Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR044G2110 Punica granatum HOM05D007280 ORTHO05D009108 5.4e-233 811.2 414 100.0
Eucgr.B02618 Eucalyptus grandis HOM05D007280 ORTHO05D009108 2.7e-112 410.2 399 54.4
Sabra08G0108200 Salix brachista HOM05D007280 ORTHO05D009108 4.6e-99 366.3 418 46.9
Nn4g24834 Nelumbo nucifera HOM05D007280 ORTHO05D009108 3.6e-96 356.7 426 46.5
Cpa.g.sc2.97 Carica papaya HOM05D007280 ORTHO05D009108 1.0e-95 355.1 423 49.4
Ca_12458_v3 Cicer arietinum L. HOM05D007280 ORTHO05D009108 2.6e-94 350.5 426 45.8
Psat6g095680 Pisum sativum HOM05D007280 ORTHO05D009108 1.9e-92 344.4 423 47.3
Sopen04g003730 Solanum pennellii HOM05D007280 ORTHO05D009108 2.0e-91 340.9 436 46.6
Hma1.2p1_0319F.1_g123900 Hydrangea macrophylla HOM05D007280 ORTHO05D009108 4.6e-91 339.7 430 45.8
Haze_01575 Corylus avellana HOM05D007280 ORTHO05D009108 7.8e-91 339.0 423 46.8
Solyc04g008570.4 Solanum lycopersicum HOM05D007280 ORTHO05D009108 7.8e-91 339.0 436 46.3
PGSC0003DMG400031369 Solanum tuberosum HOM05D007280 ORTHO05D009108 7.8e-91 339.0 441 46.3
Lj2g0005518 Lotus japonicus HOM05D007280 ORTHO05D009108 5.0e-90 336.3 433 44.6
Thecc.09G239200 Theobroma cacao HOM05D007280 ORTHO05D009108 6.6e-90 335.9 419 44.6
Rhsim04G0168900 Rhododendron simsii HOM05D007280 ORTHO05D009108 8.6e-90 335.5 423 47.3
Potri.010G098700 Populus trichocarpa HOM05D007280 ORTHO05D009108 1.1e-89 335.1 424 43.2
Peaxi162Scf00329g00097 Petunia axillaris HOM05D007280 ORTHO05D009108 5.6e-89 332.8 336 50.0
TPR.G35854 Trifolium pratense HOM05D007280 ORTHO05D009108 2.8e-88 330.5 424 44.1
Lj3P855T51 Lonicera japonica HOM05D007280 ORTHO05D009108 4.7e-88 329.7 372 47.3
Cfa015100 Carpinus fangiana HOM05D007280 ORTHO05D009108 1.4e-87 328.2 413 46.0
Phvul.003G013000 Phaseolus vulgaris HOM05D007280 ORTHO05D009108 5.2e-87 326.2 428 44.6
Ciclev10004581m.g Citrus clementina HOM05D007280 ORTHO05D009108 2.0e-86 324.3 418 43.5
Prupe.1G342100 Prunus persica HOM05D007280 ORTHO05D009108 3.4e-86 323.6 392 48.0
FAN12G0470 Fragaria x ananassa HOM05D007280 ORTHO05D009108 5.8e-86 322.8 365 47.7
Medtr1g033840 Medicago truncatula HOM05D007280 ORTHO05D009108 5.8e-86 322.8 425 44.7
Cc11_g02870 Coffea canephora HOM05D007280 ORTHO05D009108 1.3e-85 321.6 426 44.6
FvH4_4g36140 Fragaria vesca HOM05D007280 ORTHO05D009108 1.7e-85 321.2 365 47.7
FAN07G2371 Fragaria x ananassa HOM05D007280 ORTHO05D009108 4.9e-85 319.7 365 47.4
CAN.G458.1 Capsicum annuum HOM05D007280 ORTHO05D009108 1.4e-84 318.2 449 43.4
