Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR044G1943 Punica granatum HOM05D005229 ORTHO05D006378 6.0e-118 427.6 221 100.0
Eucgr.K02362 Eucalyptus grandis HOM05D005229 ORTHO05D006378 3.4e-97 358.6 229 82.5
PGR083G1330 Punica granatum HOM05D005229 ORTHO05D006378 2.2e-96 355.9 220 83.2
Nn1g09761 Nelumbo nucifera HOM05D005229 ORTHO05D006378 2.9e-96 355.5 221 83.3
QL01p048658 Quercus lobata HOM05D005229 ORTHO05D006378 3.8e-96 355.1 220 82.7
Prupe.6G361000 Prunus persica HOM05D005229 ORTHO05D006378 1.2e-94 350.1 221 81.0
Cfa006268 Carpinus fangiana HOM05D005229 ORTHO05D006378 2.7e-94 349.0 221 81.4
Cpa.g.sc8.42 Carica papaya HOM05D005229 ORTHO05D006378 3.5e-94 348.6 220 81.4
Haze_04550 Corylus avellana HOM05D005229 ORTHO05D006378 6.0e-94 347.8 221 81.4
TAR365G0963 Trochodendron aralioides HOM05D005229 ORTHO05D006378 6.0e-94 347.8 221 81.0
FAN02G4095 Fragaria x ananassa HOM05D005229 ORTHO05D006378 7.9e-94 347.4 221 82.8
FAN05G0704 Fragaria x ananassa HOM05D005229 ORTHO05D006378 7.9e-94 347.4 221 82.8
ECA236G3288 Erigeron canadensis HOM05D005229 ORTHO05D006378 1.3e-93 346.7 219 81.3
SGA_v2.0_scaffold29G12061 Striga asiatica HOM05D005229 ORTHO05D006378 1.8e-93 346.3 220 81.4
DCAR_018610 Daucus carota HOM05D005229 ORTHO05D006378 2.3e-93 345.9 220 80.9
FvH4_6g00530 Fragaria vesca HOM05D005229 ORTHO05D006378 2.3e-93 345.9 221 82.4
FAN09G4314 Fragaria x ananassa HOM05D005229 ORTHO05D006378 2.3e-93 345.9 221 82.4
CiPaw.07G079800 Carya illinoinensis HOM05D005229 ORTHO05D006378 3.9e-93 345.1 222 81.1
Lj1g0022024 Lotus japonicus HOM05D005229 ORTHO05D006378 5.1e-93 344.7 222 81.5
TWI36G1337 Tripterygium wilfordii HOM05D005229 ORTHO05D006378 6.7e-93 344.4 223 80.7
FAN14G1738 Fragaria x ananassa HOM05D005229 ORTHO05D006378 8.7e-93 344.0 221 81.9
Ciclev10016637m.g Citrus clementina HOM05D005229 ORTHO05D006378 1.1e-92 343.6 220 80.9
Oeu025298.1 Olea europaea HOM05D005229 ORTHO05D006378 1.1e-92 343.6 219 80.4
Glyma.18G241700 Glycine max HOM05D005229 ORTHO05D006378 1.5e-92 343.2 222 81.1
RcHm_v2.0_Chr3g0447921 Rosa chinensis HOM05D005229 ORTHO05D006378 1.9e-92 342.8 221 81.0
Glyma.09G250800 Glycine max HOM05D005229 ORTHO05D006378 3.3e-92 342.0 222 81.1
DCAR_012704 Daucus carota HOM05D005229 ORTHO05D006378 4.3e-92 341.7 220 79.5
Manes.12G055600 Manihot esculenta HOM05D005229 ORTHO05D006378 4.3e-92 341.7 218 81.2
Oeu013526.1 Olea europaea HOM05D005229 ORTHO05D006378 4.3e-92 341.7 219 79.5
