Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR044G1830 Punica granatum HOM05D006778 ORTHO05D008341 1.1e-69 266.5 135 100.0
PGR044G0410 Punica granatum HOM05D006778 ORTHO05D008341 8.9e-56 220.3 132 84.1
Manes.12G043800 Manihot esculenta HOM05D006778 ORTHO05D008341 3.5e-36 155.2 127 61.4
Lj3g0024250 Lotus japonicus HOM05D006778 ORTHO05D008341 5.1e-35 151.4 130 57.7
Glyma.10G042900 Glycine max HOM05D006778 ORTHO05D008341 6.6e-35 151.0 130 59.2
Potri.002G252700 Populus trichocarpa HOM05D006778 ORTHO05D008341 2.5e-34 149.1 126 61.1
Actinidia37573 Actinidia chinensis HOM05D006778 ORTHO05D008341 5.6e-34 147.9 130 57.7
FAN15G2222 Fragaria x ananassa HOM05D006778 ORTHO05D008341 2.8e-33 145.6 128 57.0
Sabra02G0191900 Salix brachista HOM05D006778 ORTHO05D008341 2.8e-33 145.6 126 59.5
CiPaw.03G152900 Carya illinoinensis HOM05D006778 ORTHO05D008341 6.2e-33 144.4 130 56.2
Lj5g0022938 Lotus japonicus HOM05D006778 ORTHO05D008341 8.1e-33 144.1 130 56.2
TAR362G0656 Trochodendron aralioides HOM05D006778 ORTHO05D008341 8.1e-33 144.1 132 59.8
SGA_v2.0_scaffold8G04666 Striga asiatica HOM05D006778 ORTHO05D008341 3.1e-32 142.1 132 57.6
Glyma.13G130200 Glycine max HOM05D006778 ORTHO05D008341 6.9e-32 141.0 124 57.3
GSVIVG01028519001 Vitis vinifera HOM05D006778 ORTHO05D008341 6.9e-32 141.0 130 56.9
FvH4_2g19780 Fragaria vesca HOM05D006778 ORTHO05D008341 1.5e-31 139.8 142 52.1
Prupe.8G209000 Prunus persica HOM05D006778 ORTHO05D008341 1.5e-31 139.8 128 58.6
Thecc.01G232400 Theobroma cacao HOM05D006778 ORTHO05D008341 2.0e-31 139.4 175 48.6
Cpa.g.sc8.198 Carica papaya HOM05D006778 ORTHO05D008341 2.6e-31 139.0 128 56.2
RcHm_v2.0_Chr6g0285481 Rosa chinensis HOM05D006778 ORTHO05D008341 3.4e-31 138.7 141 53.2
Solyc06g008020.3 Solanum lycopersicum HOM05D006778 ORTHO05D008341 5.8e-31 137.9 136 50.7
Phvul.007G156300 Phaseolus vulgaris HOM05D006778 ORTHO05D008341 7.6e-31 137.5 130 53.8
CAN.G941.43 Capsicum annuum HOM05D006778 ORTHO05D008341 9.9e-31 137.1 132 53.0
Cc01_g17420 Coffea canephora HOM05D006778 ORTHO05D008341 9.9e-31 137.1 127 56.7
Psat6g064720 Pisum sativum HOM05D006778 ORTHO05D008341 1.7e-30 136.3 144 52.1
THA.LOC104820057 Tarenaya hassleriana HOM05D006778 ORTHO05D008341 2.9e-30 135.6 132 52.3
Lalb_Chr21g0314231 Lupinus albus HOM05D006778 ORTHO05D008341 3.8e-30 135.2 131 54.2
Cfa002523 Carpinus fangiana HOM05D006778 ORTHO05D008341 6.4e-30 134.4 124 54.8
Sed0012724 Sechium edule HOM05D006778 ORTHO05D008341 6.4e-30 134.4 127 51.2