Sabra08G0108600 Salix brachista HOM05D007280 ORTHO05D009108 1.9e-84 317.8 419 43.0
VMungo1215G2162 Vigna mungo HOM05D007280 ORTHO05D009108 1.6e-83 314.7 419 43.2
Glyma.20G010600 Glycine max HOM05D007280 ORTHO05D009108 2.7e-83 313.9 376 47.3
MD16G1008400 Malus domestica HOM05D007280 ORTHO05D009108 7.8e-83 312.4 428 41.8
MSTRG.17728 Avicennia marina HOM05D007280 ORTHO05D009108 1.7e-82 311.2 443 42.4
Lalb_Chr17g0338341 Lupinus albus HOM05D007280 ORTHO05D009108 1.7e-82 311.2 378 46.6
HanXRQChr16g0526501 Helianthus annuus HOM05D007280 ORTHO05D009108 3.0e-82 310.5 436 41.1
DCAR_023520 Daucus carota HOM05D007280 ORTHO05D009108 6.6e-82 309.3 423 44.0
MD13G1010900 Malus domestica HOM05D007280 ORTHO05D009108 1.9e-81 307.8 414 42.0
CSS0013384 Camellia sinensis var. sinensis HOM05D007280 ORTHO05D009108 1.2e-80 305.1 441 42.9
THA.LOC104819105 Tarenaya hassleriana HOM05D007280 ORTHO05D009108 3.8e-77 293.5 379 45.6
TWI74G1184 Tripterygium wilfordii HOM05D007280 ORTHO05D009108 1.4e-76 291.6 413 43.1
Thhalv10016019m.g Eutrema salsugineum HOM05D007280 ORTHO05D009108 4.3e-73 280.0 369 45.5
ECA246G2688 Erigeron canadensis HOM05D007280 ORTHO05D009108 1.4e-71 275.0 415 41.7
Gorai.006G126500 Gossypium raimondii HOM05D007280 ORTHO05D009108 3.4e-70 270.4 425 40.0
AT5G13770 Arabidopsis thaliana HOM05D007280 ORTHO05D009108 5.8e-70 269.6 369 43.4
Gohir.D09G108900 Gossypium hirsutum HOM05D007280 ORTHO05D009108 5.8e-70 269.6 424 39.6
Carub.0006s1195 Capsella rubella HOM05D007280 ORTHO05D009108 1.3e-69 268.5 366 42.9
Gohir.D06G095050 Gossypium hirsutum HOM05D007280 ORTHO05D009108 2.9e-69 267.3 426 39.2
Os04g0583101 Oryza sativa ssp. japonica HOM05D007280 ORTHO05D009108 2.9e-69 267.3 417 39.1
AL6G24390 Arabidopsis lyrata HOM05D007280 ORTHO05D009108 8.4e-69 265.8 367 43.1
Sabra10G0071200 Salix brachista HOM05D007280 ORTHO05D009108 1.1e-68 265.4 425 36.9
Sp6g30250 Schrenkiella parvula HOM05D007280 ORTHO05D009108 3.2e-68 263.8 365 43.0
Duzib168G0083 Durio zibethinus HOM05D007280 ORTHO05D009108 4.2e-68 263.5 415 38.8
Aa31sc65G20 Aethionema arabicum HOM05D007280 ORTHO05D009108 5.4e-68 263.1 369 42.5
Potri.008G142900 Populus trichocarpa HOM05D007280 ORTHO05D009108 5.4e-68 263.1 419 36.8
Lsat_1_v5_gn_3_27640 Lactuca sativa HOM05D007280 ORTHO05D009108 3.5e-67 260.4 365 42.2
C02p06420 Brassica napus HOM05D007280 ORTHO05D009108 2.3e-66 257.7 383 40.7
BolC2t06588H Brassica oleracea HOM05D007280 ORTHO05D009108 2.3e-66 257.7 383 40.7
