Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR044G1874 Punica granatum HOM05D004826 ORTHO05D006367 3.6e-233 811.2 414 100.0
Eucgr.K03351 Eucalyptus grandis HOM05D004826 ORTHO05D006367 7.7e-143 511.1 425 64.9
GSVIVG01001175001 Vitis vinifera HOM05D004826 ORTHO05D006367 1.3e-142 510.4 433 61.2
Thecc.01G275300 Theobroma cacao HOM05D004826 ORTHO05D006367 2.2e-142 509.6 430 62.3
Dinv34775 Davidia involucrata HOM05D004826 ORTHO05D006367 1.1e-141 507.3 433 62.4
Manes.05G079700 Manihot esculenta HOM05D004826 ORTHO05D006367 3.2e-141 505.8 433 62.6
Hma1.2p1_0822F.1_g224300 Hydrangea macrophylla HOM05D004826 ORTHO05D006367 1.6e-140 503.4 424 62.5
Duzib138G1281 Durio zibethinus HOM05D004826 ORTHO05D006367 4.7e-140 501.9 432 61.3
Potri.005G211600 Populus trichocarpa HOM05D004826 ORTHO05D006367 8.0e-140 501.1 428 60.7
COL.COLO4_09064 Corchorus olitorius HOM05D004826 ORTHO05D003095 1.4e-139 500.4 432 61.1
Haze_04685 Corylus avellana HOM05D004826 ORTHO05D006367 1.4e-139 500.4 433 62.6
Actinidia24908 Actinidia chinensis HOM05D004826 ORTHO05D006367 3.0e-139 499.2 433 60.5
MD11G1282600 Malus domestica HOM05D004826 ORTHO05D006367 5.2e-139 498.4 433 62.1
FvH4_2g23260 Fragaria vesca HOM05D004826 ORTHO05D006367 8.8e-139 497.7 426 63.4
FAN15G0865 Fragaria x ananassa HOM05D004826 ORTHO05D006367 1.5e-138 496.9 428 63.1
FAN27G1728 Fragaria x ananassa HOM05D004826 ORTHO05D006367 3.4e-138 495.7 428 62.6
TWI75G1621 Tripterygium wilfordii HOM05D004826 ORTHO05D006367 3.4e-138 495.7 429 61.3
Gorai.008G003800 Gossypium raimondii HOM05D004826 ORTHO05D006367 5.7e-138 495.0 431 61.0
FAN20G2615 Fragaria x ananassa HOM05D004826 ORTHO05D006367 7.5e-138 494.6 428 62.6
Gohir.A12G004300 Gossypium hirsutum HOM05D004826 ORTHO05D006367 7.5e-138 494.6 431 60.6
TAR633G1509 Trochodendron aralioides HOM05D004826 ORTHO05D006367 1.3e-137 493.8 435 60.7
CSS0031998 Camellia sinensis var. sinensis HOM05D004826 ORTHO05D006367 1.7e-137 493.4 433 59.8
CSS0030159 Camellia sinensis var. sinensis HOM05D004826 ORTHO05D006367 3.7e-137 492.3 433 59.6
Ciclev10020269m.g Citrus clementina HOM05D004826 ORTHO05D006367 8.3e-137 491.1 426 60.8
FAN24G0969 Fragaria x ananassa HOM05D004826 ORTHO05D006367 1.1e-136 490.7 426 62.9
CANSAT25G1434 Cannabis sativa HOM05D004826 ORTHO05D006367 1.4e-136 490.3 432 61.3
Prupe.8G238200 Prunus persica HOM05D004826 ORTHO05D006367 1.8e-136 490.0 428 61.4
RcHm_v2.0_Chr6g0290561 Rosa chinensis HOM05D004826 ORTHO05D006367 1.8e-136 490.0 427 61.8
