Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR044G1552 Punica granatum HOM05D002744 ORTHO05D006546 3.1e-196 688.3 362 100.0
Cc02_g05710 Coffea canephora HOM05D002744 ORTHO05D006546 1.6e-128 463.4 365 67.7
Dinv21810 Davidia involucrata HOM05D002744 ORTHO05D006546 1.6e-128 463.4 366 68.9
CSS0032617 Camellia sinensis var. sinensis HOM05D002744 ORTHO05D006546 2.1e-128 463.0 369 70.2
Eucgr.J00153 Eucalyptus grandis HOM05D002744 ORTHO05D006546 2.1e-128 463.0 363 71.3
QL08p064289 Quercus lobata HOM05D002744 ORTHO05D006546 1.4e-127 460.3 364 69.5
GSVIVG01032722001 Vitis vinifera HOM05D002744 ORTHO05D006546 1.5e-126 456.8 365 67.7
vmacro09982 Vaccinium macrocarpon HOM05D002744 ORTHO05D006546 6.4e-125 451.4 380 65.5
Actinidia00987 Actinidia chinensis HOM05D002744 ORTHO05D006546 1.1e-124 450.7 366 68.0
Prupe.2G259600 Prunus persica HOM05D002744 ORTHO05D006546 9.2e-124 447.6 363 66.7
Rhsim09G0183300 Rhododendron simsii HOM05D002744 ORTHO05D006546 1.6e-123 446.8 384 65.4
CiPaw.02G197400 Carya illinoinensis HOM05D002744 ORTHO05D006546 3.5e-123 445.7 366 65.6
Nn2g11076 Nelumbo nucifera HOM05D002744 ORTHO05D006546 5.9e-123 444.9 364 65.9
MSTRG.5049 Avicennia marina HOM05D002744 ORTHO05D006546 1.3e-122 443.7 373 66.8
TAR623G1472 Trochodendron aralioides HOM05D002744 ORTHO05D006546 1.3e-122 443.7 362 66.9
Hma1.2p1_1240F.1_g269620 Hydrangea macrophylla HOM05D002744 ORTHO05D006546 3.0e-122 442.6 365 66.3
FAN10G0428 Fragaria x ananassa HOM05D002744 ORTHO05D006546 3.9e-122 442.2 361 66.2
RcHm_v2.0_Chr1g0371491 Rosa chinensis HOM05D002744 ORTHO05D006546 5.0e-122 441.8 363 65.3
Ca_06017_v3 Cicer arietinum L. HOM05D002744 ORTHO05D006546 6.6e-122 441.4 362 65.7
Nitab4.5_0000928g0070 Nicotiana tabacum HOM05D002744 ORTHO05D006546 6.6e-122 441.4 363 66.4
FvH4_7g25510 Fragaria vesca HOM05D002744 ORTHO05D006546 8.6e-122 441.0 363 65.3
ClCG07G004810 Citrullus lanatus HOM05D002744 ORTHO05D006546 1.1e-121 440.7 366 64.8
MELO3C020109.2 Cucumis melo HOM05D002744 ORTHO05D006546 1.1e-121 440.7 366 65.3
FAN01G1994 Fragaria x ananassa HOM05D002744 ORTHO05D006546 1.9e-121 439.9 361 65.7
MD07G1229400 Malus domestica HOM05D002744 ORTHO05D006546 1.9e-121 439.9 363 66.1
PGSC0003DMG400024457 Solanum tuberosum HOM05D002744 ORTHO05D006546 4.3e-121 438.7 365 65.2
ClCG00G004700 Citrullus lanatus HOM05D002744 ORTHO05D006546 5.6e-121 438.3 366 65.3
ClCG06G010230 Citrullus lanatus HOM05D002744 ORTHO05D006546 5.6e-121 438.3 366 65.3
Potri.008G075700 Populus trichocarpa HOM05D002744 ORTHO05D006546 9.5e-121 437.6 367 65.7
Duzib106G0255 Durio zibethinus HOM05D002744 ORTHO05D006546 2.1e-120 436.4 366 63.9
Haze_17322 Corylus avellana HOM05D002744 ORTHO05D006546 2.8e-120 436.0 383 64.8
CANSAT56G2377 Cannabis sativa HOM05D002744 ORTHO05D006546 4.7e-120 435.3 365 65.2
Thecc.10G007000 Theobroma cacao HOM05D002744 ORTHO05D006546 4.7e-120 435.3 366 65.3
CsaV3_5G010730 Cucumis sativus L. HOM05D002744 ORTHO05D006546 2.3e-119 433.0 366 65.8
Lalb_Chr17g0336941 Lupinus albus HOM05D002744 ORTHO05D006546 2.3e-119 433.0 366 65.6