A02p02170 Brassica napus HOM05D007280 ORTHO05D009108 8.7e-66 255.8 384 41.1
Ah.13g070140 Amaranthus hybridus HOM05D007280 ORTHO05D009108 1.1e-65 255.4 371 39.4
BraA02t05191Z Brassica rapa HOM05D007280 ORTHO05D009108 1.9e-65 254.6 384 40.9
Gohir.A09G112200 Gossypium hirsutum HOM05D007280 ORTHO05D009108 9.6e-65 252.3 350 41.7
GSVIVG01010259001 Vitis vinifera HOM05D007280 ORTHO05D009108 6.2e-64 249.6 337 43.3
Zm00001eb072910 Zea mays HOM05D007280 ORTHO05D009108 8.1e-64 249.2 412 38.1
BcaNung04186 Brassica carinata HOM05D007280 ORTHO05D009108 2.6e-62 244.2 364 40.9
Manes.17G093400 Manihot esculenta HOM05D007280 ORTHO05D009108 9.9e-62 242.3 329 42.2
SalBow3G1417 Salvia bowleyana HOM05D007280 ORTHO05D009108 8.4e-61 239.2 393 38.4
ATR0705G126 Amborella trichopoda HOM05D007280 ORTHO05D009108 5.4e-60 236.5 365 38.1
Glyma.07G177100 Glycine max HOM05D007280 ORTHO05D009108 9.3e-60 235.7 297 44.1
Sed0008466 Sechium edule HOM05D007280 ORTHO05D009108 9.3e-60 235.7 326 43.3
QL03p041451 Quercus lobata HOM05D007280 ORTHO05D009108 3.5e-59 233.8 329 43.2
TAR622G0173 Trochodendron aralioides HOM05D007280 ORTHO05D009108 7.9e-59 232.6 328 42.1
ClCG01G006970 Citrullus lanatus HOM05D007280 ORTHO05D009108 1.0e-58 232.3 334 42.2
MELO3C027064.2 Cucumis melo HOM05D007280 ORTHO05D009108 1.8e-58 231.5 281 44.8
CsaV3_5G017390 Cucumis sativus L. HOM05D007280 ORTHO05D009108 1.1e-57 228.8 330 41.8
Migut.N02514 Erythranthe guttata HOM05D007280 ORTHO05D009108 4.8e-56 223.4 339 38.6
AUR62019383 Chenopodium quinoa HOM05D007280 ORTHO05D009108 1.3e-53 215.3 343 39.1
AUR62006107 Chenopodium quinoa HOM05D007280 ORTHO05D009108 3.2e-52 210.7 342 38.3
Nitab4.5_0003882g0050 Nicotiana tabacum HOM05D007280 ORTHO05D009108 1.8e-50 204.9 193 56.0
Dinv17118 Davidia involucrata HOM05D007280 ORTHO05D009108 5.1e-50 203.4 239 46.0
Ah.07g205740 Amaranthus hybridus HOM05D007280 ORTHO05D009108 1.1e-49 202.2 364 35.2
Nitab4.5_0000129g0410 Nicotiana tabacum HOM05D007280 ORTHO05D009108 3.3e-49 200.7 193 53.9
PSO063G1027 Papaver somniferum HOM05D007280 ORTHO05D009108 1.3e-48 198.7 325 37.5
Lsat_1_v5_gn_4_26101 Lactuca sativa HOM05D007280 ORTHO05D009108 2.1e-48 198.0 335 36.1
Oeu006355.1 Olea europaea HOM05D007280 ORTHO05D009108 3.1e-47 194.1 328 38.4
PSO782G1316 Papaver somniferum HOM05D007280 ORTHO05D009108 3.1e-47 194.1 326 37.1
MBI03_g37599_MAGBIO Magnolia biondii HOM05D007280 ORTHO05D009108 9.0e-47 192.6 381 34.1