Gohir.D12G004000 Gossypium hirsutum HOM05D004826 ORTHO05D006367 5.4e-136 488.4 431 60.3
THA.LOC104801247 Tarenaya hassleriana HOM05D004826 ORTHO05D006367 5.0e-134 481.9 429 61.3
QL12p021024 Quercus lobata HOM05D004826 ORTHO05D006367 7.3e-133 478.0 505 52.7
Cpa.g.sc2545.1 Carica papaya HOM05D004826 ORTHO05D006367 3.6e-132 475.7 468 56.0
arahy.Tifrunner.gnm1.ann1.HM2HLZ Arachis hypogaea HOM05D004826 ORTHO05D006367 1.2e-130 470.7 422 60.4
Thhalv10007706m.g Eutrema salsugineum HOM05D004826 ORTHO05D006367 3.4e-130 469.2 425 59.8
Rhsim01G0273300 Rhododendron simsii HOM05D004826 ORTHO05D006367 4.4e-130 468.8 436 57.3
Lj1A48T56 Lonicera japonica HOM05D004826 ORTHO05D006367 5.7e-130 468.4 439 58.8
AT1G03110 Arabidopsis thaliana HOM05D004826 ORTHO05D006367 3.7e-129 465.7 417 59.2
vmacro14910 Vaccinium macrocarpon HOM05D004826 ORTHO05D006367 6.4e-129 464.9 455 55.2
Carub.0001s0225 Capsella rubella HOM05D004826 ORTHO05D006367 8.3e-129 464.5 424 59.4
Psat3g063080 Pisum sativum HOM05D004826 ORTHO05D006367 1.1e-128 464.2 428 58.4
arahy.Tifrunner.gnm1.ann1.ZSCD81 Arachis hypogaea HOM05D004826 ORTHO05D006367 5.4e-128 461.8 439 58.3
DCAR_002720 Daucus carota HOM05D004826 ORTHO05D006367 9.2e-128 461.1 417 58.3
VMungo1383G1287 Vigna mungo HOM05D004826 ORTHO05D006367 1.2e-127 460.7 420 58.3
PGSC0003DMG400005331 Solanum tuberosum HOM05D004826 ORTHO05D006367 1.6e-127 460.3 420 58.6
Glyma.03G155900 Glycine max HOM05D004826 ORTHO05D006367 2.0e-127 459.9 421 58.9
ECA236G2315 Erigeron canadensis HOM05D004826 ORTHO05D006367 4.6e-127 458.8 420 57.6
Sabra05G0161700 Salix brachista HOM05D004826 ORTHO05D006367 5.9e-127 458.4 451 54.5
AL1G12580 Arabidopsis lyrata HOM05D004826 ORTHO05D006367 7.8e-127 458.0 421 58.9
Glyma.19G158200 Glycine max HOM05D004826 ORTHO05D006367 1.0e-126 457.6 425 58.4
Aa31LG1G9410 Aethionema arabicum HOM05D004826 ORTHO05D006367 1.7e-126 456.8 442 56.6
CARHR002460 Cardamine hirsuta HOM05D004826 ORTHO05D006367 5.0e-126 455.3 418 59.3
PSO832G3843 Papaver somniferum HOM05D004826 ORTHO05D006367 6.6e-126 454.9 435 56.3
PSO210G5512 Papaver somniferum HOM05D004826 ORTHO05D006367 1.9e-125 453.4 434 56.2
Sp1g02120 Schrenkiella parvula HOM05D004826 ORTHO05D006367 2.5e-125 453.0 422 58.8
Phvul.001G153300 Phaseolus vulgaris HOM05D004826 ORTHO05D006367 3.3e-125 452.6 420 57.6
EL10Ac5g10541 Beta vulgaris HOM05D004826 ORTHO05D006367 2.8e-124 449.5 447 54.6
