Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR044G1997 Punica granatum HOM05D006185 ORTHO05D007572 1.3e-108 396.4 191 100.0
Eucgr.C03305 Eucalyptus grandis HOM05D006185 ORTHO05D007572 9.2e-83 310.5 191 74.9
Potri.006G140000 Populus trichocarpa HOM05D006185 ORTHO05D007572 8.1e-79 297.4 190 74.2
Prupe.7G195700 Prunus persica HOM05D006185 ORTHO05D007572 8.1e-79 297.4 189 72.0
Atru.chr7.1733 Acer truncatum HOM05D006185 ORTHO05D007572 1.1e-78 297.0 190 73.2
Gohir.A05G034500 Gossypium hirsutum HOM05D006185 ORTHO05D007572 2.4e-78 295.8 185 71.9
Sc06g0006920 Simmondsia chinensis HOM05D006185 ORTHO05D007572 2.4e-78 295.8 185 71.4
TWI63G0883 Tripterygium wilfordii HOM05D006185 ORTHO05D007572 4.0e-78 295.0 186 72.0
QL11p001224 Quercus lobata HOM05D006185 ORTHO05D007572 6.9e-78 294.3 188 71.3
ClCG03G014940 Citrullus lanatus HOM05D006185 ORTHO05D007572 1.5e-77 293.1 186 73.7
Gohir.D05G035900 Gossypium hirsutum HOM05D006185 ORTHO05D007572 2.0e-77 292.7 185 71.4
Gorai.009G036500 Gossypium raimondii HOM05D006185 ORTHO05D007572 2.0e-77 292.7 185 71.4
CiPaw.03G203800 Carya illinoinensis HOM05D006185 ORTHO05D007572 2.6e-77 292.4 187 71.1
Ciclev10009607m.g Citrus clementina HOM05D006185 ORTHO05D007572 5.8e-77 291.2 189 72.0
Cc06_g12450 Coffea canephora HOM05D006185 ORTHO05D007572 7.6e-77 290.8 186 73.7
Dinv25540 Davidia involucrata HOM05D006185 ORTHO05D007572 9.9e-77 290.4 190 72.1
MD02G1095400 Malus domestica HOM05D006185 ORTHO05D007572 2.2e-76 289.3 189 70.4
Cfa002967 Carpinus fangiana HOM05D006185 ORTHO05D007572 2.9e-76 288.9 185 70.3
ECA236G4868 Erigeron canadensis HOM05D006185 ORTHO05D007572 3.8e-76 288.5 187 70.1
Manes.03G041800 Manihot esculenta HOM05D006185 ORTHO05D007572 3.8e-76 288.5 190 71.1
COL.COLO4_18072 Corchorus olitorius HOM05D006185 ORTHO05D007572 4.9e-76 288.1 184 70.7
CsaV3_1G041210 Cucumis sativus L. HOM05D006185 ORTHO05D007572 4.9e-76 288.1 186 71.5
CANSAT56G1413 Cannabis sativa HOM05D006185 ORTHO05D007572 6.4e-76 287.7 190 67.9
Lsat_1_v5_gn_8_85701 Lactuca sativa HOM05D006185 ORTHO05D007572 1.4e-75 286.6 189 70.9
FAN26G0065 Fragaria x ananassa HOM05D006185 ORTHO05D007572 2.4e-75 285.8 188 69.1
FAN26G3397 Fragaria x ananassa HOM05D006185 ORTHO05D007572 2.4e-75 285.8 188 69.1
CANSAT56G0026 Cannabis sativa HOM05D006185 ORTHO05D007572 3.2e-75 285.4 190 67.9
Duzib150G0101 Durio zibethinus HOM05D006185 ORTHO05D007572 3.2e-75 285.4 185 69.7
Gorai.010G090200 Gossypium raimondii HOM05D006185 ORTHO05D007572 3.2e-75 285.4 185 69.7
CANSAT56G3530 Cannabis sativa HOM05D006185 ORTHO05D007572 4.2e-75 285.0 191 68.1
HanXRQChr04g0125931 Helianthus annuus HOM05D006185 ORTHO05D007572 4.2e-75 285.0 192 69.3
Nitab4.5_0000073g0300 Nicotiana tabacum HOM05D006185 ORTHO05D007572 4.2e-75 285.0 188 71.8