CDE08G0845 Ceratophyllum demersum HOM05D007280 ORTHO05D009108 1.5e-46 191.8 361 34.9
CiPaw.05G161600 Carya illinoinensis HOM05D007280 ORTHO05D009108 2.2e-45 188.0 338 37.9
GSVIVG01032336001 Vitis vinifera HOM05D007280 ORTHO05D009108 3.0e-42 177.6 248 42.3
Aqoxy3G04194 Aquilegia oxysepala HOM05D007280 ORTHO05D009108 7.4e-41 172.9 237 43.5
RcHm_v2.0_Chr4g0445881 Rosa chinensis HOM05D007280 ORTHO05D009108 1.3e-40 172.2 424 31.4
Ciclev10006779m.g Citrus clementina HOM05D007280 ORTHO05D009108 5.3e-39 166.8 193 47.7
CARHR199670 Cardamine hirsuta HOM05D007280 ORTHO05D009108 1.7e-37 161.8 229 39.3
COL.COLO4_36459 Corchorus olitorius HOM05D007280 ORTHO05D009108 5.0e-37 160.2 329 33.1
CDE04G3512 Ceratophyllum demersum HOM05D007280 ORTHO05D009108 1.0e-34 152.5 357 33.9
QL11p025101 Quercus lobata HOM05D007280 ORTHO05D009108 1.0e-34 152.5 193 45.1
ECA234G4111 Erigeron canadensis HOM05D007280 ORTHO05D009108 2.2e-29 134.8 120 60.0
Sc14g0006690 Simmondsia chinensis HOM05D007280 ORTHO05D009108 1.1e-28 132.5 228 34.6
QL11p025168 Quercus lobata HOM05D007280 ORTHO05D009108 4.1e-23 114.0 155 40.0
Atru.chr11.1056 Acer truncatum HOM05D007280 ORTHO05D009108 6.7e-18 96.7 70 64.3
MBI03_g47433_MAGBIO Magnolia biondii HOM05D007280 ORTHO05D009108 2.3e-10 71.6 41 68.3
Prupe.1G285700 Prunus persica HOM05D005622 ORTHO05D002854 8.8e-10 69.7 256 25.8
SEGI_25718 Sequoiadendron giganteum HOM05D007280 ORTHO05D009108 2.2e-08 65.1 130 28.5
AL7G14330 Arabidopsis lyrata HOM05D000891 ORTHO05D000761 3.7e-08 64.3 256 23.0
CARHR245040 Cardamine hirsuta HOM05D000891 ORTHO05D000761 4.8e-08 63.9 251 24.7
AUR62039226 Chenopodium quinoa HOM05D000001 ORTHO05D000003 3.1e-07 61.2 180 25.0
BcaB04g17087 Brassica carinata HOM05D002453 ORTHO05D008746 4.1e-07 60.8 180 27.8
MSTRG.13447 Avicennia marina HOM05D005622 ORTHO05D002854 9.1e-07 59.7 297 23.6
AUR62020458 Chenopodium quinoa HOM05D000001 ORTHO05D009857 1.2e-06 59.3 231 22.1
Aqoxy7G02761 Aquilegia oxysepala HOM05D006842 ORTHO05D008908 2.7e-06 58.2 132 27.3
AUR62009781 Chenopodium quinoa HOM05D000001 ORTHO05D000003 2.7e-06 58.2 182 25.3
Cc11_g12130 Coffea canephora HOM05D005622 ORTHO05D002854 4.5e-06 57.4 269 22.7
AUR62015757 Chenopodium quinoa HOM05D000001 ORTHO05D009857 7.7e-06 56.6 134 26.9
Dinv24252 Davidia involucrata HOM05D006080 ORTHO05D007382 7.7e-06 56.6 139 26.6
Sp1g22250 Schrenkiella parvula HOM05D005622 ORTHO05D002854 7.7e-06 56.6 266 22.9


User provided reference genes

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