CiPaw.04G108200 Carya illinoinensis HOM05D006778 ORTHO05D008341 1.1e-29 133.7 157 46.5
Nitab4.5_0003180g0010 Nicotiana tabacum HOM05D006778 ORTHO05D008341 1.1e-29 133.7 133 51.1
Sopen06g002860 Solanum pennellii HOM05D006778 ORTHO05D008341 1.1e-29 133.7 136 50.0
Nitab4.5_0001740g0070 Nicotiana tabacum HOM05D006778 ORTHO05D008341 1.4e-29 133.3 133 51.9
arahy.Tifrunner.gnm1.ann1.PE83GC Arachis hypogaea HOM05D006778 ORTHO05D008341 3.2e-29 132.1 128 50.8
DCAR_012626 Daucus carota HOM05D006778 ORTHO05D008341 3.2e-29 132.1 147 51.0
Gohir.D08G211201 Gossypium hirsutum HOM05D006778 ORTHO05D008341 3.2e-29 132.1 159 50.9
Medtr1g069150 Medicago truncatula HOM05D006778 ORTHO05D008341 3.2e-29 132.1 145 51.0
Gorai.004G223900 Gossypium raimondii HOM05D006778 ORTHO05D008341 4.2e-29 131.7 173 47.4
Rhsim13G0042100 Rhododendron simsii HOM05D006778 ORTHO05D008341 5.4e-29 131.3 125 54.4
MD05G1182200 Malus domestica HOM05D006778 ORTHO05D008341 7.1e-29 131.0 126 55.6
Aqoxy2G03836 Aquilegia oxysepala HOM05D006778 ORTHO05D008341 2.1e-28 129.4 130 51.5
arahy.Tifrunner.gnm1.ann1.01AYHN Arachis hypogaea HOM05D006778 ORTHO05D008341 2.1e-28 129.4 128 50.0
Nn1g03098 Nelumbo nucifera HOM05D006778 ORTHO05D008341 2.7e-28 129.0 150 50.0
vmacro02733 Vaccinium macrocarpon HOM05D006778 ORTHO05D008341 3.5e-28 128.6 159 49.1
Duzib133G1327 Durio zibethinus HOM05D006778 ORTHO05D008341 4.6e-28 128.3 172 43.6
ClCG07G001620 Citrullus lanatus HOM05D006778 ORTHO05D008341 6.0e-28 127.9 128 51.6
CsaV3_6G036140 Cucumis sativus L. HOM05D006778 ORTHO05D008341 6.0e-28 127.9 129 51.9
Migut.D00505 Erythranthe guttata HOM05D006778 ORTHO05D008341 1.0e-27 127.1 129 51.2
MELO3C026499.2 Cucumis melo HOM05D006778 ORTHO05D008341 1.3e-27 126.7 129 51.2
ECA247G0226 Erigeron canadensis HOM05D000070 ORTHO05D003190 1.7e-27 126.3 133 48.9
TPR.G33801 Trifolium pratense HOM05D006778 ORTHO05D008341 1.7e-27 126.3 144 50.7
Pp3c19_5220 Physcomitrium patens HOM05D006778 ORTHO05D008341 2.3e-27 125.9 131 51.9
COL.COLO4_28579 Corchorus olitorius HOM05D006778 ORTHO05D008341 3.9e-27 125.2 161 47.8
Gohir.A08G193200 Gossypium hirsutum HOM05D006778 ORTHO05D008341 8.7e-27 124.0 168 45.2
ATR0787G018 Amborella trichopoda HOM05D006778 ORTHO05D008341 1.9e-26 122.9 127 48.8
CANSAT01G2408 Cannabis sativa HOM05D006778 ORTHO05D008341 2.5e-26 122.5 153 44.4
CANSAT01G3118 Cannabis sativa HOM05D006778 ORTHO05D008341 2.5e-26 122.5 153 44.4
