Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR044G1247 Punica granatum HOM05D004811 ORTHO05D006888 0.0e+00 1521.1 772 100.0
Eucgr.K03557 Eucalyptus grandis HOM05D004811 ORTHO05D006888 0.0e+00 1151.3 778 76.7
Cfa018260 Carpinus fangiana HOM05D004811 ORTHO05D006888 0.0e+00 1149.4 766 76.0
CiPaw.16G007200 Carya illinoinensis HOM05D004811 ORTHO05D006888 0.0e+00 1148.3 761 76.6
Atru.chr1.2074 Acer truncatum HOM05D004811 ORTHO05D006888 0.0e+00 1146.7 768 75.0
Manes.14G160925 Manihot esculenta HOM05D004811 ORTHO05D006888 0.0e+00 1129.4 772 75.0
Dinv04542 Davidia involucrata HOM05D004811 ORTHO05D006888 0.0e+00 1122.1 752 75.5
TAR636G1158 Trochodendron aralioides HOM05D004811 ORTHO05D006888 0.0e+00 1120.5 782 74.2
COL.COLO4_04346 Corchorus olitorius HOM05D004811 ORTHO05D006888 0.0e+00 1119.4 750 75.6
Rhsim11G0174100 Rhododendron simsii HOM05D004811 ORTHO05D006888 0.0e+00 1119.4 757 74.8
Thecc.10G126600 Theobroma cacao HOM05D004811 ORTHO05D006888 0.0e+00 1109.0 752 74.6
Duzib106G1219 Durio zibethinus HOM05D004811 ORTHO05D006888 0.0e+00 1107.0 766 73.4
Ciclev10011123m.g Citrus clementina HOM05D004811 ORTHO05D006888 0.0e+00 1101.7 770 73.6
Prupe.1G353000 Prunus persica HOM05D004811 ORTHO05D006888 0.0e+00 1099.0 754 74.7
TWI18G0824 Tripterygium wilfordii HOM05D004811 ORTHO05D006888 0.0e+00 1097.8 750 74.1
Ca_04451_v3 Cicer arietinum L. HOM05D004811 ORTHO05D006888 0.0e+00 1097.4 762 73.9
CSS0026504 Camellia sinensis var. sinensis HOM05D004811 ORTHO05D006888 0.0e+00 1096.6 728 76.2
GSVIVG01032296001 Vitis vinifera HOM05D004811 ORTHO05D006888 0.0e+00 1096.3 775 72.3
CsaV3_4G031660 Cucumis sativus L. HOM05D004811 ORTHO05D006888 0.0e+00 1088.9 768 71.7
Phvul.004G051000 Phaseolus vulgaris HOM05D004811 ORTHO05D006888 0.0e+00 1087.4 760 73.2
VMungo0464G0703 Vigna mungo HOM05D004811 ORTHO05D006888 0.0e+00 1083.2 760 73.2
Gorai.N006700 Gossypium raimondii HOM05D004811 ORTHO05D006888 0.0e+00 1082.4 765 71.6
Glyma.19G064500 Glycine max HOM05D004811 ORTHO05D006888 0.0e+00 1082.0 762 72.7
Gohir.D06G178500 Gossypium hirsutum HOM05D004811 ORTHO05D006888 0.0e+00 1080.1 765 71.5
FvH4_5g27050 Fragaria vesca HOM05D004811 ORTHO05D006888 0.0e+00 1077.8 756 72.9
Psat1g085480 Pisum sativum HOM05D004811 ORTHO05D006888 0.0e+00 1077.0 749 72.9
RcHm_v2.0_Chr7g0218051 Rosa chinensis HOM05D004811 ORTHO05D006888 5.3e-312 1074.7 772 72.5
Lj2g0018835 Lotus japonicus HOM05D004811 ORTHO05D006888 5.3e-312 1073.9 758 72.3
