Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR044G1202 Punica granatum HOM05D004694 ORTHO05D006576 0.0e+00 1178.7 569 100.0
Thecc.03G124900 Theobroma cacao HOM05D004694 ORTHO05D006576 1.1e-293 1012.7 553 87.3
Cfa018868 Carpinus fangiana HOM05D004694 ORTHO05D006576 3.1e-291 1004.6 562 85.4
Eucgr.K02748 Eucalyptus grandis HOM05D004694 ORTHO05D006576 3.4e-290 1001.1 572 84.6
Gorai.001G060900 Gossypium raimondii HOM05D004694 ORTHO05D006576 7.5e-290 1000.0 561 85.0
CiPaw.11G010700 Carya illinoinensis HOM05D004694 ORTHO05D006576 9.8e-290 999.6 566 84.6
Gohir.A07G053000 Gossypium hirsutum HOM05D004694 ORTHO05D006576 4.9e-289 997.3 561 84.7
Gohir.D07G057400 Gossypium hirsutum HOM05D004694 ORTHO05D006576 6.4e-289 996.9 561 84.8
DCAR_016413 Daucus carota HOM05D004694 ORTHO05D006576 8.3e-289 996.5 562 85.1
Medtr8g028225 Medicago truncatula HOM05D004694 ORTHO05D006576 1.9e-288 995.3 569 83.7
arahy.Tifrunner.gnm1.ann1.C9ULKZ Arachis hypogaea HOM05D004694 ORTHO05D006576 2.4e-288 995.0 570 83.9
arahy.Tifrunner.gnm1.ann1.J1V7G3 Arachis hypogaea HOM05D004694 ORTHO05D006576 7.1e-288 993.4 570 83.7
TPR.G21293 Trifolium pratense HOM05D004694 ORTHO05D006576 7.1e-288 993.4 569 83.3
ClCG03G003600 Citrullus lanatus HOM05D004694 ORTHO05D006576 9.2e-288 993.0 542 86.3
arahy.Tifrunner.gnm1.ann1.18QE6Y Arachis hypogaea HOM05D004694 ORTHO05D006576 1.6e-287 992.3 570 83.7
THA.LOC104825008 Tarenaya hassleriana HOM05D004694 ORTHO05D006576 1.6e-287 992.3 570 82.8
arahy.Tifrunner.gnm1.ann1.HVKI9W Arachis hypogaea HOM05D004694 ORTHO05D006576 3.5e-287 991.1 570 83.9
Potri.015G092000 Populus trichocarpa HOM05D004694 ORTHO05D006576 6.0e-287 990.3 561 84.5
arahy.Tifrunner.gnm1.ann1.EW3HTN Arachis hypogaea HOM05D004694 ORTHO05D006576 1.0e-286 989.6 570 83.7
Duzib205G1411 Durio zibethinus HOM05D004694 ORTHO05D006576 1.3e-286 989.2 551 85.8
TWI39G0550 Tripterygium wilfordii HOM05D004694 ORTHO05D006576 2.3e-286 988.4 556 84.5
MELO3C002350.2 Cucumis melo HOM05D004694 ORTHO05D006576 5.1e-286 987.3 542 85.8
CsaV3_1G009520 Cucumis sativus L. HOM05D004694 ORTHO05D006576 8.6e-286 986.5 542 85.8
Sed0009275 Sechium edule HOM05D004694 ORTHO05D006576 8.6e-286 986.5 560 83.9
Atru.chr9.1027_Atru.chr9.1028 Acer truncatum HOM05D004694 ORTHO05D006576 1.9e-285 985.3 570 82.6
Dinv04852 Davidia involucrata HOM05D004694 ORTHO05D006576 4.3e-285 984.2 576 82.8
Nitab4.5_0001664g0050 Nicotiana tabacum HOM05D004694 ORTHO05D006576 5.6e-285 983.8 550 85.6
CAN.G352.42 Capsicum annuum HOM05D004694 ORTHO05D006576 2.8e-284 981.5 548 85.4
Glyma.17G128000 Glycine max HOM05D004694 ORTHO05D006576 1.4e-283 979.2 570 82.5
Nitab4.5_0003680g0030 Nicotiana tabacum HOM05D004694 ORTHO05D006576 1.4e-283 979.2 550 85.6
Rhsim12G0172800 Rhododendron simsii HOM05D004694 ORTHO05D006576 1.4e-283 979.2 561 82.5