AUR62031811 Chenopodium quinoa HOM05D006778 ORTHO05D008341 2.5e-26 122.5 166 44.6
FAN24G1005 Fragaria x ananassa HOM05D006778 ORTHO05D008341 7.3e-26 120.9 144 45.8
QL07p037469 Quercus lobata HOM05D006778 ORTHO05D008341 7.3e-26 120.9 161 44.7
EL10Ac7g17819 Beta vulgaris HOM05D006778 ORTHO05D008341 3.1e-24 115.5 137 46.7
BcaC09g51658 Brassica carinata HOM05D006778 ORTHO05D008341 3.1e-24 115.5 156 41.0
BcaNung01362 Brassica carinata HOM05D006778 ORTHO05D008341 1.2e-23 113.6 156 41.7
Sp7g26820 Schrenkiella parvula HOM05D006778 ORTHO05D008341 1.2e-23 113.6 155 42.6
Mapoly0102s0014 Marchantia polymorpha HOM05D006778 ORTHO05D008341 2.9e-22 109.0 132 44.7
Carub.0007s1182 Capsella rubella HOM05D006778 ORTHO05D008341 3.8e-22 108.6 163 41.7
Thhalv10026155m.g Eutrema salsugineum HOM05D006778 ORTHO05D008341 3.8e-22 108.6 162 40.7
CDE06G1811 Ceratophyllum demersum HOM05D006778 ORTHO05D008341 1.4e-21 106.7 148 41.9
HPP92_014070 Vanilla planifolia HOM05D006778 ORTHO05D008341 1.4e-21 106.7 128 48.4
CARHR236610 Cardamine hirsuta HOM05D006778 ORTHO05D008341 4.2e-21 105.1 163 38.7
CBR_g29688 Chara braunii HOM05D006778 ORTHO05D008341 3.5e-20 102.1 141 41.8
AT4G28820 Arabidopsis thaliana HOM05D006778 ORTHO05D008341 6.0e-20 101.3 163 39.9
Atru.chr5.1931 Acer truncatum HOM05D006778 ORTHO05D008341 3.0e-19 99.0 101 54.5
A01p09090 Brassica napus HOM05D006778 ORTHO05D008341 5.1e-19 98.2 167 36.5
CDE07G0370 Ceratophyllum demersum HOM05D006778 ORTHO05D008341 5.1e-19 98.2 134 44.8
SMO111G0074 Selaginella moellendorffii HOM05D006778 ORTHO05D008341 1.1e-18 97.1 129 43.4
Zm00001eb149030 Zea mays HOM05D006778 ORTHO05D008341 1.1e-18 97.1 127 43.3
PGSC0003DMG400014691 Solanum tuberosum HOM05D006778 ORTHO05D008341 9.6e-18 94.0 108 48.1
AUR62008897 Chenopodium quinoa HOM05D006778 ORTHO05D008341 1.3e-17 93.6 144 43.8
BolC1t01026H Brassica oleracea HOM05D006778 ORTHO05D008341 1.6e-17 93.2 171 35.1
C01p10640 Brassica napus HOM05D006778 ORTHO05D008341 3.6e-17 92.0 168 36.3
Actinidia30101 Actinidia chinensis HOM05D006778 ORTHO05D008341 6.2e-17 91.3 74 62.2
Haze_24755 Corylus avellana HOM05D006778 ORTHO05D008341 1.8e-16 89.7 90 48.9
Haze_24757 Corylus avellana HOM05D006778 ORTHO05D008341 3.1e-16 89.0 106 43.4
Dinv19236 Davidia involucrata HOM05D006778 ORTHO05D008341 4.0e-16 88.6 133 39.1
TWI14G0487 Tripterygium wilfordii HOM05D006778 ORTHO05D008341 6.9e-16 87.8 185 34.6
CSS0042066 Camellia sinensis var. sinensis HOM05D006778 ORTHO05D008341 1.5e-15 86.7 140 39.3