Lalb_Chr06g0174221 Lupinus albus HOM05D004811 ORTHO05D006888 5.3e-312 1073.9 754 73.3
vmacro10447 Vaccinium macrocarpon HOM05D004811 ORTHO05D006888 5.3e-312 1073.9 760 72.0
Cc02_g18400 Coffea canephora HOM05D004811 ORTHO05D006888 1.1e-311 1073.2 750 72.1
arahy.Tifrunner.gnm1.ann1.21VBB5 Arachis hypogaea HOM05D004811 ORTHO05D006888 2.1e-311 1072.0 757 72.4
Sed0008285 Sechium edule HOM05D004811 ORTHO05D006888 2.0e-309 1065.4 769 70.2
Lj5C205G23 Lonicera japonica HOM05D004811 ORTHO05D006888 4.4e-309 1064.3 776 70.6
Nn4g25146 Nelumbo nucifera HOM05D004811 ORTHO05D006888 3.7e-308 1061.2 763 71.8
Oeu013671.1 Olea europaea HOM05D004811 ORTHO05D006888 4.9e-308 1060.8 762 71.7
Potri.003G106200 Populus trichocarpa HOM05D004811 ORTHO05D006888 4.9e-308 1060.8 776 70.4
arahy.Tifrunner.gnm1.ann1.BVJW9Q Arachis hypogaea HOM05D004811 ORTHO05D006888 1.4e-307 1059.3 776 70.7
PSO339G3970 Papaver somniferum HOM05D004811 ORTHO05D006888 5.4e-307 1057.4 779 70.1
Sopen10g022210 Solanum pennellii HOM05D004811 ORTHO05D006888 5.4e-307 1057.4 759 71.7
FAN18G4560 Fragaria x ananassa HOM05D004811 ORTHO05D006888 7.1e-307 1057.0 761 71.7
Solyc10g050540.2 Solanum lycopersicum HOM05D004811 ORTHO05D006888 1.6e-306 1055.8 759 71.7
Gohir.A06G170700 Gossypium hirsutum HOM05D004811 ORTHO05D006888 2.7e-306 1055.0 765 70.2
FAN04G3268 Fragaria x ananassa HOM05D004811 ORTHO05D006888 1.0e-305 1053.1 782 70.3
Medtr6g026900 Medicago truncatula HOM05D004811 ORTHO05D006888 5.1e-305 1050.8 750 71.3
MSTRG.5372 Avicennia marina HOM05D004811 ORTHO05D006888 1.4e-302 1042.7 755 70.5
FAN08G1445 Fragaria x ananassa HOM05D004811 ORTHO05D006888 4.4e-301 1037.7 803 68.2
Haze_17837 Corylus avellana HOM05D004811 ORTHO05D006888 2.2e-300 1035.4 765 71.0
Haze_17831 Corylus avellana HOM05D004811 ORTHO05D006888 2.9e-300 1035.0 765 71.0
MBI19_g06604_MAGBIO Magnolia biondii HOM05D004811 ORTHO05D006888 1.9e-299 1032.3 759 70.1
Ah.02g115100 Amaranthus hybridus HOM05D004811 ORTHO05D006888 1.1e-296 1023.1 761 67.9
THA.LOC104812205 Tarenaya hassleriana HOM05D004811 ORTHO05D006888 5.6e-296 1020.8 753 70.5
ECA240G1163 Erigeron canadensis HOM05D004811 ORTHO05D006888 9.9e-293 1010.0 758 69.4
PSO384G3007 Papaver somniferum HOM05D004811 ORTHO05D006888 6.4e-292 1007.3 781 67.7
Aqoxy1G00017 Aquilegia oxysepala HOM05D004811 ORTHO05D006888 5.4e-291 1004.2 759 68.4
Peaxi162Scf00003g01938 Petunia axillaris HOM05D004811 ORTHO05D006888 1.1e-288 996.5 754 68.3
Sp1g15840 Schrenkiella parvula HOM05D004811 ORTHO05D006888 3.8e-284 981.5 751 67.0