Manes.07G139400 Manihot esculenta HOM05D002744 ORTHO05D006546 2.3e-119 433.0 370 67.8
PGSC0003DMG400009431 Solanum tuberosum HOM05D002744 ORTHO05D006546 2.3e-119 433.0 365 65.2
Glyma.02G230100 Glycine max HOM05D002744 ORTHO05D006546 3.1e-119 432.6 365 66.8
CDE04G1223 Ceratophyllum demersum HOM05D002744 ORTHO05D006546 1.5e-118 430.3 367 64.3
Sopen02g017560 Solanum pennellii HOM05D002744 ORTHO05D006546 1.5e-118 430.3 365 64.9
Solyc02g068420.4 Solanum lycopersicum HOM05D002744 ORTHO05D006546 2.6e-118 429.5 365 64.9
SGA_v2.0_scaffold5G02937 Striga asiatica HOM05D000129 ORTHO05D000144 4.4e-118 428.7 366 64.5
FAN03G1008 Fragaria x ananassa HOM05D002744 ORTHO05D006546 1.3e-117 427.2 378 62.4
FAN06G0491 Fragaria x ananassa HOM05D002744 ORTHO05D006546 2.2e-117 426.4 378 62.2
DCAR_011892 Daucus carota HOM05D002744 ORTHO05D006546 3.7e-117 425.6 365 65.8
MD01G1161500 Malus domestica HOM05D002744 ORTHO05D006546 8.3e-117 424.5 363 64.2
ECA238G3482 Erigeron canadensis HOM05D002744 ORTHO05D006546 1.1e-116 424.1 367 65.4
MBI16_g02735_MAGBIO Magnolia biondii HOM05D002744 ORTHO05D006546 1.4e-116 423.7 368 64.4
Sed0016960 Sechium edule HOM05D002744 ORTHO05D006546 1.4e-116 423.7 363 65.3
Ciclev10031901m.g Citrus clementina HOM05D002744 ORTHO05D006546 4.1e-116 422.2 365 63.8
Migut.N01809 Erythranthe guttata HOM05D002744 ORTHO05D006546 7.0e-116 421.4 372 64.0
Glyma.14G196400 Glycine max HOM05D002744 ORTHO05D006546 7.0e-116 421.4 368 65.5
Gorai.011G293300 Gossypium raimondii HOM05D002744 ORTHO05D006546 2.7e-115 419.5 365 63.3
Psat0s1511g0040 Pisum sativum HOM05D002744 ORTHO05D006546 2.7e-115 419.5 361 62.0
Actinidia07807 Actinidia chinensis HOM05D002744 ORTHO05D006546 4.6e-115 418.7 365 64.4
Nitab4.5_0000263g0070 Nicotiana tabacum HOM05D002744 ORTHO05D006546 4.6e-115 418.7 399 60.4
Gohir.A10G240800 Gossypium hirsutum HOM05D002744 ORTHO05D006546 6.0e-115 418.3 365 62.5
Gohir.D10G253000 Gossypium hirsutum HOM05D002744 ORTHO05D006546 7.8e-115 417.9 366 63.1
Aqoxy2G00754 Aquilegia oxysepala HOM05D002744 ORTHO05D006546 3.0e-114 416.0 368 63.3
Phvul.008G258300 Phaseolus vulgaris HOM05D002744 ORTHO05D006546 3.9e-114 415.6 362 64.6
VMungo0647G1938 Vigna mungo HOM05D002744 ORTHO05D006546 3.9e-114 415.6 362 63.8
PSO832G1082 Papaver somniferum HOM05D002744 ORTHO05D006546 8.6e-114 414.5 380 59.7
PSO210G7497 Papaver somniferum HOM05D002744 ORTHO05D006546 1.5e-113 413.7 380 59.5
Lsat_1_v5_gn_2_125961 Lactuca sativa HOM05D002744 ORTHO05D006546 2.5e-113 412.9 358 63.4
Sabra08G0056300 Salix brachista HOM05D002744 ORTHO05D006546 3.3e-113 412.5 428 56.5
LjContig00357g0012394 Lotus japonicus HOM05D002744 ORTHO05D006546 9.5e-113 411.0 366 62.8
THA.LOC104824347 Tarenaya hassleriana HOM05D002744 ORTHO05D006546 8.1e-112 407.9 364 64.8
HanXRQChr10g0309081 Helianthus annuus HOM05D002744 ORTHO05D006546 1.1e-111 407.5 368 62.2
CSS0017108 Camellia sinensis var. sinensis HOM05D002744 ORTHO05D006546 1.4e-111 407.1 360 63.3
Lj1C963G12 Lonicera japonica HOM05D002744 ORTHO05D006546 1.8e-111 406.8 363 63.9