Ca_08614_v3 Cicer arietinum L. HOM05D004826 ORTHO05D006367 2.8e-124 449.5 422 57.1
MD03G1261900 Malus domestica HOM05D004826 ORTHO05D006367 3.6e-124 449.1 431 58.2
CsaV3_7G027950 Cucumis sativus L. HOM05D004826 ORTHO05D006367 6.2e-124 448.4 431 55.5
TPR.G24327 Trifolium pratense HOM05D004826 ORTHO05D006367 8.0e-124 448.0 424 56.8
Lj1g0007005 Lotus japonicus HOM05D004826 ORTHO05D006367 1.4e-123 447.2 430 56.7
Sopen06g003480 Solanum pennellii HOM05D004826 ORTHO05D006367 1.4e-123 447.2 420 57.9
Cc01_g19270 Coffea canephora HOM05D004826 ORTHO05D006367 1.8e-123 446.8 440 54.5
Solyc06g008700.3 Solanum lycopersicum HOM05D004826 ORTHO05D006367 3.1e-123 446.0 420 57.4
MELO3C015814.2 Cucumis melo HOM05D004826 ORTHO05D006367 2.0e-122 443.4 431 55.5
A08p37480 Brassica napus HOM05D004826 ORTHO05D006367 2.6e-122 443.0 429 56.4
BcaC07g42266 Brassica carinata HOM05D004826 ORTHO05D002453 4.4e-122 442.2 422 57.1
Oeu025741.1 Olea europaea HOM05D004826 ORTHO05D006367 5.8e-122 441.8 433 56.8
Lalb_Chr01g0020091 Lupinus albus HOM05D004826 ORTHO05D006367 1.7e-121 440.3 430 56.3
Medtr7g095190 Medicago truncatula HOM05D004826 ORTHO05D006367 6.4e-121 438.3 423 57.2
AUR62028599 Chenopodium quinoa HOM05D004826 ORTHO05D006367 1.4e-120 437.2 453 54.7
AUR62032326 Chenopodium quinoa HOM05D004826 ORTHO05D006367 1.9e-120 436.8 435 55.9
Aqoxy5G00445 Aquilegia oxysepala HOM05D004826 ORTHO05D006367 3.2e-120 436.0 432 54.9
HanXRQChr04g0118961 Helianthus annuus HOM05D004826 ORTHO05D006367 5.4e-120 435.3 436 55.0
BraA08t35646Z Brassica rapa HOM05D004826 ORTHO05D006367 2.7e-119 433.0 439 54.9
BraA09t42171Z Brassica rapa HOM05D004826 ORTHO05D002453 4.6e-119 432.2 420 56.7
BolC8t46840H Brassica oleracea HOM05D004826 ORTHO05D006367 1.3e-118 430.6 439 54.9
C08p00410 Brassica napus HOM05D004826 ORTHO05D006367 5.0e-118 428.7 432 56.2
A09p68350 Brassica napus HOM05D004826 ORTHO05D002453 8.6e-118 427.9 420 56.4
ClCG09G007220 Citrullus lanatus HOM05D004826 ORTHO05D006367 3.3e-117 426.0 471 51.2
Peaxi162Scf00572g00217 Petunia axillaris HOM05D004826 ORTHO05D006367 2.8e-116 422.9 424 54.7
Sc17g0001330 Simmondsia chinensis HOM05D004826 ORTHO05D006367 6.2e-116 421.8 419 53.9
MSTRG.18248 Avicennia marina HOM05D004826 ORTHO05D006367 1.8e-115 420.2 422 55.2
SalBow4G1440 Salvia bowleyana HOM05D004826 ORTHO05D006367 1.2e-114 417.5 423 53.9
Migut.D00320 Erythranthe guttata HOM05D004826 ORTHO05D006367 1.5e-114 417.2 436 54.1
Ah.02g110880 Amaranthus hybridus HOM05D004826 ORTHO05D006367 7.5e-114 414.8 410 54.6