Lj4g0028142 Lotus japonicus HOM05D004694 ORTHO05D006576 3.1e-283 978.0 562 83.1
Sabra15G0113800 Salix brachista HOM05D004694 ORTHO05D006576 3.1e-283 978.0 570 82.5
CSS0001791 Camellia sinensis var. sinensis HOM05D004694 ORTHO05D006576 5.2e-283 977.2 561 83.2
Solyc03g111140.3 Solanum lycopersicum HOM05D004694 ORTHO05D006576 8.9e-283 976.5 542 85.4
Ciclev10019499m.g Citrus clementina HOM05D004694 ORTHO05D006576 1.5e-282 975.7 552 84.6
Lsat_1_v5_gn_5_13501 Lactuca sativa HOM05D004694 ORTHO05D006576 2.0e-282 975.3 552 84.6
TAR622G1078 Trochodendron aralioides HOM05D004694 ORTHO05D006576 2.6e-282 974.9 561 82.4
Peaxi162Scf00089g00419 Petunia axillaris HOM05D004694 ORTHO05D006576 3.4e-282 974.5 542 85.6
FvH4_5g07710 Fragaria vesca HOM05D004694 ORTHO05D006576 4.4e-282 974.2 553 83.7
Sopen03g030290 Solanum pennellii HOM05D004694 ORTHO05D006576 4.4e-282 974.2 542 85.6
Aqoxy3G01456 Aquilegia oxysepala HOM05D004694 ORTHO05D006576 1.3e-281 972.6 552 83.9
ECA246G0215 Erigeron canadensis HOM05D004694 ORTHO05D006576 2.2e-281 971.8 552 84.1
FAN04G1296 Fragaria x ananassa HOM05D004694 ORTHO05D006576 2.2e-281 971.8 553 83.5
FAN18G1141 Fragaria x ananassa HOM05D004694 ORTHO05D006576 2.2e-281 971.8 553 83.5
FAN08G1582 Fragaria x ananassa HOM05D004694 ORTHO05D006576 2.9e-281 971.5 553 83.4
Lalb_Chr07g0183271 Lupinus albus HOM05D004694 ORTHO05D006576 3.8e-281 971.1 561 81.3
HanXRQChr05g0154041 Helianthus annuus HOM05D004694 ORTHO05D006576 1.9e-280 968.8 553 83.7
VMungo1215G0651 Vigna mungo HOM05D004694 ORTHO05D006576 7.1e-280 966.8 550 83.5
PGSC0003DMG400015192 Solanum tuberosum HOM05D004694 ORTHO05D006576 1.2e-279 966.1 542 85.1
Solyc03g111130.1 Solanum lycopersicum HOM05D004694 ORTHO05D006576 2.7e-279 964.9 542 84.7
Sopen03g030280 Solanum pennellii HOM05D004694 ORTHO05D006576 6.0e-279 963.8 542 84.5
AL6G13430 Arabidopsis lyrata HOM05D004694 ORTHO05D006576 1.0e-278 963.0 547 83.0
Lj5C97G9 Lonicera japonica HOM05D004694 ORTHO05D006576 1.7e-278 962.2 598 78.3
Prupe.5G154600 Prunus persica HOM05D004694 ORTHO05D006576 5.1e-278 960.7 544 84.2
AT5G03860 Arabidopsis thaliana HOM05D004694 ORTHO05D006576 6.6e-278 960.3 547 82.6
CANSAT11G0344 Cannabis sativa HOM05D004694 ORTHO05D006576 8.6e-278 959.9 553 82.1
RcHm_v2.0_Chr7g0190721 Rosa chinensis HOM05D004694 ORTHO05D006576 8.6e-278 959.9 554 82.7
MD06G1147700 Malus domestica HOM05D004694 ORTHO05D006576 1.5e-277 959.1 546 83.9
vmacro16662 Vaccinium macrocarpon HOM05D004694 ORTHO05D006576 1.5e-277 959.1 593 78.4
Carub.0006s0280 Capsella rubella HOM05D004694 ORTHO05D006576 2.1e-276 955.3 547 82.6
arahy.Tifrunner.gnm1.ann1.U91AM5 Arachis hypogaea HOM05D004694 ORTHO05D006576 4.7e-276 954.1 573 81.0
Thhalv10015335m.g Eutrema salsugineum HOM05D004694 ORTHO05D006576 8.1e-276 953.4 547 81.9
