Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR044G2096 Punica granatum HOM05D000161 ORTHO05D009031 0.0e+00 1678.3 819 100.0
Eucgr.K03449 Eucalyptus grandis HOM05D000161 ORTHO05D009031 0.0e+00 1280.8 819 76.1
Dinv33015 Davidia involucrata HOM05D000161 ORTHO05D009031 0.0e+00 1276.9 768 79.3
GSVIVG01010978001 Vitis vinifera HOM05D000161 ORTHO05D009031 0.0e+00 1267.3 752 79.1
Cfa005996 Carpinus fangiana HOM05D000161 ORTHO05D009031 0.0e+00 1261.5 788 76.1
COL.COLO4_08004 Corchorus olitorius HOM05D000161 ORTHO05D009031 0.0e+00 1256.5 750 78.9
MD03G1280600 Malus domestica HOM05D000161 ORTHO05D009031 0.0e+00 1251.5 797 75.2
Cc01_g20450 Coffea canephora HOM05D000161 ORTHO05D009031 0.0e+00 1250.7 774 75.8
Atru.chr5.1245 Acer truncatum HOM05D000161 ORTHO05D009031 0.0e+00 1248.4 818 74.8
Prupe.8G255100 Prunus persica HOM05D000161 ORTHO05D009031 0.0e+00 1248.0 812 74.8
Gohir.A11G116600 Gossypium hirsutum HOM05D000161 ORTHO05D009031 0.0e+00 1247.3 823 73.9
TWI59G0096 Tripterygium wilfordii HOM05D000161 ORTHO05D009031 0.0e+00 1246.1 765 78.3
Thecc.01G293400 Theobroma cacao HOM05D000161 ORTHO05D009031 0.0e+00 1245.3 778 76.5
Gohir.D11G121700 Gossypium hirsutum HOM05D000161 ORTHO05D009031 0.0e+00 1245.0 821 73.4
Ciclev10018836m.g Citrus clementina HOM05D000161 ORTHO05D009031 0.0e+00 1244.6 817 75.4
Manes.05G066300 Manihot esculenta HOM05D000161 ORTHO05D009031 0.0e+00 1244.6 765 77.3
Gorai.007G130400 Gossypium raimondii HOM05D000161 ORTHO05D009031 0.0e+00 1242.6 821 73.3
CiPaw.07G102700 Carya illinoinensis HOM05D000161 ORTHO05D009031 0.0e+00 1239.9 821 73.1
Duzib138G1706 Durio zibethinus HOM05D000161 ORTHO05D009031 0.0e+00 1239.9 788 75.0
CANSAT25G3411 Cannabis sativa HOM05D000161 ORTHO05D009031 0.0e+00 1238.0 798 74.7
TAR362G0905 Trochodendron aralioides HOM05D000161 ORTHO05D009031 0.0e+00 1232.6 769 76.7
Actinidia00683 Actinidia chinensis HOM05D000161 ORTHO05D009031 0.0e+00 1229.2 761 77.0
CsaV3_7G028900 Cucumis sativus L. HOM05D000161 ORTHO05D009031 0.0e+00 1226.8 759 76.3
ClCG09G006240 Citrullus lanatus HOM05D000161 ORTHO05D009031 0.0e+00 1222.6 787 74.5
Potri.002G209900 Populus trichocarpa HOM05D000161 ORTHO05D009031 0.0e+00 1214.9 827 71.6
Medtr7g108310 Medicago truncatula HOM05D000161 ORTHO05D009031 0.0e+00 1214.1 769 75.3
Haze_04852 Corylus avellana HOM05D000161 ORTHO05D009031 0.0e+00 1213.7 781 74.9
RcHm_v2.0_Chr6g0293001 Rosa chinensis HOM05D000161 ORTHO05D009031 0.0e+00 1211.4 791 73.7
Lj2C1188T5 Lonicera japonica HOM05D000161 ORTHO05D009031 0.0e+00 1211.1 758 75.3
vmacro02493 Vaccinium macrocarpon HOM05D000161 ORTHO05D009031 0.0e+00 1210.7 809 73.3
Sed0007225 Sechium edule HOM05D000161 ORTHO05D009031 0.0e+00 1209.5 760 75.5