Migut.N01206 Erythranthe guttata HOM05D004811 ORTHO05D006888 4.9e-284 981.1 758 68.2
HanXRQChr03g0072161 Helianthus annuus HOM05D004811 ORTHO05D006888 4.9e-284 981.1 759 68.9
Carub.0001s1749 Capsella rubella HOM05D004811 ORTHO05D006888 6.4e-284 980.7 758 66.4
EL10Ac5g11622 Beta vulgaris HOM05D004811 ORTHO05D006888 1.9e-283 979.2 753 67.1
AL1G30120 Arabidopsis lyrata HOM05D004811 ORTHO05D006888 2.4e-283 978.8 752 67.0
C08p18170 Brassica napus HOM05D004811 ORTHO05D006888 5.4e-283 977.6 752 66.4
BolC8t49451H Brassica oleracea HOM05D004811 ORTHO05D006888 5.4e-283 977.6 752 66.4
ATR0307G027 Amborella trichopoda HOM05D004811 ORTHO05D006888 2.1e-282 975.7 784 65.8
vmacro02132 Vaccinium macrocarpon HOM05D004811 ORTHO05D006888 1.3e-281 973.0 764 67.0
A08p30750 Brassica napus HOM05D004811 ORTHO05D006888 2.3e-281 972.2 753 66.1
Aa31LG10G8540 Aethionema arabicum HOM05D004811 ORTHO05D006888 1.3e-279 966.5 752 66.1
AT1G17760 Arabidopsis thaliana HOM05D004811 ORTHO05D006888 2.1e-279 965.7 754 66.0
MELO3C008873.2 Cucumis melo HOM05D004811 ORTHO05D006888 5.3e-278 961.1 768 65.1
BraA08t35006Z Brassica rapa HOM05D004811 ORTHO05D006888 1.5e-277 959.5 777 64.1
Sc16g0003300 Simmondsia chinensis HOM05D004811 ORTHO05D006888 1.7e-276 956.1 758 66.4
Nitab4.5_0000876g0200 Nicotiana tabacum HOM05D004811 ORTHO05D006888 8.4e-276 953.7 755 66.9
Sabra03G0073000 Salix brachista HOM05D004811 ORTHO05D006888 3.3e-272 941.8 946 56.8
Thhalv10006915m.g Eutrema salsugineum HOM05D004811 ORTHO05D006888 4.3e-272 941.4 754 63.9
BcaC07g38890 Brassica carinata HOM05D004811 ORTHO05D006888 4.8e-271 937.9 725 65.2
ClCG04G004820 Citrullus lanatus HOM05D004811 ORTHO05D006888 1.4e-270 936.4 678 71.1
Lsat_1_v5_gn_9_108940 Lactuca sativa HOM05D004811 ORTHO05D006888 5.8e-269 931.0 766 65.3
CARHR018370 Cardamine hirsuta HOM05D004811 ORTHO05D006888 1.7e-268 929.5 754 63.7
Os12g0571900 Oryza sativa ssp. japonica HOM05D004811 ORTHO05D006888 9.3e-267 923.7 759 62.6
DCAR_022066 Daucus carota HOM05D004811 ORTHO05D006888 1.4e-262 909.8 753 63.9
QL02p036407 Quercus lobata HOM05D004811 ORTHO05D006888 9.3e-259 897.1 510 83.9
QL02p036870 Quercus lobata HOM05D004811 ORTHO05D006888 1.2e-258 896.7 510 83.7
PSO210G5098 Papaver somniferum HOM05D004811 ORTHO05D006888 8.2e-255 884.0 754 61.7
PSO210G4088 Papaver somniferum HOM05D004811 ORTHO05D006888 3.1e-254 882.1 746 62.9
FAN13G1880 Fragaria x ananassa HOM05D004811 ORTHO05D006888 1.3e-252 876.7 640 71.4