Haze_26036 Corylus avellana HOM05D006185 ORTHO05D007572 5.4e-75 284.6 185 69.2
Migut.L01579 Erythranthe guttata HOM05D006185 ORTHO05D007572 5.4e-75 284.6 189 68.8
CSS0016181 Camellia sinensis var. sinensis HOM05D006185 ORTHO05D007572 7.1e-75 284.3 187 72.2
CANSAT56G1917 Cannabis sativa HOM05D006185 ORTHO05D007572 9.3e-75 283.9 191 67.5
FvH4_1g09020 Fragaria vesca HOM05D006185 ORTHO05D007572 9.3e-75 283.9 188 68.6
FAN19G1369 Fragaria x ananassa HOM05D006185 ORTHO05D007572 9.3e-75 283.9 188 68.6
Peaxi162Scf00928g00132 Petunia axillaris HOM05D006185 ORTHO05D007572 1.2e-74 283.5 189 70.4
CAN.G1661.20 Capsicum annuum HOM05D006185 ORTHO05D007572 1.6e-74 283.1 190 68.4
FAN23G1580 Fragaria x ananassa HOM05D006185 ORTHO05D007572 1.6e-74 283.1 188 69.1
Nitab4.5_0004234g0030 Nicotiana tabacum HOM05D006185 ORTHO05D007572 1.6e-74 283.1 188 71.3
Oeu062247.1 Olea europaea HOM05D006185 ORTHO05D007572 1.6e-74 283.1 191 69.1
CSS0028340 Camellia sinensis var. sinensis HOM05D006185 ORTHO05D007572 2.1e-74 282.7 189 70.9
Cpa.g.sc28.15 Carica papaya HOM05D006185 ORTHO05D007572 2.7e-74 282.3 190 68.9
EL10Ac8g19027 Beta vulgaris HOM05D006185 ORTHO05D007572 3.5e-74 282.0 189 67.7
Ca_09309_v3 Cicer arietinum L. HOM05D006185 ORTHO05D007572 3.5e-74 282.0 191 65.4
vmacro17122 Vaccinium macrocarpon HOM05D006185 ORTHO05D007572 4.6e-74 281.6 192 67.2
Ah.09g229250 Amaranthus hybridus HOM05D006185 ORTHO05D007572 6.0e-74 281.2 185 68.6
Rhsim05G0005100 Rhododendron simsii HOM05D006185 ORTHO05D007572 7.8e-74 280.8 192 68.8
Hund26074 Selenicereus undatus HOM05D006185 ORTHO05D007572 7.8e-74 280.8 182 68.1
Duzib187G0940 Durio zibethinus HOM05D006185 ORTHO05D007572 1.3e-73 280.0 185 70.3
SGA_v2.0_scaffold296G47554 Striga asiatica HOM05D006185 ORTHO05D007572 1.3e-73 280.0 186 69.4
TAR624G1115 Trochodendron aralioides HOM05D006185 ORTHO05D007572 1.3e-73 280.0 190 69.5
RcHm_v2.0_Chr2g0095441 Rosa chinensis HOM05D006185 ORTHO05D007572 1.7e-73 279.6 186 69.4
Thecc.09G074200 Theobroma cacao HOM05D006185 ORTHO05D007572 3.0e-73 278.9 185 70.3
Psat7g057800 Pisum sativum HOM05D006185 ORTHO05D007572 5.1e-73 278.1 185 66.5
Sabra06G0109300 Salix brachista HOM05D006185 ORTHO05D007572 5.1e-73 278.1 217 63.6
Solyc12g009180.2 Solanum lycopersicum HOM05D006185 ORTHO05D007572 8.7e-73 277.3 183 71.6
Sopen12g004130 Solanum pennellii HOM05D006185 ORTHO05D007572 8.7e-73 277.3 183 71.6
PGSC0003DMG400002903 Solanum tuberosum HOM05D006185 ORTHO05D007572 1.1e-72 276.9 183 71.6
Lj7A688T82 Lonicera japonica HOM05D006185 ORTHO05D007572 1.5e-72 276.6 188 69.7
MELO3C015534.2 Cucumis melo HOM05D006185 ORTHO05D007572 1.9e-72 276.2 205 64.9
VMungo1215G2404 Vigna mungo HOM05D006185 ORTHO05D007572 1.9e-72 276.2 193 66.8