Lsat_1_v5_gn_8_56761 Lactuca sativa HOM05D004826 ORTHO05D006367 9.8e-114 414.5 388 55.2
BolC8t52808H Brassica oleracea HOM05D004826 ORTHO05D002453 1.3e-113 414.1 422 55.0
C05p01720 Brassica napus HOM05D004826 ORTHO05D006367 1.1e-112 411.0 430 54.4
C08p52920 Brassica napus HOM05D004826 ORTHO05D002453 4.6e-111 405.6 422 54.0
CDE06G0967 Ceratophyllum demersum HOM05D004826 ORTHO05D006367 4.3e-109 399.1 421 50.6
CiPaw.07G089800 Carya illinoinensis HOM05D004826 ORTHO05D006367 2.6e-106 389.8 334 62.3
Ca_08622_v3 Cicer arietinum L. HOM05D004826 ORTHO05D006367 2.1e-103 380.2 396 52.8
Os03g0746800 Oryza sativa ssp. japonica HOM05D004826 ORTHO05D006367 1.1e-101 374.4 436 48.6
HPP92_006117 Vanilla planifolia HOM05D004826 ORTHO05D006367 8.4e-97 358.2 418 47.6
Nn1g02359 Nelumbo nucifera HOM05D004826 ORTHO05D006367 1.1e-96 357.8 299 60.9
Atru.chr5.1473 Acer truncatum HOM05D004826 ORTHO05D006367 1.1e-88 331.3 233 69.5
Hma1.2p1_0822F.1_g224310 Hydrangea macrophylla HOM05D004826 ORTHO05D006367 2.7e-87 326.6 300 59.7
Zm00001eb215000 Zea mays HOM05D004826 ORTHO05D006367 6.9e-83 312.0 436 43.3
A10p01740 Brassica napus HOM05D004826 ORTHO05D006367 9.0e-83 311.6 431 46.4
MBI05_g20783_MAGBIO Magnolia biondii HOM05D004826 ORTHO05D006367 2.0e-82 310.5 412 46.6
Sed0001689 Sechium edule HOM05D004826 ORTHO05D006367 2.6e-82 310.1 347 51.3
SEGI_35891 Sequoiadendron giganteum HOM05D004826 ORTHO05D006367 2.4e-80 303.5 430 41.9
unitig_0.g133 Utricularia gibba HOM05D004826 ORTHO05D006367 3.5e-79 299.7 388 43.8
RcHm_v2.0_Chr6g0290571 Rosa chinensis HOM05D004826 ORTHO05D006367 1.0e-73 281.6 237 60.8
BolC1t00008H Brassica oleracea HOM05D004826 ORTHO05D006367 3.7e-68 263.1 374 44.1
C01p00020 Brassica napus HOM05D004826 ORTHO05D006367 6.3e-68 262.3 374 44.4
Pp3c3_10370 Physcomitrium patens HOM05D004826 ORTHO05D006367 5.3e-67 259.2 424 38.9
Nitab4.5_0005696g0030 Nicotiana tabacum HOM05D004826 ORTHO05D006367 1.5e-66 257.7 368 42.9
SMO358G0471 Selaginella moellendorffii HOM05D004826 ORTHO05D006367 1.0e-65 255.0 425 40.0
SHI16389 Sapria himalayana HOM05D000105 ORTHO05D000023 2.9e-65 253.4 190 64.7
Mapoly0048s0007 Marchantia polymorpha HOM05D004826 ORTHO05D006367 5.0e-65 252.7 440 36.4
BcaNung01310 Brassica carinata HOM05D004826 ORTHO05D006367 5.5e-64 249.2 374 43.0
BcaNung01308 Brassica carinata HOM05D004826 ORTHO05D006367 1.2e-58 231.5 383 39.9
BraA10t42449Z Brassica rapa HOM05D004826 ORTHO05D006367 2.6e-53 213.8 290 46.9