MD09G1000100 Malus domestica HOM05D004811 ORTHO05D006888 9.4e-251 870.5 528 80.1
PSO210G7430 Papaver somniferum HOM05D004811 ORTHO05D006888 3.9e-249 865.1 753 61.0
HPP92_012441 Vanilla planifolia HOM05D004811 ORTHO05D006888 3.8e-244 848.6 753 60.7
CDE09G0881 Ceratophyllum demersum HOM05D004811 ORTHO05D006888 4.7e-242 841.6 706 61.3
AUR62037093 Chenopodium quinoa HOM05D004811 ORTHO05D006888 2.1e-234 816.2 765 58.3
Actinidia00514 Actinidia chinensis HOM05D004811 ORTHO05D006888 4.0e-233 812.0 752 59.2
Psat2g043000 Pisum sativum HOM05D004811 ORTHO05D006888 7.4e-232 807.7 749 58.5
AUR62036481 Chenopodium quinoa HOM05D004811 ORTHO05D006888 1.7e-231 806.6 757 58.1
SEGI_25586 Sequoiadendron giganteum HOM05D004811 ORTHO05D006888 1.4e-230 803.5 773 55.2
Mapoly0001s0525 Marchantia polymorpha HOM05D004811 ORTHO05D006888 2.0e-229 799.7 837 51.9
SGA_v2.0_scaffold55G19835 Striga asiatica HOM05D004811 ORTHO05D006888 6.8e-225 784.6 637 63.9
Pp3c3_19050 Physcomitrium patens HOM05D004811 ORTHO05D006888 5.9e-221 771.5 860 50.7
SMO356G0171 Selaginella moellendorffii HOM05D004811 ORTHO05D006888 4.7e-210 735.3 763 50.9
RcHm_v2.0_Chr2g0146051 Rosa chinensis HOM05D004811 ORTHO05D006888 2.5e-203 713.0 759 53.4
unitig_8.g3575 Utricularia gibba HOM05D004811 ORTHO05D006888 1.2e-194 684.1 762 53.1
FvH4_6g34990 Fragaria vesca HOM05D004811 ORTHO05D006888 4.7e-194 682.2 753 51.1
FAN05G0989 Fragaria x ananassa HOM05D004811 ORTHO05D006888 1.4e-193 680.6 745 51.5
AagrBONN_evm.TU.Sc2ySwM_362.2211 Anthoceros agrestis HOM05D004811 ORTHO05D006888 1.1e-190 671.0 736 50.0
FAN09G3976 Fragaria x ananassa HOM05D004811 ORTHO05D006888 2.4e-190 669.8 744 50.8
FAN14G1986 Fragaria x ananassa HOM05D004811 ORTHO05D006888 2.4e-190 669.8 753 50.5
CBR_g19801 Chara braunii HOM05D004811 ORTHO05D006888 4.3e-187 659.1 792 45.7
Cpa.g.sc111.49 Carica papaya HOM05D004811 ORTHO05D006888 8.7e-164 581.6 334 82.0
Nitab4.5_0016907g0010 Nicotiana tabacum HOM05D004811 ORTHO05D006888 2.5e-147 526.9 457 63.9
HPP92_028180 Vanilla planifolia HOM05D004811 ORTHO05D006888 4.1e-121 439.9 422 55.5
Zm00001eb287160 Zea mays HOM05D004811 ORTHO05D006888 4.0e-116 423.3 460 53.7
Hund15153 Selenicereus undatus HOM05D004811 ORTHO05D006888 1.2e-99 368.6 217 79.3
CAN.G606.11 Capsicum annuum HOM05D004811 ORTHO05D006888 5.7e-99 366.3 241 74.7
PRCOL_00007255 Prasinoderma coloniale HOM05D004811 ORTHO05D006888 4.0e-92 343.6 663 33.8
MCO07G203 Micromonas commoda HOM05D004811 ORTHO05D006888 2.0e-83 314.7 792 29.4
