Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR044G1403 Punica granatum HOM05D004785 ORTHO05D005704 9.6e-213 743.4 428 100.0
GSVIVG01032056001 Vitis vinifera HOM05D004785 ORTHO05D005704 8.3e-140 501.1 446 68.4
Cc02_g27530 Coffea canephora HOM05D004785 ORTHO05D005704 2.4e-139 499.6 445 63.6
Prupe.2G009600 Prunus persica HOM05D004785 ORTHO05D005704 4.1e-139 498.8 430 65.8
Manes.10G146300 Manihot esculenta HOM05D004785 ORTHO05D005704 7.7e-138 494.6 445 67.9
Potri.001G269900 Populus trichocarpa HOM05D004785 ORTHO05D005704 7.7e-138 494.6 442 62.7
Phvul.005G036800 Phaseolus vulgaris HOM05D004785 ORTHO05D005704 2.9e-137 492.7 441 62.1
VMungo1080G1418 Vigna mungo HOM05D004785 ORTHO05D005704 2.9e-137 492.7 441 62.6
Hma1.2p1_0845F.1_g227490 Hydrangea macrophylla HOM05D004785 ORTHO05D005704 5.0e-137 491.9 451 66.3
CiPaw.13G002800 Carya illinoinensis HOM05D004785 ORTHO05D005704 5.5e-136 488.4 439 63.3
FAN10G3515 Fragaria x ananassa HOM05D004785 ORTHO05D005704 7.2e-136 488.0 436 63.8
Manes.07G003900 Manihot esculenta HOM05D004785 ORTHO05D005704 9.5e-136 487.6 449 67.3
FAN01G2822 Fragaria x ananassa HOM05D004785 ORTHO05D005704 1.2e-135 487.3 436 63.8
FvH4_7g00680 Fragaria vesca HOM05D004785 ORTHO05D005704 2.1e-135 486.5 436 63.8
FAN06G5068 Fragaria x ananassa HOM05D004785 ORTHO05D005704 2.1e-135 486.5 436 63.8
FAN01G2446 Fragaria x ananassa HOM05D004785 ORTHO05D005704 3.6e-135 485.7 436 63.5
CSS0016942 Camellia sinensis var. sinensis HOM05D004785 ORTHO05D005704 4.7e-135 485.3 445 67.6
CSS0030425 Camellia sinensis var. sinensis HOM05D004785 ORTHO05D005704 4.7e-135 485.3 445 67.6
Sabra09G0047800 Salix brachista HOM05D004785 ORTHO05D005704 1.4e-134 483.8 445 67.0
Glyma.08G152600 Glycine max HOM05D004785 ORTHO05D005704 2.3e-134 483.0 444 62.6
RcHm_v2.0_Chr1g0314901 Rosa chinensis HOM05D004785 ORTHO05D005704 2.3e-134 483.0 436 63.1
FAN03G2451 Fragaria x ananassa HOM05D004785 ORTHO05D005704 3.0e-134 482.6 436 63.8
TWI09G1360 Tripterygium wilfordii HOM05D004785 ORTHO05D005704 5.2e-134 481.9 455 65.3
Dinv43463 Davidia involucrata HOM05D004785 ORTHO05D005704 4.4e-133 478.8 457 61.1
Atru.chr11.2638 Acer truncatum HOM05D004785 ORTHO05D005704 5.7e-133 478.4 450 67.3
Sabra16G0165300 Salix brachista HOM05D004785 ORTHO05D005704 9.8e-133 477.6 460 63.7
QL04p005208 Quercus lobata HOM05D004785 ORTHO05D005704 3.7e-132 475.7 440 62.5
Rhsim01G0130900 Rhododendron simsii HOM05D004785 ORTHO05D005704 6.3e-132 474.9 429 63.4
Actinidia20681 Actinidia chinensis HOM05D004785 ORTHO05D005704 1.1e-131 474.2 436 67.2
Cpa.g.sc234.14 Carica papaya HOM05D004785 ORTHO05D005704 1.4e-131 473.8 471 58.4