Potri.002G239700 Populus trichocarpa HOM05D005229 ORTHO05D006378 4.3e-92 341.7 219 80.8
Potri.014G175600 Populus trichocarpa HOM05D005229 ORTHO05D006378 4.3e-92 341.7 218 80.7
THA.LOC104808816 Tarenaya hassleriana HOM05D005229 ORTHO05D006378 4.3e-92 341.7 220 79.1
TWI18G1321 Tripterygium wilfordii HOM05D005229 ORTHO05D006378 4.3e-92 341.7 221 79.6
COL.COLO4_07353 Corchorus olitorius HOM05D005229 ORTHO05D006378 5.7e-92 341.3 221 80.1
HanXRQChr12g0363961 Helianthus annuus HOM05D005229 ORTHO05D006378 5.7e-92 341.3 219 80.8
AUR62006659 Chenopodium quinoa HOM05D005229 ORTHO05D006378 1.3e-91 340.1 221 80.1
SalBow3G3798 Salvia bowleyana HOM05D005229 ORTHO05D006378 1.3e-91 340.1 221 80.5
C08p09050 Brassica napus HOM05D005229 ORTHO05D006378 1.6e-91 339.7 218 78.9
AUR62000314 Chenopodium quinoa HOM05D005229 ORTHO05D006378 1.6e-91 339.7 221 80.1
BcaC07g37428 Brassica carinata HOM05D005229 ORTHO05D006378 2.1e-91 339.3 218 78.4
Lalb_Chr19g0127611 Lupinus albus HOM05D005229 ORTHO05D006378 2.1e-91 339.3 222 79.7
BcaC02g09463 Brassica carinata HOM05D005229 ORTHO05D006378 2.8e-91 339.0 220 78.2
C04p43050 Brassica napus HOM05D005229 ORTHO05D006378 2.8e-91 339.0 220 78.2
BolC4t25883H Brassica oleracea HOM05D005229 ORTHO05D006378 2.8e-91 339.0 220 78.2
Aa31LG9G5690 Aethionema arabicum HOM05D005229 ORTHO05D006378 4.8e-91 338.2 220 76.8
Sp7g09420 Schrenkiella parvula HOM05D005229 ORTHO05D006378 4.8e-91 338.2 220 78.2
BolC8t47751H Brassica oleracea HOM05D005229 ORTHO05D006378 6.3e-91 337.8 218 78.4
A08p07360 Brassica napus HOM05D005229 ORTHO05D006378 8.2e-91 337.4 218 78.4
BraA08t32752Z Brassica rapa HOM05D005229 ORTHO05D006378 8.2e-91 337.4 218 78.4
Psat3g138440 Pisum sativum HOM05D005229 ORTHO05D006378 8.2e-91 337.4 222 78.8
Thecc.05G199500 Theobroma cacao HOM05D005229 ORTHO05D006378 1.1e-90 337.0 221 79.2
A04p09140 Brassica napus HOM05D005229 ORTHO05D006378 1.4e-90 336.7 220 77.7
Thhalv10026195m.g Eutrema salsugineum HOM05D005229 ORTHO05D006378 1.4e-90 336.7 220 77.7
MSTRG.17960 Avicennia marina HOM05D005229 ORTHO05D006378 1.8e-90 336.3 220 79.5
BcaB04g17739 Brassica carinata HOM05D005229 ORTHO05D006378 1.8e-90 336.3 219 77.6
Gohir.A07G089500 Gossypium hirsutum HOM05D005229 ORTHO05D006378 1.8e-90 336.3 222 78.4
Medtr7g079900 Medicago truncatula HOM05D005229 ORTHO05D006378 1.8e-90 336.3 222 77.9
Lsat_1_v5_gn_8_98481 Lactuca sativa HOM05D005229 ORTHO05D006378 2.4e-90 335.9 219 78.1
MD12G1260300 Malus domestica HOM05D005229 ORTHO05D006378 2.4e-90 335.9 221 77.4