CAN.G606.10 Capsicum annuum HOM05D004811 ORTHO05D006888 1.9e-81 308.1 182 81.3
Cre12.g506050 Chlamydomonas reinhardtii HOM05D004811 ORTHO05D006888 1.5e-78 298.5 692 31.1
Sed0024483 Sechium edule HOM05D004811 ORTHO05D006888 3.7e-74 283.9 281 59.4
QL02p036387 Quercus lobata HOM05D004811 ORTHO05D006888 7.1e-73 279.6 240 66.7
QL02p036851 Quercus lobata HOM05D004811 ORTHO05D006888 2.1e-72 278.1 240 66.2
CAN.G606.9 Capsicum annuum HOM05D004811 ORTHO05D006888 3.2e-65 254.2 368 46.5
Nitab4.5_0009440g0010 Nicotiana tabacum HOM05D004811 ORTHO05D006888 3.5e-56 224.2 128 80.5
HPP92_028179 Vanilla planifolia HOM05D004811 ORTHO05D006888 1.7e-55 221.9 167 66.5
TPR.G39924 Trifolium pratense HOM05D004811 ORTHO05D006888 9.9e-51 206.1 209 58.9
Actinidia09194 Actinidia chinensis HOM05D004811 ORTHO05D006888 4.9e-50 203.8 132 76.5
Sed0006977 Sechium edule HOM05D004811 ORTHO05D006888 1.2e-48 199.1 136 72.1
TPR.G33000 Trifolium pratense HOM05D004811 ORTHO05D006888 1.1e-44 186.0 108 79.6
Cpa.g.sc111.45 Carica papaya HOM05D004811 ORTHO05D006888 3.8e-42 177.6 181 59.7
Hund15156 Selenicereus undatus HOM05D004811 ORTHO05D006888 1.1e-33 149.4 165 55.8
Cpa.g.sc111.48 Carica papaya HOM05D004811 ORTHO05D006888 1.1e-28 132.9 95 67.4
Actinidia09197 Actinidia chinensis HOM05D004811 ORTHO05D006888 6.9e-28 130.2 127 54.3
SGA_v2.0_scaffold753G53552 Striga asiatica HOM05D004811 ORTHO05D006888 3.7e-21 107.8 130 57.7
Actinidia09195 Actinidia chinensis HOM05D004811 ORTHO05D006888 5.3e-20 104.0 55 83.6
SalBow3G0991 Salvia bowleyana HOM05D004811 ORTHO05D006888 7.2e-17 93.6 62 69.4
Mapoly0104s0010 Marchantia polymorpha HOM05D002279 ORTHO05D002644 5.1e-15 87.4 506 21.3
Actinidia09206 Actinidia chinensis HOM05D004811 ORTHO05D009793 9.7e-14 83.2 148 38.5
Thhalv10029084m.g Eutrema salsugineum HOM05D004811 ORTHO05D006888 2.2e-13 82.0 66 63.6
Gohir.A02G097201 Gossypium hirsutum HOM05D004811 ORTHO05D006888 2.2e-10 72.0 83 45.8
C03p50580 Brassica napus HOM05D004811 ORTHO05D017514 7.9e-08 63.5 88 45.5
BolC3t17347H Brassica oleracea HOM05D004811 ORTHO05D017514 1.0e-07 63.2 85 45.9
BcaC04g19678 Brassica carinata HOM05D004811 ORTHO05D017514 1.8e-07 62.4 83 45.8
C09p52830 Brassica napus HOM05D004811 ORTHO05D017514 1.8e-07 62.4 83 45.8
BolC9t58149H Brassica oleracea HOM05D004811 ORTHO05D017514 1.8e-07 62.4 83 45.8
Gohir.D01G069250 Gossypium hirsutum HOM05D004811 ORTHO05D006888 5.7e-06 57.4 58 48.3


User provided reference genes

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