Thecc.01G414000 Theobroma cacao HOM05D004785 ORTHO05D005704 4.1e-131 472.2 441 61.7
Eucgr.G03395 Eucalyptus grandis HOM05D004785 ORTHO05D005704 7.0e-131 471.5 429 64.3
Potri.009G064600 Populus trichocarpa HOM05D004785 ORTHO05D005704 1.6e-130 470.3 445 61.3
CANSAT11G0943 Cannabis sativa HOM05D004785 ORTHO05D005704 3.5e-130 469.2 438 66.9
arahy.Tifrunner.gnm1.ann1.59DMFX Arachis hypogaea HOM05D004785 ORTHO05D005704 4.5e-130 468.8 445 60.2
THA.LOC104801982 Tarenaya hassleriana HOM05D004785 ORTHO05D005704 4.5e-130 468.8 444 61.3
TWI73G0859 Tripterygium wilfordii HOM05D004785 ORTHO05D005704 4.5e-130 468.8 446 64.3
vmacro21177 Vaccinium macrocarpon HOM05D004785 ORTHO05D005704 7.8e-130 468.0 429 65.3
SalBow5G0866 Salvia bowleyana HOM05D004785 ORTHO05D005704 3.9e-129 465.7 439 65.1
SalBow5G5194 Salvia bowleyana HOM05D004785 ORTHO05D005704 3.9e-129 465.7 439 65.1
arahy.Tifrunner.gnm1.ann1.M8XEBR Arachis hypogaea HOM05D004785 ORTHO05D005704 6.6e-129 464.9 445 59.8
Dinv09378 Davidia involucrata HOM05D004785 ORTHO05D005704 8.6e-129 464.5 498 56.2
Nn7g36099 Nelumbo nucifera HOM05D004785 ORTHO05D005704 2.5e-128 463.0 446 62.8
Lj3g0000927 Lotus japonicus HOM05D004785 ORTHO05D005704 3.3e-128 462.6 441 59.2
Sc15g0001680 Simmondsia chinensis HOM05D004785 ORTHO05D005704 4.3e-128 462.2 434 66.1
Lalb_Chr19g0132061 Lupinus albus HOM05D004785 ORTHO05D005704 5.6e-128 461.8 443 61.2
Glyma.15G272000 Glycine max HOM05D004785 ORTHO05D005704 4.7e-127 458.8 440 60.2
Hund03669 Selenicereus undatus HOM05D004785 ORTHO05D005704 6.1e-127 458.4 432 63.4
Lalb_Chr01g0008111 Lupinus albus HOM05D004785 ORTHO05D005704 5.2e-126 455.3 446 59.4
CsaV3_7G031250 Cucumis sativus L. HOM05D004785 ORTHO05D005704 6.8e-126 454.9 450 58.7
Gohir.D08G037900 Gossypium hirsutum HOM05D004785 ORTHO05D005704 8.9e-126 454.5 437 60.6
Gorai.004G035900 Gossypium raimondii HOM05D004785 ORTHO05D005704 1.2e-125 454.1 442 60.2
Ciclev10031609m.g Citrus clementina HOM05D004785 ORTHO05D005704 3.4e-125 452.6 438 64.6
Ca_23868_v3 Cicer arietinum L. HOM05D004785 ORTHO05D005704 4.4e-125 452.2 443 66.6
Duzib138G0206 Durio zibethinus HOM05D004785 ORTHO05D005704 4.4e-125 452.2 441 59.0
Psat4g149360 Pisum sativum HOM05D004785 ORTHO05D005704 4.4e-125 452.2 448 59.8
TAR636G1066 Trochodendron aralioides HOM05D004785 ORTHO05D005704 4.4e-125 452.2 423 60.8
MD07G1006500 Malus domestica HOM05D004785 ORTHO05D005704 5.8e-125 451.8 479 55.9
PGSC0003DMG400025264 Solanum tuberosum HOM05D004785 ORTHO05D005704 1.3e-124 450.7 438 59.6
MELO3C023531.2 Cucumis melo HOM05D004785 ORTHO05D005704 1.7e-124 450.3 452 58.6
CAN.G170.130 Capsicum annuum HOM05D004785 ORTHO05D005704 2.9e-124 449.5 437 58.6