Phvul.003G129600 Phaseolus vulgaris HOM05D006185 ORTHO05D007572 2.5e-72 275.8 194 67.5
Carub.0001s1876 Capsella rubella HOM05D006185 ORTHO05D007572 4.3e-72 275.0 190 67.9
Thhalv10008865m.g Eutrema salsugineum HOM05D006185 ORTHO05D007572 7.3e-72 274.2 190 66.8
GSVIVG01015050001 Vitis vinifera HOM05D006185 ORTHO05D007572 7.3e-72 274.2 190 68.4
THA.LOC104799837 Tarenaya hassleriana HOM05D006185 ORTHO05D007572 9.6e-72 273.9 186 67.7
TPR.G12562 Trifolium pratense HOM05D006185 ORTHO05D007572 9.6e-72 273.9 191 64.4
Aa31LG7G3870 Aethionema arabicum HOM05D006185 ORTHO05D007572 1.6e-71 273.1 190 66.3
AL1G31710 Arabidopsis lyrata HOM05D006185 ORTHO05D007572 2.8e-71 272.3 190 66.3
HanXRQChr06g0168681 Helianthus annuus HOM05D006185 ORTHO05D007572 2.8e-71 272.3 183 66.7
SalBow5G0266 Salvia bowleyana HOM05D006185 ORTHO05D007572 2.8e-71 272.3 187 68.4
AT1G19130 Arabidopsis thaliana HOM05D006185 ORTHO05D007572 3.6e-71 271.9 190 66.8
Glyma.13G111600 Glycine max HOM05D006185 ORTHO05D007572 3.6e-71 271.9 191 66.0
Eucgr.C00790 Eucalyptus grandis HOM05D006185 ORTHO05D007572 6.2e-71 271.2 194 67.0
unitig_699.g19263 Utricularia gibba HOM05D000454 ORTHO05D007572 6.2e-71 271.2 183 66.7
Medtr4g125100 Medicago truncatula HOM05D006185 ORTHO05D007572 1.1e-70 270.4 192 63.5
Lj4g0025093 Lotus japonicus HOM05D006185 ORTHO05D007572 4.0e-70 268.5 192 64.6
Hund26091 Selenicereus undatus HOM05D006185 ORTHO05D007572 4.0e-70 268.5 186 65.6
Sc08g0009100 Simmondsia chinensis HOM05D006185 ORTHO05D007572 5.3e-70 268.1 181 68.0
A08p30000 Brassica napus HOM05D006185 ORTHO05D007572 2.6e-69 265.8 190 63.2
BraA08t34935Z Brassica rapa HOM05D006185 ORTHO05D007572 3.4e-69 265.4 190 63.7
Lalb_Chr07g0181271 Lupinus albus HOM05D006185 ORTHO05D007572 3.4e-69 265.4 191 63.9
BcaC07g38980 Brassica carinata HOM05D006185 ORTHO05D007572 7.6e-69 264.2 190 63.7
C08p19220 Brassica napus HOM05D006185 ORTHO05D007572 2.2e-68 262.7 190 63.2
BolC8t49541H Brassica oleracea HOM05D006185 ORTHO05D007572 2.2e-68 262.7 190 63.2
EL10Ac8g18996 Beta vulgaris HOM05D006185 ORTHO05D007572 3.8e-68 261.9 182 67.0
BcaB03g12935 Brassica carinata HOM05D006185 ORTHO05D007572 1.1e-67 260.4 191 63.4
AUR62028304 Chenopodium quinoa HOM05D006185 ORTHO05D007572 1.1e-67 260.4 181 65.2
Actinidia30236 Actinidia chinensis HOM05D006185 ORTHO05D007572 3.2e-67 258.8 231 54.5
Nn6g35681 Nelumbo nucifera HOM05D006185 ORTHO05D007572 1.6e-66 256.5 191 63.4
DCAR_010492 Daucus carota HOM05D006185 ORTHO05D007572 2.7e-66 255.8 183 64.5
AUR62025298 Chenopodium quinoa HOM05D006185 ORTHO05D007572 3.5e-66 255.4 181 64.6
ECA236G2592 Erigeron canadensis HOM05D006185 ORTHO05D007572 1.9e-64 249.6 185 63.8
Nn5g27974 Nelumbo nucifera HOM05D006185 ORTHO05D007572 4.3e-64 248.4 188 63.8