Lj1g0011333 Lotus japonicus HOM05D002744 ORTHO05D006546 1.5e-110 403.7 382 60.5
Peaxi162Scf00284g00133 Petunia axillaris HOM05D002744 ORTHO05D006546 5.8e-110 401.7 367 61.3
Sc10g0002810 Simmondsia chinensis HOM05D002744 ORTHO05D006546 2.2e-109 399.8 366 59.8
THA.LOC104814944 Tarenaya hassleriana HOM05D002744 ORTHO05D006546 6.4e-109 398.3 377 61.3
HanXRQChr07g0186551 Helianthus annuus HOM05D002744 ORTHO05D006546 1.4e-108 397.1 369 61.0
HPP92_001733 Vanilla planifolia HOM05D002744 ORTHO05D006546 7.1e-108 394.8 364 60.4
Hund13511 Selenicereus undatus HOM05D002744 ORTHO05D006546 3.0e-106 389.4 365 58.6
COL.COLO4_25825 Corchorus olitorius HOM05D002744 ORTHO05D006546 3.3e-105 386.0 339 64.0
Carub.0004s2268 Capsella rubella HOM05D002744 ORTHO05D006546 2.2e-101 373.2 383 56.1
Ah.05g176210 Amaranthus hybridus HOM05D002744 ORTHO05D006546 2.9e-101 372.9 369 58.8
TWI56G0434 Tripterygium wilfordii HOM05D002744 ORTHO05D006546 2.4e-100 369.8 364 59.6
SalBow1G3835 Salvia bowleyana HOM05D002744 ORTHO05D006546 3.2e-100 369.4 343 62.4
Sp4g22770 Schrenkiella parvula HOM05D002744 ORTHO05D006546 4.1e-100 369.0 389 56.8
Os05g0144200 Oryza sativa ssp. japonica HOM05D002744 ORTHO05D006546 7.1e-100 368.2 387 55.3
EL10Ac2g04290 Beta vulgaris HOM05D002744 ORTHO05D006546 1.2e-99 367.5 366 57.7
Aa31LG5G19130 Aethionema arabicum HOM05D002744 ORTHO05D006546 4.6e-99 365.5 371 57.4
Thhalv10016839m.g Eutrema salsugineum HOM05D002744 ORTHO05D006546 4.6e-99 365.5 369 56.9
TPR.G14721 Trifolium pratense HOM05D002744 ORTHO05D006546 1.5e-97 360.5 364 56.3
CARHR135540 Cardamine hirsuta HOM05D002744 ORTHO05D006546 1.9e-97 360.1 368 57.3
ATR1127G109 Amborella trichopoda HOM05D002744 ORTHO05D006546 3.3e-97 359.4 342 57.6
SalBow8G4474 Salvia bowleyana HOM05D002744 ORTHO05D006546 6.2e-96 355.1 363 58.4
AL4G38260 Arabidopsis lyrata HOM05D002744 ORTHO05D006546 8.1e-96 354.8 435 50.3
SalBow8G2269 Salvia bowleyana HOM05D002744 ORTHO05D006546 8.1e-96 354.8 363 58.4
arahy.Tifrunner.gnm1.ann1.T368MT Arachis hypogaea HOM05D002744 ORTHO05D006546 1.1e-95 354.4 361 57.3
Medtr5g083780 Medicago truncatula HOM05D002744 ORTHO05D006546 4.0e-95 352.4 366 54.6
BcaC02g12712 Brassica carinata HOM05D002744 ORTHO05D006546 2.0e-94 350.1 387 55.0
A05p01680 Brassica napus HOM05D002744 ORTHO05D006546 3.4e-94 349.4 383 52.7
BraA05t19165Z Brassica rapa HOM05D002744 ORTHO05D006546 3.4e-94 349.4 383 52.7
arahy.Tifrunner.gnm1.ann1.G9S3DZ Arachis hypogaea HOM05D002744 ORTHO05D006546 7.6e-94 348.2 367 56.4
Zm00001eb417890 Zea mays HOM05D002744 ORTHO05D006546 9.9e-94 347.8 394 51.8
AUR62012335 Chenopodium quinoa HOM05D002744 ORTHO05D006546 1.6e-91 340.5 366 55.7
BcaB06g29140 Brassica carinata HOM05D002744 ORTHO05D006546 4.6e-91 339.0 384 52.3
unitig_27.g25095 Utricularia gibba HOM05D002744 ORTHO05D006546 6.6e-90 335.1 357 54.9
AUR62022979 Chenopodium quinoa HOM05D002744 ORTHO05D006546 7.3e-89 331.6 369 55.6
CDE03G0451 Ceratophyllum demersum HOM05D002744 ORTHO05D006546 5.3e-87 325.5 369 53.1
SEGI_20256 Sequoiadendron giganteum HOM05D002744 ORTHO05D006546 2.6e-86 323.2 369 50.1