TPR.G21739 Trifolium pratense HOM05D004785 ORTHO05D005704 3.7e-124 449.1 448 59.2
TAR633G2005 Trochodendron aralioides HOM05D004785 ORTHO05D005704 1.4e-123 447.2 445 63.6
Thhalv10010376m.g Eutrema salsugineum HOM05D004785 ORTHO05D005704 1.9e-123 446.8 452 56.6
Sopen01g033900 Solanum pennellii HOM05D004785 ORTHO05D005704 1.9e-123 446.8 438 59.1
Medtr8g036890 Medicago truncatula HOM05D004785 ORTHO05D005704 3.2e-123 446.0 448 58.9
Solyc01g086890.3 Solanum lycopersicum HOM05D004785 ORTHO05D005704 4.1e-123 445.7 438 58.9
Sp5g10160 Schrenkiella parvula HOM05D004785 ORTHO05D005704 5.4e-123 445.3 456 57.0
Migut.N01482 Erythranthe guttata HOM05D004785 ORTHO05D005704 7.0e-123 444.9 439 58.1
Sed0027076 Sechium edule HOM05D004785 ORTHO05D005704 2.0e-122 443.4 445 57.5
Nn2g15504 Nelumbo nucifera HOM05D004785 ORTHO05D005704 3.5e-122 442.6 438 59.4
Carub.0005s1846 Capsella rubella HOM05D004785 ORTHO05D005704 6.0e-122 441.8 452 55.5
ECA246G0971 Erigeron canadensis HOM05D004785 ORTHO05D005704 2.3e-121 439.9 429 59.4
COL.COLO4_23900 Corchorus olitorius HOM05D004785 ORTHO05D005704 5.0e-121 438.7 436 64.2
SalBow4G2313 Salvia bowleyana HOM05D004785 ORTHO05D005704 6.6e-121 438.3 440 57.7
Lj3g0006296 Lotus japonicus HOM05D004785 ORTHO05D005704 1.5e-120 437.2 444 58.3
Hund07648 Selenicereus undatus HOM05D004785 ORTHO05D005704 3.3e-120 436.0 435 62.8
AUR62022266 Chenopodium quinoa HOM05D004785 ORTHO05D005704 7.3e-120 434.9 438 61.6
MSTRG.20603 Avicennia marina HOM05D004785 ORTHO05D005704 1.6e-119 433.7 440 58.6
HanXRQChr15g0479141 Helianthus annuus HOM05D004785 ORTHO05D005704 3.6e-119 432.6 431 59.9
MBI04_g14260_MAGBIO Magnolia biondii HOM05D004785 ORTHO05D005704 8.0e-119 431.4 439 58.8
Lsat_1_v5_gn_4_68280 Lactuca sativa HOM05D004785 ORTHO05D005704 1.1e-118 431.0 428 64.7
C08p27390 Brassica napus HOM05D004785 ORTHO05D005704 3.1e-118 429.5 461 56.0
BolC8t50356H Brassica oleracea HOM05D004785 ORTHO05D005704 4.0e-118 429.1 456 56.1
Gohir.A08G027150 Gossypium hirsutum HOM05D004785 ORTHO05D005704 4.0e-118 429.1 438 58.9
Actinidia21563 Actinidia chinensis HOM05D004785 ORTHO05D005704 5.2e-118 428.7 429 62.9
unitig_61.g26449 Utricularia gibba HOM05D004785 ORTHO05D005704 2.6e-117 426.4 431 63.3
Duzib268G1355 Durio zibethinus HOM05D004785 ORTHO05D005704 3.4e-117 426.0 433 58.0
AT3G52120 Arabidopsis thaliana HOM05D004785 ORTHO05D005704 5.8e-117 425.2 450 54.4
Aqoxy1G00294 Aquilegia oxysepala HOM05D004785 ORTHO05D005704 2.9e-116 422.9 435 57.0
A09p45180 Brassica napus HOM05D004785 ORTHO05D005704 3.7e-116 422.5 457 56.0
Aa31LG10G7210 Aethionema arabicum HOM05D004785 ORTHO05D005704 4.9e-116 422.2 496 52.4