arahy.Tifrunner.gnm1.ann1.MF538D Arachis hypogaea HOM05D005229 ORTHO05D006378 3.1e-90 335.5 222 78.8
Phvul.008G054400 Phaseolus vulgaris HOM05D005229 ORTHO05D006378 3.1e-90 335.5 222 78.4
Rhsim01G0247800 Rhododendron simsii HOM05D005229 ORTHO05D006378 3.1e-90 335.5 222 79.3
MD04G1244400 Malus domestica HOM05D005229 ORTHO05D006378 4.1e-90 335.1 221 77.4
Sabra14G0134400 Salix brachista HOM05D005229 ORTHO05D006378 4.1e-90 335.1 218 79.8
Thecc.01G207800 Theobroma cacao HOM05D005229 ORTHO05D006378 4.1e-90 335.1 220 77.7
Atru.chr6.3527 Acer truncatum HOM05D005229 ORTHO05D006378 5.3e-90 334.7 221 78.7
HanXRQChr08g0231801 Helianthus annuus HOM05D005229 ORTHO05D006378 5.3e-90 334.7 216 81.5
Peaxi162Scf00841g00210 Petunia axillaris HOM05D005229 ORTHO05D006378 5.3e-90 334.7 220 77.3
CAN.G874.38 Capsicum annuum HOM05D005229 ORTHO05D006378 6.9e-90 334.3 219 78.5
Solyc06g082940.3 Solanum lycopersicum HOM05D005229 ORTHO05D006378 6.9e-90 334.3 219 77.6
Solyc06g082950.4 Solanum lycopersicum HOM05D005229 ORTHO05D006378 6.9e-90 334.3 219 77.2
arahy.Tifrunner.gnm1.ann1.18YQBF Arachis hypogaea HOM05D005229 ORTHO05D006378 1.2e-89 333.6 222 78.4
BcaB03g16154 Brassica carinata HOM05D005229 ORTHO05D006378 1.2e-89 333.6 220 77.7
Ca_07979_v3 Cicer arietinum L. HOM05D005229 ORTHO05D006378 1.2e-89 333.6 222 78.4
Sopen06g034340 Solanum pennellii HOM05D005229 ORTHO05D006378 1.2e-89 333.6 219 77.6
AL9U11740 Arabidopsis lyrata HOM05D005229 ORTHO05D006378 1.5e-89 333.2 219 77.2
PGSC0003DMG400027672 Solanum tuberosum HOM05D005229 ORTHO05D006378 1.5e-89 333.2 219 77.6
VMungo1383G0609 Vigna mungo HOM05D005229 ORTHO05D006378 1.5e-89 333.2 221 78.3
vmacro14690 Vaccinium macrocarpon HOM05D005229 ORTHO05D006378 2.0e-89 332.8 221 78.7
AT4G12800 Arabidopsis thaliana HOM05D005229 ORTHO05D006378 2.6e-89 332.4 220 76.4
CAN.G874.39 Capsicum annuum HOM05D005229 ORTHO05D006378 2.6e-89 332.4 219 78.1
Gohir.D07G168100 Gossypium hirsutum HOM05D005229 ORTHO05D006378 3.4e-89 332.0 219 78.5
GSVIVG01019114001 Vitis vinifera HOM05D005229 ORTHO05D006378 3.4e-89 332.0 222 78.4
CARHR218150 Cardamine hirsuta HOM05D005229 ORTHO05D006378 4.5e-89 331.6 219 76.3
Gohir.A07G160500 Gossypium hirsutum HOM05D005229 ORTHO05D006378 4.5e-89 331.6 219 78.5
Aqoxy2G04070 Aquilegia oxysepala HOM05D005229 ORTHO05D006378 5.9e-89 331.3 220 78.2
MSTRG.12743 Avicennia marina HOM05D005229 ORTHO05D006378 5.9e-89 331.3 219 79.0
ClCG11G010740 Citrullus lanatus HOM05D005229 ORTHO05D006378 5.9e-89 331.3 219 78.5