Lsat_1_v5_gn_8_85721 Lactuca sativa HOM05D006185 ORTHO05D007572 7.4e-64 247.7 184 62.5
MBI13_g00698_MAGBIO Magnolia biondii HOM05D006185 ORTHO05D007572 1.3e-63 246.9 192 64.1
HPP92_004362 Vanilla planifolia HOM05D006185 ORTHO05D007572 1.3e-63 246.9 187 63.1
Zm00001eb040490 Zea mays HOM05D006185 ORTHO05D007572 1.1e-62 243.8 184 64.1
AUR62028278 Chenopodium quinoa HOM05D006185 ORTHO05D007572 1.4e-62 243.4 185 62.2
Aqoxy7G04191 Aquilegia oxysepala HOM05D006185 ORTHO05D007572 5.3e-62 241.5 189 63.0
AUR62025276 Chenopodium quinoa HOM05D006185 ORTHO05D007572 6.9e-62 241.1 144 74.3
ATR0006G060 Amborella trichopoda HOM05D006185 ORTHO05D007572 9.0e-62 240.7 193 59.1
Os08g0455800 Oryza sativa ssp. japonica HOM05D006185 ORTHO05D007572 9.0e-62 240.7 184 62.0
Lalb_Chr12g0200241 Lupinus albus HOM05D006185 ORTHO05D007572 2.9e-60 235.7 188 59.6
SEGI_13235 Sequoiadendron giganteum HOM05D006185 ORTHO05D007572 9.3e-59 230.7 185 60.0
MBI19_g05291_MAGBIO Magnolia biondii HOM05D006185 ORTHO05D007572 2.1e-58 229.6 179 64.2
SMO340G0144 Selaginella moellendorffii HOM05D006185 ORTHO05D007572 1.0e-57 227.3 185 56.2
Sed0027040 Sechium edule HOM05D006185 ORTHO05D007572 5.1e-57 224.9 146 69.2
Mapoly0007s0060 Marchantia polymorpha HOM05D006185 ORTHO05D007572 8.7e-57 224.2 185 57.3
Gohir.A06G078100 Gossypium hirsutum HOM05D006185 ORTHO05D007572 1.5e-56 223.4 185 57.8
Pp3c9_22400 Physcomitrium patens HOM05D006185 ORTHO05D007572 1.3e-55 220.3 189 55.0
arahy.Tifrunner.gnm1.ann1.Y0H2IU Arachis hypogaea HOM05D006185 ORTHO05D007572 6.2e-55 218.0 186 54.3
arahy.Tifrunner.gnm1.ann1.85MSRM Arachis hypogaea HOM05D006185 ORTHO05D007572 5.3e-54 214.9 186 53.8
Os06g0198500 Oryza sativa ssp. japonica HOM05D006185 ORTHO05D007572 1.5e-53 213.4 184 54.9
MBI13_g47248_MAGBIO Magnolia biondii HOM05D006185 ORTHO05D007572 1.3e-52 210.3 192 56.2
Gohir.D06G077100 Gossypium hirsutum HOM05D006185 ORTHO05D007572 1.4e-51 206.8 131 69.5
Ah.14g084750 Amaranthus hybridus HOM05D006185 ORTHO05D007572 1.7e-31 140.2 109 59.6
MSTRG.26479 Avicennia marina HOM05D006185 ORTHO05D007572 2.2e-31 139.8 111 57.7
FAN28G1197 Fragaria x ananassa HOM05D006185 ORTHO05D007572 2.2e-31 139.8 88 70.5
CARHR019730 Cardamine hirsuta HOM05D006185 ORTHO05D007572 3.1e-30 136.0 82 74.4
MBI14_g46913_MAGBIO Magnolia biondii HOM05D006185 ORTHO05D007572 3.6e-26 122.5 101 60.4
Os06g0198600 Oryza sativa ssp. japonica HOM05D006185 ORTHO05D007572 7.7e-21 104.8 115 47.0
Eucgr.C00789 Eucalyptus grandis HOM05D006185 ORTHO05D007572 2.1e-18 96.7 95 52.6
PRCOL_00002298 Prasinoderma coloniale HOM05D006185 ORTHO05D007572 1.0e-09 67.8 183 27.9
BcaB02g10882 Brassica carinata HOM05D006185 ORTHO05D007572 2.6e-08 63.2 78 46.2


User provided reference genes

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