BraA09t39981Z Brassica rapa HOM05D004785 ORTHO05D005704 3.2e-115 419.5 457 55.8
Peaxi162Scf00428g00096 Petunia axillaris HOM05D004785 ORTHO05D005704 3.2e-115 419.5 438 62.3
Nitab4.5_0006850g0010 Nicotiana tabacum HOM05D004785 ORTHO05D005704 7.0e-115 418.3 425 57.4
EL10Ac9g21166 Beta vulgaris HOM05D004785 ORTHO05D005704 7.8e-114 414.8 427 61.1
AL5G32690 Arabidopsis lyrata HOM05D004785 ORTHO05D005704 3.0e-113 412.9 470 52.1
BcaNung06094 Brassica carinata HOM05D004785 ORTHO05D005704 2.5e-112 409.8 461 54.9
SGA_v2.0_scaffold95G28788 Striga asiatica HOM05D004785 ORTHO05D005704 3.3e-112 409.5 461 57.9
HPP92_022791 Vanilla planifolia HOM05D004785 ORTHO05D005704 9.5e-112 407.9 439 63.6
MBI01_g36433_MAGBIO Magnolia biondii HOM05D004785 ORTHO05D005704 1.4e-110 404.1 444 55.6
PSO339G6673 Papaver somniferum HOM05D004785 ORTHO05D005704 2.0e-109 400.2 445 58.4
PSO384G1867 Papaver somniferum HOM05D004785 ORTHO05D005704 4.4e-109 399.1 446 57.6
CDE10G0170 Ceratophyllum demersum HOM05D004785 ORTHO05D005704 2.2e-108 396.7 443 55.5
AUR62031974 Chenopodium quinoa HOM05D004785 ORTHO05D005704 5.1e-105 385.6 437 57.4
ATR0733G146 Amborella trichopoda HOM05D004785 ORTHO05D005704 5.6e-104 382.1 434 60.1
Eucgr.J01259 Eucalyptus grandis HOM05D004785 ORTHO05D005704 9.5e-104 381.3 368 67.7
CDE10G1291 Ceratophyllum demersum HOM05D004785 ORTHO05D005704 2.1e-98 363.6 442 50.0
SEGI_00751 Sequoiadendron giganteum HOM05D004785 ORTHO05D005704 2.1e-98 363.6 440 56.8
CDE04G1996 Ceratophyllum demersum HOM05D004785 ORTHO05D005704 1.5e-93 347.4 371 54.4
Zm00001eb325220 Zea mays HOM05D004785 ORTHO05D005704 3.4e-93 346.3 438 52.3
Mapoly0063s0041 Marchantia polymorpha HOM05D004785 ORTHO05D005704 1.3e-92 344.4 484 45.5
unitig_0.g1380 Utricularia gibba HOM05D004785 ORTHO05D005704 1.3e-92 344.4 305 69.5
Lj7C568G16 Lonicera japonica HOM05D004785 ORTHO05D005704 1.9e-91 340.5 445 51.0
Sed0007108 Sechium edule HOM05D004785 ORTHO05D005704 2.3e-89 333.6 380 52.6
Oeu014580.2 Olea europaea HOM05D004785 ORTHO05D005704 3.9e-89 332.8 374 61.2
Nitab4.5_0001542g0040 Nicotiana tabacum HOM05D004785 ORTHO05D005704 9.6e-88 328.2 310 58.1
Pp3c7_22470 Physcomitrium patens HOM05D004785 ORTHO05D005704 5.3e-86 322.4 476 46.6
SMO358G0717 Selaginella moellendorffii HOM05D004785 ORTHO05D005704 1.8e-78 297.4 430 47.0
DCAR_029653 Daucus carota HOM05D004785 ORTHO05D005704 1.3e-76 291.2 425 46.1
CBR_g19876 Chara braunii HOM05D004785 ORTHO05D005704 1.7e-76 290.8 512 41.8
MD02G1315400 Malus domestica HOM05D004785 ORTHO05D005704 3.0e-73 280.0 270 61.9
Haze_03237 Corylus avellana HOM05D004785 ORTHO05D005704 1.0e-68 265.0 215 69.8
