hybridus HOM05D006203 ORTHO05D007675 2.5e-160 569.3 419 66.6
ATR0820G052 Amborella trichopoda HOM05D006203 ORTHO05D007675 4.6e-159 565.1 420 65.5
Peaxi162Scf00599g00123 Petunia axillaris HOM05D006203 ORTHO05D007675 1.1e-155 553.9 420 66.9
Zm00001eb243320 Zea mays HOM05D006203 ORTHO05D007675 4.5e-154 548.5 426 62.9
SEGI_28248 Sequoiadendron giganteum HOM05D006203 ORTHO05D007675 4.2e-152 542.0 432 63.2
Os02g0543100 Oryza sativa ssp. japonica HOM05D006203 ORTHO05D007675 1.5e-149 533.5 417 65.2
Aqoxy5G02059 Aquilegia oxysepala HOM05D006203 ORTHO05D007675 2.6e-149 532.7 423 64.5
Haze_17763 Corylus avellana HOM05D006203 ORTHO05D007675 4.4e-141 505.4 334 75.1
AagrBONN_evm.TU.Sc2ySwM_344.5191 Anthoceros agrestis HOM05D006203 ORTHO05D007675 1.4e-139 500.4 426 58.5
HPP92_014433 Vanilla planifolia HOM05D006203 ORTHO05D007675 4.5e-138 495.4 427 60.0
SMO165G0112 Selaginella moellendorffii HOM05D006203 ORTHO05D007675 2.5e-136 489.6 430 58.1
Cc10_g14900 Coffea canephora HOM05D006203 ORTHO05D007675 2.1e-135 486.5 357 68.1
unitig_82.g27121 Utricularia gibba HOM05D006203 ORTHO05D007675 4.4e-133 478.8 430 60.5
Mapoly0036s0040 Marchantia polymorpha HOM05D006203 ORTHO05D007675 7.2e-128 461.5 428 54.0
Pp3c10_9040 Physcomitrium patens HOM05D006203 ORTHO05D007675 2.0e-125 453.4 423 54.1
Sc02g0003970 Simmondsia chinensis HOM05D006203 ORTHO05D007675 8.3e-124 448.0 298 73.5
SHI09072 Sapria himalayana HOM05D006203 ORTHO05D007675 5.4e-123 445.3 352 65.1
Pp3c1_26540 Physcomitrium patens HOM05D006203 ORTHO05D007675 5.5e-120 435.3 434 49.8
Sed0004557 Sechium edule HOM05D006203 ORTHO05D007675 7.2e-120 434.9 434 55.1
Dinv41071 Davidia involucrata HOM05D006203 ORTHO05D007675 6.8e-118 428.3 262 79.0
BcaC08g42813 Brassica carinata HOM05D006203 ORTHO05D007675 7.3e-112 408.3 419 53.9
Dinv41073 Davidia involucrata HOM05D006203 ORTHO05D007675 2.1e-111 406.8 256 77.7
CBR_g4804 Chara braunii HOM05D006203 ORTHO05D007675 1.2e-85 321.2 416 44.2
Nn5g28766 Nelumbo nucifera HOM05D006203 ORTHO05D007675 6.4e-84 315.5 196 77.6
Zm00001eb440740 Zea mays HOM05D006203 ORTHO05D007675 1.2e-77 294.7 243 59.7
C06p00250 Brassica napus HOM05D006203 ORTHO05D007675 9.3e-67 258.5 291 50.9
MSTRG.1091 Avicennia marina HOM05D006203 ORTHO05D007675 1.5e-64 251.1 185 68.6
Dinv41070 Davidia involucrata HOM05D006203 ORTHO05D007675 4.1e-46 189.9 137 68.6
PGSC0003DMG401024096 Solanum tuberosum HOM05D006203 ORTHO05D007675 6.7e-33 146.0 92 70.7
SHI09073 Sapria himalayana HOM05D006203 ORTHO05D007675 7.4e-32 142.5 92 68.5
BraA02t06509Z Brassica rapa HOM05D006203 ORTHO05D007675 6.3e-31 139.4 101 69.3
Peaxi162Scf00599g00124 Petunia axillaris HOM05D006203 ORTHO05D007675 8.0e-26 122.5 85 65.9
PSO063G4868 Papaver somniferum HOM05D006203 ORTHO05D007675 7.2e-11 72.8 91 46.2
Cre01.g033050 Chlamydomonas reinhardtii HOM05D006203 ORTHO05D007675 2.3e-09 67.8 363 24.0
CSS0028086 Camellia sinensis var. sinensis HOM05D001336 ORTHO05D001211 6.8e-09 66.2 41 73.2


User provided reference genes

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