Oeu057577.1 Olea europaea HOM05D000161 ORTHO05D009031 0.0e+00 1207.6 752 76.3
Lalb_Chr18g0047291 Lupinus albus HOM05D000161 ORTHO05D009031 0.0e+00 1204.9 766 74.8
Nn3g21368 Nelumbo nucifera HOM05D000161 ORTHO05D009031 0.0e+00 1204.9 818 70.5
Phvul.001G204000 Phaseolus vulgaris HOM05D000161 ORTHO05D009031 0.0e+00 1204.9 765 74.8
CAN.G1777.2 Capsicum annuum HOM05D000161 ORTHO05D009031 0.0e+00 1203.0 774 74.0
PGSC0003DMG400011361 Solanum tuberosum HOM05D000161 ORTHO05D009031 0.0e+00 1202.6 752 75.4
SGA_v2.0_scaffold1G00398 Striga asiatica HOM05D000161 ORTHO05D009031 0.0e+00 1202.6 820 72.1
VMungo1383G3032 Vigna mungo HOM05D000161 ORTHO05D009031 0.0e+00 1201.4 755 75.2
Sc24g0003880 Simmondsia chinensis HOM05D000161 ORTHO05D009031 0.0e+00 1197.6 772 73.6
Glyma.03G210900 Glycine max HOM05D000161 ORTHO05D009031 0.0e+00 1197.2 813 71.6
Ca_09126_v3 Cicer arietinum L. HOM05D000161 ORTHO05D009031 0.0e+00 1196.8 791 72.7
FvH4_2g25030 Fragaria vesca HOM05D000161 ORTHO05D009031 0.0e+00 1196.8 794 73.0
MSTRG.18182 Avicennia marina HOM05D000161 ORTHO05D009031 0.0e+00 1195.3 811 71.9
Solyc09g074660.3 Solanum lycopersicum HOM05D000161 ORTHO05D009031 0.0e+00 1194.5 787 72.7
Sopen09g029540 Solanum pennellii HOM05D000161 ORTHO05D009031 0.0e+00 1193.7 742 75.6
Lj1g0007269 Lotus japonicus HOM05D000161 ORTHO05D009031 0.0e+00 1191.8 751 75.4
Sabra02G0150400 Salix brachista HOM05D000161 ORTHO05D009031 0.0e+00 1189.5 834 69.5
Aqoxy2G03055 Aquilegia oxysepala HOM05D000161 ORTHO05D009031 0.0e+00 1187.2 822 70.1
Migut.D00162 Erythranthe guttata HOM05D000161 ORTHO05D009031 0.0e+00 1186.8 787 73.2
Glyma.19G208100 Glycine max HOM05D000161 ORTHO05D009031 0.0e+00 1186.0 752 74.9
PSO170G2241 Papaver somniferum HOM05D000161 ORTHO05D009031 0.0e+00 1186.0 774 72.6
EL10Ac7g17434 Beta vulgaris HOM05D000161 ORTHO05D009031 0.0e+00 1184.5 780 72.2
BcaB01g01973 Brassica carinata HOM05D000161 ORTHO05D009031 0.0e+00 1182.5 805 71.2
TPR.G9287 Trifolium pratense HOM05D000161 ORTHO05D009031 0.0e+00 1182.5 748 74.5
BraA09t35896Z Brassica rapa HOM05D000161 ORTHO05D009031 0.0e+00 1182.2 802 71.6
SalBow3G3810 Salvia bowleyana HOM05D000161 ORTHO05D009031 0.0e+00 1181.8 768 74.0
C09p02590 Brassica napus HOM05D000161 ORTHO05D009031 0.0e+00 1181.4 812 71.6
BolC9t53189H Brassica oleracea HOM05D000161 ORTHO05D009031 0.0e+00 1181.4 789 72.5
Nitab4.5_0001102g0080 Nicotiana tabacum HOM05D000161 ORTHO05D009031 0.0e+00 1180.2 811 71.0
BcaC04g23994 Brassica carinata HOM05D000161 ORTHO05D009031 0.0e+00 1178.7 789 72.2
A09p02490 Brassica napus HOM05D000161 ORTHO05D009031 0.0e+00 1177.9 803 71.4
Psat3g023920 Pisum sativum HOM05D000161 ORTHO05D009031 0.0e+00 1176.8 777 72.3