Medtr8g036260 Medicago truncatula HOM05D004785 ORTHO05D005704 3.0e-65 253.4 250 61.6
Gohir.D08G166700 Gossypium hirsutum HOM05D004785 ORTHO05D005704 1.7e-55 221.1 439 43.5
Gorai.004G174100 Gossypium raimondii HOM05D004785 ORTHO05D005704 1.8e-54 217.6 439 43.3
CARHR161860 Cardamine hirsuta HOM05D004785 ORTHO05D005704 2.9e-52 210.3 126 77.0
Eucgr.B02099 Eucalyptus grandis HOM05D004785 ORTHO05D005704 7.4e-48 195.7 127 73.2
SHI47607 Sapria himalayana HOM05D004785 ORTHO05D005704 3.0e-41 173.7 264 42.8
SHI47732 Sapria himalayana HOM05D004785 ORTHO05D005704 3.0e-41 173.7 264 42.8
AagrBONN_evm.TU.Sc2ySwM_228.206 Anthoceros agrestis HOM05D004785 ORTHO05D005704 1.3e-36 158.3 262 43.5
Gohir.A08G145800 Gossypium hirsutum HOM05D004785 ORTHO05D005704 2.2e-36 157.5 352 37.8
Cre16.g686000 Chlamydomonas reinhardtii HOM05D004785 ORTHO05D005704 4.0e-33 146.7 128 56.2
Medtr8g036255 Medicago truncatula HOM05D004785 ORTHO05D005704 2.8e-31 140.6 74 87.8
Pp3c11_4770 Physcomitrium patens HOM05D004785 ORTHO05D005704 3.1e-30 137.1 283 42.0
Pp3c11_4670 Physcomitrium patens HOM05D004785 ORTHO05D005704 4.1e-30 136.7 242 45.0
ClCG09G004330 Citrullus lanatus HOM05D004785 ORTHO05D005704 6.5e-28 129.4 69 87.0
TAR623G0847 Trochodendron aralioides HOM05D004785 ORTHO05D005704 6.1e-26 122.9 182 45.1
CARHR161850 Cardamine hirsuta HOM05D004785 ORTHO05D005704 8.0e-26 122.5 136 54.4
Oeu006578.1 Olea europaea HOM05D004785 ORTHO05D005704 1.4e-25 121.7 180 47.2
Eucgr.A02263 Eucalyptus grandis HOM05D004785 ORTHO05D005704 2.3e-25 120.9 73 76.7
DCAR_029646 Daucus carota HOM05D004785 ORTHO05D005704 3.0e-25 120.6 68 82.4
A04p07240 Brassica napus HOM05D004785 ORTHO05D005704 1.0e-20 105.5 68 70.6
TAR623G0421 Trochodendron aralioides HOM05D004785 ORTHO05D005704 7.2e-19 99.4 57 78.9
BraA04t16419Z Brassica rapa HOM05D004785 ORTHO05D005704 6.8e-17 92.8 66 63.6
BcaC02g09278 Brassica carinata HOM05D004785 ORTHO05D005704 2.0e-16 91.3 66 62.1
C04p40800 Brassica napus HOM05D004785 ORTHO05D005704 2.0e-16 91.3 66 62.1
BolC4t25664H Brassica oleracea HOM05D004785 ORTHO05D005704 2.0e-16 91.3 66 62.1
MCO15G372 Micromonas commoda HOM05D004785 ORTHO05D005704 9.2e-14 82.4 478 28.0
unitig_0.g1381 Utricularia gibba HOM05D004785 ORTHO05D005704 2.7e-13 80.9 91 52.7
AagrBONN_evm.TU.Sc2ySwM_228.74 Anthoceros agrestis HOM05D004785 ORTHO05D005704 2.3e-12 77.8 62 64.5
VMungo0720G2622 Vigna mungo HOM05D008589 ORTHO05D010715 1.2e-10 72.0 67 56.7
TAR629G2997 Trochodendron aralioides HOM05D000874 ORTHO05D001267 4.1e-06 57.0 97 36.1
Manes.09G181300 Manihot esculenta HOM05D005826 ORTHO05D004357 7.0e-06 56.2 86 40.7


User provided reference genes

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