CSS0007905 Camellia sinensis var. sinensis HOM05D004826 ORTHO05D006367 7.4e-53 212.2 164 61.0
Actinidia21127 Actinidia chinensis HOM05D004826 ORTHO05D006367 2.7e-47 193.7 448 33.5
CSS0022346 Camellia sinensis var. sinensis HOM05D004826 ORTHO05D006367 2.7e-47 193.7 159 59.7
BolC1t00011H Brassica oleracea HOM05D004826 ORTHO05D006367 5.7e-45 186.0 221 48.0
CBR_g19915 Chara braunii HOM05D004826 ORTHO05D006367 6.3e-44 182.6 268 40.3
BolC5t28951H Brassica oleracea HOM05D004826 ORTHO05D006367 1.2e-39 168.3 262 44.7
SGA_v2.0_scaffold138G35320 Striga asiatica HOM05D004826 ORTHO05D006367 2.6e-37 160.6 409 31.1
AagrBONN_evm.TU.Sc2ySwM_228.3229 Anthoceros agrestis HOM05D011762 ORTHO05D014803 5.9e-34 149.4 340 34.1
CiPaw.07G089700 Carya illinoinensis HOM05D004826 ORTHO05D006367 4.2e-32 143.3 99 71.7
TWI12G0215 Tripterygium wilfordii HOM05D004826 ORTHO05D006367 4.7e-31 139.8 105 64.8
Hund02828 Selenicereus undatus HOM05D004826 ORTHO05D006367 8.0e-31 139.0 130 60.8
Hund27937 Selenicereus undatus HOM05D004826 ORTHO05D006367 8.0e-31 139.0 130 60.8
Lj1C48G4 Lonicera japonica HOM05D000001 ORTHO05D000003 7.5e-29 132.5 190 44.2
Hma1.2p1_0822F.1_g224290 Hydrangea macrophylla HOM05D004826 ORTHO05D006367 1.3e-28 131.7 94 68.1
arahy.Tifrunner.gnm1.ann1.QRYF2V Arachis hypogaea HOM05D004826 ORTHO05D006367 4.1e-27 126.7 286 37.4
Cre08.g374800 Chlamydomonas reinhardtii HOM05D004826 ORTHO05D006367 8.8e-22 109.0 226 27.9
arahy.Tifrunner.gnm1.ann1.XCP3P1 Arachis hypogaea HOM05D004826 ORTHO05D006367 2.6e-21 107.5 286 32.5
SGA_v2.0_scaffold1G00502 Striga asiatica HOM05D004826 ORTHO05D006367 4.4e-21 106.7 123 48.0
Nitab4.5_0025955g0010 Nicotiana tabacum HOM05D004826 ORTHO05D006367 1.7e-20 104.8 238 34.5
Gorai.005G155300 Gossypium raimondii HOM05D004826 ORTHO05D006367 3.7e-20 103.6 74 64.9
Gohir.D02G138850 Gossypium hirsutum HOM05D004826 ORTHO05D006367 6.3e-20 102.8 74 64.9
ATR0665G626 Amborella trichopoda HOM05D004826 ORTHO05D006367 8.3e-20 102.4 115 46.1
MCO04G388 Micromonas commoda HOM05D004826 ORTHO05D006367 3.1e-19 100.5 238 29.8
QL12p021035 Quercus lobata HOM05D004826 ORTHO05D006367 6.6e-17 92.8 208 38.0
arahy.Tifrunner.gnm1.ann1.DV54YZ Arachis hypogaea HOM05D004826 ORTHO05D006367 1.9e-16 91.3 83 65.1
SHI16388 Sapria himalayana HOM05D004826 ORTHO05D006367 1.9e-16 91.3 159 42.1
TAR362G0739 Trochodendron aralioides HOM05D004826 ORTHO05D006367 1.2e-15 88.6 159 39.6
COL.COLO4_05144 Corchorus olitorius HOM05D004826 ORTHO05D006367 2.1e-15 87.8 85 55.3