AL6G49740 Arabidopsis lyrata HOM05D000161 ORTHO05D009031 0.0e+00 1176.4 771 72.6
Thhalv10028434m.g Eutrema salsugineum HOM05D000161 ORTHO05D009031 0.0e+00 1175.2 817 70.7
FAN24G1124 Fragaria x ananassa HOM05D000161 ORTHO05D009031 0.0e+00 1175.2 794 72.2
Nitab4.5_0005245g0010 Nicotiana tabacum HOM05D000161 ORTHO05D009031 0.0e+00 1174.5 809 70.6
PSO210G6500 Papaver somniferum HOM05D000161 ORTHO05D009031 0.0e+00 1173.3 804 69.9
Sp6g03230 Schrenkiella parvula HOM05D000161 ORTHO05D009031 0.0e+00 1171.8 821 69.9
Carub.0006s3386 Capsella rubella HOM05D000161 ORTHO05D009031 0.0e+00 1171.4 819 70.0
FAN27G3195 Fragaria x ananassa HOM05D000161 ORTHO05D009031 0.0e+00 1170.2 806 71.6
CARHR251630 Cardamine hirsuta HOM05D000161 ORTHO05D009031 0.0e+00 1165.6 821 69.8
ECA236G0218 Erigeron canadensis HOM05D000161 ORTHO05D009031 0.0e+00 1165.2 748 73.1
HanXRQChr11g0350111 Helianthus annuus HOM05D000161 ORTHO05D009031 0.0e+00 1138.6 797 69.0
Rhsim13G0015500 Rhododendron simsii HOM05D000161 ORTHO05D009031 0.0e+00 1138.3 802 69.3
Oeu034814.1 Olea europaea HOM05D000161 ORTHO05D009031 0.0e+00 1121.7 778 71.3
Lsat_1_v5_gn_8_54360 Lactuca sativa HOM05D000161 ORTHO05D009031 0.0e+00 1119.4 764 70.3
ATR0706G016 Amborella trichopoda HOM05D000161 ORTHO05D009031 0.0e+00 1118.2 788 69.0
unitig_747.g21791 Utricularia gibba HOM05D000161 ORTHO05D009031 0.0e+00 1117.8 868 64.4
QL12p024497 Quercus lobata HOM05D000161 ORTHO05D009031 0.0e+00 1117.4 691 77.1
MELO3C016048.2 Cucumis melo HOM05D000161 ORTHO05D009031 0.0e+00 1110.1 690 76.8
Aa31LG5G2700 Aethionema arabicum HOM05D000161 ORTHO05D009031 0.0e+00 1102.4 780 69.0
MBI19_g24003_MAGBIO Magnolia biondii HOM05D000161 ORTHO05D009031 0.0e+00 1098.6 778 68.9
Ah.08g212400 Amaranthus hybridus HOM05D000161 ORTHO05D009031 0.0e+00 1090.1 813 65.3
Peaxi162Scf00067g01926 Petunia axillaris HOM05D000161 ORTHO05D009031 0.0e+00 1088.2 697 73.7
arahy.Tifrunner.gnm1.ann1.4BF7AZ Arachis hypogaea HOM05D000161 ORTHO05D009031 0.0e+00 1082.0 702 73.2
Lj1A36T49 Lonicera japonica HOM05D000161 ORTHO05D009031 5.6e-312 1073.9 756 70.1
Cpa.g.sc441.2 Carica papaya HOM05D000161 ORTHO05D009031 1.8e-305 1052.4 665 75.2
DCAR_018348 Daucus carota HOM05D000161 ORTHO05D009031 5.0e-303 1044.3 744 68.8
AT4G03200 Arabidopsis thaliana HOM05D000161 ORTHO05D009031 7.2e-302 1040.4 687 71.8
AUR62034669 Chenopodium quinoa HOM05D000161 ORTHO05D009031 4.7e-301 1037.7 872 60.6
CSS0042056 Camellia sinensis var. sinensis HOM05D000161 ORTHO05D009031 1.8e-292 1009.2 648 74.7
Mapoly0086s0039 Marchantia polymorpha HOM05D000161 ORTHO05D009031 1.1e-284 983.4 781 58.8
Pp3c3_16890 Physcomitrium patens HOM05D000161 ORTHO05D009031 9.8e-283 976.9 747 61.3