MELO3C008731.2 Cucumis melo HOM05D005229 ORTHO05D006378 5.9e-89 331.3 219 78.5
ECA247G0242 Erigeron canadensis HOM05D005229 ORTHO05D006378 5.9e-89 331.3 217 81.1
PGSC0003DMG400027671 Solanum tuberosum HOM05D005229 ORTHO05D006378 5.9e-89 331.3 219 77.2
unitig_60.g25573 Utricularia gibba HOM05D005229 ORTHO05D006378 5.9e-89 331.3 219 78.1
Carub.0007s3001 Capsella rubella HOM05D005229 ORTHO05D006378 7.6e-89 330.9 220 75.9
Sopen06g034330 Solanum pennellii HOM05D005229 ORTHO05D006378 7.6e-89 330.9 219 76.7
Sabra02G0182500 Salix brachista HOM05D005229 ORTHO05D006378 1.0e-88 330.5 217 79.3
CsaV3_2G009680 Cucumis sativus L. HOM05D005229 ORTHO05D006378 2.2e-88 329.3 219 77.6
Lalb_Chr01g0020361 Lupinus albus HOM05D005229 ORTHO05D006378 2.2e-88 329.3 222 77.9
MBI07_g06134_MAGBIO Magnolia biondii HOM05D005229 ORTHO05D006378 2.2e-88 329.3 220 76.4
Actinidia34531 Actinidia chinensis HOM05D005229 ORTHO05D006378 3.8e-88 328.6 222 80.6
Lsat_1_v5_gn_9_16861 Lactuca sativa HOM05D005229 ORTHO05D006378 5.0e-88 328.2 216 78.7
EL10Ac4g09972 Beta vulgaris HOM05D005229 ORTHO05D006378 6.5e-88 327.8 221 77.8
Migut.D00776 Erythranthe guttata HOM05D005229 ORTHO05D006378 6.5e-88 327.8 219 76.3
Gorai.001G101200 Gossypium raimondii HOM05D005229 ORTHO05D006378 6.5e-88 327.8 219 76.7
Sed0023204 Sechium edule HOM05D005229 ORTHO05D006378 6.5e-88 327.8 219 77.6
Gohir.D07G094300 Gossypium hirsutum HOM05D005229 ORTHO05D006378 8.4e-88 327.4 219 77.6
Gorai.N002100 Gossypium raimondii HOM05D005229 ORTHO05D006378 8.4e-88 327.4 219 79.0
unitig_0.g420 Utricularia gibba HOM05D005229 ORTHO05D006378 1.1e-87 327.0 219 78.1
CANSAT54G2118 Cannabis sativa HOM05D005229 ORTHO05D006378 1.9e-87 326.2 220 78.6
Lj2P1112T20 Lonicera japonica HOM05D005229 ORTHO05D006378 4.2e-87 325.1 208 81.2
TPR.G30351 Trifolium pratense HOM05D005229 ORTHO05D006378 5.5e-87 324.7 223 78.0
Sed0003052 Sechium edule HOM05D005229 ORTHO05D006378 9.3e-87 323.9 219 76.7
PSO017G0175 Papaver somniferum HOM05D005229 ORTHO05D006378 1.6e-86 323.2 221 76.5
PSO675G2116 Papaver somniferum HOM05D005229 ORTHO05D006378 1.6e-86 323.2 221 76.5
CDE06G2797 Ceratophyllum demersum HOM05D005229 ORTHO05D006378 2.1e-86 322.8 220 75.0
Cc01_g15890 Coffea canephora HOM05D005229 ORTHO05D006378 2.1e-86 322.8 220 74.5
Hund07343 Selenicereus undatus HOM05D005229 ORTHO05D006378 2.3e-85 319.3 222 75.2
Duzib138G0242 Durio zibethinus HOM05D005229 ORTHO05D006378 5.1e-85 318.2 221 75.6