C04p68230 Brassica napus HOM05D002744 ORTHO05D006546 2.1e-83 313.5 386 50.3
BolC4t28327H Brassica oleracea HOM05D002744 ORTHO05D006546 2.1e-83 313.5 386 50.3
BraA04t18540Z Brassica rapa HOM05D002744 ORTHO05D006546 2.1e-83 313.5 386 50.8
BolC4t21844H Brassica oleracea HOM05D002744 ORTHO05D006546 2.7e-83 313.2 383 48.6
BcaC02g07313 Brassica carinata HOM05D002744 ORTHO05D006546 6.0e-83 312.0 380 49.5
C04p01940 Brassica napus HOM05D002744 ORTHO05D006546 1.8e-82 310.5 382 48.2
A04p30810 Brassica napus HOM05D002744 ORTHO05D006546 7.4e-81 305.1 386 49.7
Cpa.g.sc19.99 Carica papaya HOM05D002744 ORTHO05D008989 7.4e-73 278.5 309 54.4
CAN.G39.17 Capsicum annuum HOM05D002744 ORTHO05D006546 9.0e-71 271.6 241 61.8
AT2G40430 Arabidopsis thaliana HOM05D002744 ORTHO05D006546 2.6e-70 270.0 363 46.3
Mapoly0001s0132 Marchantia polymorpha HOM05D002744 ORTHO05D006546 1.1e-68 264.6 391 41.2
Oeu026182.1 Olea europaea HOM05D002744 ORTHO05D006546 1.4e-68 264.2 237 61.6
Ca_27928_v3 Cicer arietinum L. HOM05D002744 ORTHO05D006546 9.0e-63 245.0 299 49.8
Ca_06977_v3 Cicer arietinum L. HOM05D002744 ORTHO05D006546 2.6e-62 243.4 187 68.4
AagrBONN_evm.TU.Sc2ySwM_344.2566 Anthoceros agrestis HOM05D002744 ORTHO05D006546 3.3e-57 226.5 342 39.8
CBR_g88544 Chara braunii HOM05D002744 ORTHO05D006546 2.0e-54 217.2 440 36.1
SHI18675 Sapria himalayana HOM05D002744 ORTHO05D006546 3.4e-54 216.5 259 50.2
MBI16_g06795_MAGBIO Magnolia biondii HOM05D002744 ORTHO05D018022 3.8e-45 186.4 226 50.9
Pp3c22_7700 Physcomitrium patens HOM05D002744 ORTHO05D006546 3.9e-42 176.4 365 33.4
Oeu017758.1 Olea europaea HOM05D002744 ORTHO05D006546 4.8e-40 169.5 120 72.5
CAN.G39.16 Capsicum annuum HOM05D002744 ORTHO05D006546 3.1e-39 166.8 124 71.0
Solyc06g050820.3 Solanum lycopersicum HOM05D002744 ORTHO05D006546 2.1e-35 154.1 158 56.3
MCO01G055 Micromonas commoda HOM05D002744 ORTHO05D006546 1.8e-18 97.8 219 31.5
PRCOL_00000452 Prasinoderma coloniale HOM05D002744 ORTHO05D006546 8.9e-18 95.5 404 27.2
Aqoxy466s002 Aquilegia oxysepala HOM05D002744 ORTHO05D006546 2.8e-16 90.5 117 48.7
AUR62042571 Chenopodium quinoa HOM05D002744 ORTHO05D006546 2.8e-16 90.5 103 45.6
HanXRQChr04g0102991 Helianthus annuus HOM05D002744 ORTHO05D006546 6.3e-16 89.4 63 68.3
Atru.chr12.137 Acer truncatum HOM05D002744 ORTHO05D006546 3.1e-15 87.0 56 75.0
Cre07.g348250 Chlamydomonas reinhardtii HOM05D002744 ORTHO05D006546 1.6e-14 84.7 249 30.1
SHI18673 Sapria himalayana HOM05D002744 ORTHO05D006546 3.8e-13 80.1 56 67.9
Lsat_1_v5_gn_5_82241 Lactuca sativa HOM05D002744 ORTHO05D006546 8.0e-11 72.4 50 68.0
arahy.Tifrunner.gnm1.ann1.LJQ8FI Arachis hypogaea HOM05D002744 ORTHO05D006546 1.4e-10 71.6 60 66.7
arahy.Tifrunner.gnm1.ann1.U77MTX Arachis hypogaea HOM05D002744 ORTHO05D006546 2.0e-09 67.8 60 66.7
arahy.Tifrunner.gnm1.ann1.WF3XAB Arachis hypogaea HOM05D002744 ORTHO05D006546 2.0e-09 67.8 60 66.7
arahy.Tifrunner.gnm1.ann1.XR4RRM Arachis hypogaea HOM05D002744 ORTHO05D006546 2.0e-09 67.8 60 66.7


User provided reference genes

Program Settings