AagrBONN_evm.TU.Sc2ySwM_362.238 Anthoceros agrestis HOM05D000161 ORTHO05D009031 6.0e-272 941.0 753 59.0
Zm00001eb141990 Zea mays HOM05D000161 ORTHO05D009031 2.2e-266 922.5 637 67.7
arahy.Tifrunner.gnm1.ann1.Z5FZN7 Arachis hypogaea HOM05D000161 ORTHO05D009031 8.4e-258 894.0 608 70.7
HPP92_011821 Vanilla planifolia HOM05D000161 ORTHO05D009031 2.0e-243 846.3 625 64.8
AUR62008570 Chenopodium quinoa HOM05D000161 ORTHO05D009031 4.9e-242 841.6 691 61.6
CBR_g39419 Chara braunii HOM05D000019 ORTHO05D000048 3.9e-231 805.4 684 55.8
CDE09G1084 Ceratophyllum demersum HOM05D000161 ORTHO05D009031 5.0e-218 761.9 525 69.1
Cre07.g331250 Chlamydomonas reinhardtii HOM05D000161 ORTHO05D009031 1.9e-172 610.5 801 43.1
Lj1A204T33 Lonicera japonica HOM05D000161 ORTHO05D009031 5.4e-148 529.3 605 50.1
SMO011G0044 Selaginella moellendorffii HOM05D000161 ORTHO05D009031 7.1e-148 528.9 351 67.8
SEGI_38220 Sequoiadendron giganteum HOM05D000161 ORTHO05D009031 4.5e-126 456.4 318 69.8
Os01g0935600 Oryza sativa ssp. japonica HOM05D000161 ORTHO05D009031 3.9e-98 363.6 268 65.3
arahy.Tifrunner.gnm1.ann1.S4ZP24 Arachis hypogaea HOM05D000161 ORTHO05D009031 6.1e-83 313.2 289 58.1
arahy.Tifrunner.gnm1.ann1.FVA5UA Arachis hypogaea HOM05D000161 ORTHO05D009031 1.0e-74 285.8 226 62.8
arahy.Tifrunner.gnm1.ann1.59Y12W Arachis hypogaea HOM05D000161 ORTHO05D007114 5.9e-70 270.0 254 56.7
EL10Ac6g14352 Beta vulgaris HOM05D000161 ORTHO05D009031 3.0e-53 214.5 148 66.9
SEGI_26615 Sequoiadendron giganteum HOM05D000161 ORTHO05D009031 1.4e-42 179.1 127 65.4
EL10Ac7g17602 Beta vulgaris HOM05D000161 ORTHO05D039009 5.8e-41 173.7 122 66.4
arahy.Tifrunner.gnm1.ann1.NYYR6I Arachis hypogaea HOM05D000161 ORTHO05D038839 9.9e-41 172.9 136 60.3
HPP92_011833 Vanilla planifolia HOM05D000161 ORTHO05D036718 2.4e-39 168.3 105 74.3
Lsat_1_v5_gn_2_56220 Lactuca sativa HOM05D000161 ORTHO05D229717 5.3e-26 124.0 94 60.6
SEGI_06948 Sequoiadendron giganteum HOM05D000161 ORTHO05D038839 3.8e-24 117.9 113 46.0
arahy.Tifrunner.gnm1.ann1.A1CTBX Arachis hypogaea HOM05D000161 ORTHO05D083724 6.4e-24 117.1 161 42.9
Lj1A206G50 Lonicera japonica HOM05D000161 ORTHO05D235408 8.1e-19 100.1 110 50.9
EL10Ac9g20878 Beta vulgaris HOM05D008595 ORTHO05D010945 7.1e-15 87.0 62 66.1
SEGI_02592 Sequoiadendron giganteum HOM05D000161 ORTHO05D039009 7.1e-15 87.0 56 71.4
arahy.Tifrunner.gnm1.ann1.0H5KQ4 Arachis hypogaea HOM05D000161 ORTHO05D009031 3.7e-11 74.7 43 74.4
Medtr3g438040 Medicago truncatula HOM05D000161 ORTHO05D036718 3.7e-11 74.7 51 70.6
A03p30570 Brassica napus HOM05D000161 ORTHO05D041164 2.2e-08 65.5 41 75.6
BraA03t12237Z Brassica rapa HOM05D000161 ORTHO05D041164 3.2e-07 61.6 70 50.0


User provided reference genes

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