BcaC05g24557 Brassica carinata HOM05D001359 ORTHO05D001200 4.7e-15 86.7 212 35.4
Sabra02G0041400 Salix brachista HOM05D004826 ORTHO05D006367 2.2e-12 77.8 50 68.0
C01p00040 Brassica napus HOM05D004826 ORTHO05D006367 7.8e-10 69.3 134 37.3
PRCOL_00006778 Prasinoderma coloniale HOM05D004826 ORTHO05D006367 1.5e-08 65.1 167 29.3
BraA09t42133Z Brassica rapa HOM05D004826 ORTHO05D006367 9.5e-08 62.4 79 50.6
Cfa009094 Carpinus fangiana HOM05D000453 ORTHO05D000387 9.5e-08 62.4 176 27.3
PGSC0003DMG400001922 Solanum tuberosum HOM05D000453 ORTHO05D000387 9.5e-08 62.4 172 27.9
Migut.I00057 Erythranthe guttata HOM05D000453 ORTHO05D000387 1.2e-07 62.0 151 30.5
arahy.Tifrunner.gnm1.ann1.C0LV86 Arachis hypogaea HOM05D000453 ORTHO05D000387 1.6e-07 61.6 187 26.7
CDE07G1977 Ceratophyllum demersum HOM05D003852 ORTHO05D003095 2.1e-07 61.2 67 53.7
Solyc04g005020.3 Solanum lycopersicum HOM05D000453 ORTHO05D000387 3.6e-07 60.5 172 27.9
vmacro19271 Vaccinium macrocarpon HOM05D000464 ORTHO05D006292 3.6e-07 60.5 178 26.4
vmacro23261 Vaccinium macrocarpon HOM05D000464 ORTHO05D006292 3.6e-07 60.5 178 26.4
Sopen04g001030 Solanum pennellii HOM05D000453 ORTHO05D000387 4.7e-07 60.1 172 27.9
A09p67980 Brassica napus HOM05D004826 ORTHO05D006367 6.2e-07 59.7 79 49.4
Oeu040654.1 Olea europaea HOM05D004826 ORTHO05D006367 6.2e-07 59.7 99 41.4
Aqoxy3G03109 Aquilegia oxysepala HOM05D000453 ORTHO05D000387 8.0e-07 59.3 178 30.3
AL1G37940 Arabidopsis lyrata HOM05D000453 ORTHO05D000387 8.0e-07 59.3 177 28.8
AT1G24130 Arabidopsis thaliana HOM05D000453 ORTHO05D000387 1.1e-06 58.9 177 28.8
Sc04g0008840 Simmondsia chinensis HOM05D000453 ORTHO05D000387 1.4e-06 58.5 173 28.3
C05p23250 Brassica napus HOM05D000453 ORTHO05D000387 2.3e-06 57.8 177 28.2
C08p52400 Brassica napus HOM05D004826 ORTHO05D042801 3.1e-06 57.4 44 63.6
Lalb_Chr12g0201371 Lupinus albus HOM05D000453 ORTHO05D000387 3.1e-06 57.4 191 25.7
Aqoxy3G03107 Aquilegia oxysepala HOM05D000453 ORTHO05D000387 4.0e-06 57.0 177 31.6
arahy.Tifrunner.gnm1.ann1.820J93 Arachis hypogaea HOM05D000453 ORTHO05D000387 5.2e-06 56.6 187 25.7
MBI14_g12781_MAGBIO Magnolia biondii HOM05D000453 ORTHO05D000387 5.2e-06 56.6 173 26.6
BcaB07g32412 Brassica carinata HOM05D000453 ORTHO05D000387 6.8e-06 56.2 180 28.3
Potri.012G076000 Populus trichocarpa HOM05D000453 ORTHO05D000387 8.9e-06 55.8 172 29.7


User provided reference genes

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