AL7G23670 Arabidopsis lyrata HOM05D006778 ORTHO05D008341 2.0e-15 86.3 191 33.0
AagrBONN_evm.TU.Sc2ySwM_228.3325 Anthoceros agrestis HOM05D006778 ORTHO05D008341 2.6e-15 85.9 130 38.5
BraA01t00857Z Brassica rapa HOM05D006778 ORTHO05D008341 9.9e-15 84.0 167 34.1
BolC7t46124H Brassica oleracea HOM05D006778 ORTHO05D008341 4.2e-13 78.6 197 29.9
Lsat_1_v5_gn_9_11140 Lactuca sativa HOM05D006778 ORTHO05D008341 4.2e-13 78.6 90 47.8
Hund05528 Selenicereus undatus HOM05D006778 ORTHO05D008341 2.1e-12 76.3 109 46.8
MD10G1170500 Malus domestica HOM05D006778 ORTHO05D008341 2.7e-12 75.9 125 40.0
Sc17g0002480 Simmondsia chinensis HOM05D006778 ORTHO05D008341 2.7e-12 75.9 95 46.3
Peaxi162Scf00499g00413 Petunia axillaris HOM05D006778 ORTHO05D008341 4.6e-12 75.1 99 44.4
C07p56450 Brassica napus HOM05D006778 ORTHO05D008341 1.0e-11 73.9 197 28.9
Aa31LG2G21570 Aethionema arabicum HOM05D006778 ORTHO05D008341 1.8e-11 73.2 159 32.7
MSTRG.18371 Avicennia marina HOM05D006778 ORTHO05D008341 1.8e-11 73.2 130 36.9
A03p58430 Brassica napus HOM05D006778 ORTHO05D008341 3.0e-11 72.4 194 29.4
MCO09G744 Micromonas commoda HOM05D004020 ORTHO05D004735 5.1e-11 71.6 135 33.3
VMungo0720G2677 Vigna mungo HOM05D006778 ORTHO05D008341 1.1e-10 70.5 110 39.1
Hma1.2p1_1858F.1_g305520 Hydrangea macrophylla HOM05D006778 ORTHO05D008341 3.3e-10 68.9 49 57.1
SEGI_27672 Sequoiadendron giganteum HOM05D006778 ORTHO05D008341 1.3e-09 67.0 54 63.0
Ca_09622_v3 Cicer arietinum L. HOM05D006778 ORTHO05D008341 2.8e-09 65.9 110 39.1
AagrBONN_evm.TU.Sc2ySwM_368.1574 Anthoceros agrestis HOM05D006778 ORTHO05D008341 3.7e-09 65.5 110 37.3
Sed0026958 Sechium edule HOM05D006778 ORTHO05D008341 1.1e-08 63.9 67 47.8
MBI11_g20194_MAGBIO Magnolia biondii HOM05D006778 ORTHO05D008341 1.4e-08 63.5 96 42.7
Gohir.D08G007200 Gossypium hirsutum HOM05D006778 ORTHO05D008341 4.0e-08 62.0 83 48.2
PSO017G3634 Papaver somniferum HOM05D006778 ORTHO05D008341 1.2e-07 60.5 116 33.6
PSO063G2427 Papaver somniferum HOM05D006778 ORTHO05D008341 1.5e-07 60.1 106 33.0
SalBow4G2567 Salvia bowleyana HOM05D006778 ORTHO05D008341 3.4e-07 58.9 64 51.6
Gohir.A05G416601 Gossypium hirsutum HOM05D006778 ORTHO05D008341 4.5e-07 58.5 83 47.0
Gohir.A05G417001 Gossypium hirsutum HOM05D006778 ORTHO05D008341 4.5e-07 58.5 83 47.0
Gorai.012G000200 Gossypium raimondii HOM05D006778 ORTHO05D008341 4.5e-07 58.5 83 47.0


User provided reference genes

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