Ah.04g158950 Amaranthus hybridus HOM05D005229 ORTHO05D006378 1.3e-83 313.5 220 74.1
CSS0044510 Camellia sinensis var. sinensis HOM05D005229 ORTHO05D006378 2.2e-83 312.8 226 73.5
SEGI_02964 Sequoiadendron giganteum HOM05D005229 ORTHO05D006378 7.9e-78 294.3 175 81.1
Os12g0420400 Oryza sativa ssp. japonica HOM05D005229 ORTHO05D006378 1.4e-77 293.5 219 72.1
ATR1147G045 Amborella trichopoda HOM05D005229 ORTHO05D006378 3.9e-77 292.0 227 70.9
Lj1P104T52 Lonicera japonica HOM05D005229 ORTHO05D006378 1.7e-75 286.6 165 85.5
Zm00001eb123000 Zea mays HOM05D005229 ORTHO05D006378 3.1e-74 282.3 219 69.9
CDE06G0966 Ceratophyllum demersum HOM05D005229 ORTHO05D006378 1.9e-71 273.1 193 72.5
Mapoly0102s0025 Marchantia polymorpha HOM05D005229 ORTHO05D006378 1.4e-69 266.9 192 70.8
Zm00001eb336580 Zea mays HOM05D005229 ORTHO05D006378 1.8e-69 266.5 163 79.8
Nitab4.5_0001348g0130 Nicotiana tabacum HOM05D005229 ORTHO05D006378 1.3e-67 260.4 165 79.4
Pp3c16_5670 Physcomitrium patens HOM05D005229 ORTHO05D006378 6.3e-67 258.1 170 74.1
AagrBONN_evm.TU.Sc2ySwM_362.2854 Anthoceros agrestis HOM05D005229 ORTHO05D006378 1.4e-66 256.9 171 73.1
Pp3c27_2310 Physcomitrium patens HOM05D005229 ORTHO05D006378 4.1e-66 255.4 189 67.7
Pp3c5_4200 Physcomitrium patens HOM05D005229 ORTHO05D006378 4.1e-66 255.4 218 62.8
Dinv28794 Davidia involucrata HOM05D005229 ORTHO05D006378 1.6e-62 243.4 220 62.7
CBR_g27900 Chara braunii HOM05D005229 ORTHO05D006378 6.8e-53 211.5 223 53.8
Nitab4.5_0001348g0080 Nicotiana tabacum HOM05D005229 ORTHO05D006378 1.2e-52 210.7 220 55.5
Peaxi162Scf01242g00025 Petunia axillaris HOM05D005229 ORTHO05D006378 2.4e-50 203.0 219 53.4
Hma1.2p1_0171F.1_g075540 Hydrangea macrophylla HOM05D005229 ORTHO05D006378 8.3e-43 177.9 129 71.3
MCO13G042 Micromonas commoda HOM05D005229 ORTHO05D006378 9.2e-42 174.5 205 49.8
Cre12.g486300 Chlamydomonas reinhardtii HOM05D005229 ORTHO05D006378 2.0e-41 173.3 170 54.1
Actinidia23801 Actinidia chinensis HOM05D005229 ORTHO05D006378 1.1e-39 167.5 138 74.6
PRCOL_00002830 Prasinoderma coloniale HOM05D005229 ORTHO05D006378 1.6e-38 163.7 150 54.7
MD04G1204600 Malus domestica HOM05D000208 ORTHO05D000130 1.8e-29 133.7 107 68.2
Actinidia04690 Actinidia chinensis HOM05D004953 ORTHO05D006193 2.1e-14 83.6 59 71.2
Actinidia12853 Actinidia chinensis HOM05D001772 ORTHO05D000476 2.1e-14 83.6 59 71.2
Actinidia23346 Actinidia chinensis HOM05D005229 ORTHO05D057974 6.6e-08 62.0 60 51.7


User provided reference genes

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