BraA02t04789Z Brassica rapa HOM05D004694 ORTHO05D006576 1.4e-275 952.6 548 82.1
Migut.I00493 Erythranthe guttata HOM05D004694 ORTHO05D006576 3.1e-275 951.4 542 82.5
BolC2t06123H Brassica oleracea HOM05D004694 ORTHO05D006576 1.5e-274 949.1 548 81.8
Hma1.2p1_0014F.1_g009775 Hydrangea macrophylla HOM05D004694 ORTHO05D006576 1.5e-274 949.1 565 81.1
Sp6g38870 Schrenkiella parvula HOM05D004694 ORTHO05D006576 1.5e-274 949.1 547 81.5
CARHR209400 Cardamine hirsuta HOM05D004694 ORTHO05D006576 3.4e-274 948.0 547 81.7
Nn4g22401 Nelumbo nucifera HOM05D004694 ORTHO05D006576 1.3e-273 946.0 550 81.8
Aa31LG1G21410 Aethionema arabicum HOM05D004694 ORTHO05D006576 4.9e-273 944.1 544 81.6
Sc14g0007560 Simmondsia chinensis HOM05D004694 ORTHO05D006576 6.4e-273 943.7 553 81.2
C02p01580 Brassica napus HOM05D004694 ORTHO05D006576 1.1e-272 943.0 548 81.6
Glyma.05G045900 Glycine max HOM05D004694 ORTHO05D006576 1.1e-272 943.0 551 80.8
VMungo1215G1303 Vigna mungo HOM05D004694 ORTHO05D006576 5.4e-272 940.6 548 81.4
PSO017G1181 Papaver somniferum HOM05D004694 ORTHO05D006576 1.2e-271 939.5 550 81.3
PSO478G2802 Papaver somniferum HOM05D004694 ORTHO05D006576 4.6e-271 937.6 550 81.1
Glyma.17G128100 Glycine max HOM05D004694 ORTHO05D006576 7.8e-271 936.8 551 80.4
AUR62025866 Chenopodium quinoa HOM05D004694 ORTHO05D006576 1.3e-270 936.0 569 77.9
AUR62029660 Chenopodium quinoa HOM05D004694 ORTHO05D006576 2.3e-270 935.3 569 77.9
Phvul.003G209200 Phaseolus vulgaris HOM05D004694 ORTHO05D006576 3.9e-270 934.5 560 80.0
unitig_21.g20324 Utricularia gibba HOM05D004694 ORTHO05D006576 6.6e-270 933.7 551 81.9
CAN.G352.43 Capsicum annuum HOM05D004694 ORTHO05D006576 1.1e-269 932.9 548 80.8
PGSC0003DMG400015194 Solanum tuberosum HOM05D004694 ORTHO05D006576 1.1e-269 932.9 555 79.8
Sopen03g030270 Solanum pennellii HOM05D004694 ORTHO05D006576 1.5e-269 932.6 555 79.8
SalBow5G3571 Salvia bowleyana HOM05D004694 ORTHO05D006576 4.3e-269 931.0 555 80.5
EL10As4g23460 Beta vulgaris HOM05D004694 ORTHO05D006576 9.6e-269 929.9 565 77.9
BcaB05g21798 Brassica carinata HOM05D004694 ORTHO05D006576 4.0e-267 924.5 555 79.5
SGA_v2.0_scaffold80G25701 Striga asiatica HOM05D004694 ORTHO05D006576 1.2e-266 922.9 543 81.0
QL10p004544 Quercus lobata HOM05D004694 ORTHO05D006576 2.6e-266 921.8 518 85.5
CDE09G0730 Ceratophyllum demersum HOM05D004694 ORTHO05D006576 1.9e-264 915.6 545 79.3
Oeu044618.1 Olea europaea HOM05D004694 ORTHO05D006576 1.9e-264 915.6 524 84.5
Cpa.g.sc4.107 Carica papaya HOM05D004694 ORTHO05D006576 4.2e-264 914.4 563 78.5
Haze_07250 Corylus avellana HOM05D004694 ORTHO05D006576 9.0e-259 896.7 562 78.3
Zm00001eb079170 Zea mays HOM05D004694 ORTHO05D006576 4.6e-255 884.4 551 77.0
Ca_23552_v3 Cicer arietinum L. HOM05D004694 ORTHO05D006576 1.3e-254 882.9 570 77.0
FAN13G0009 Fragaria x ananassa HOM05D004694 ORTHO05D006576 3.3e-253 878.2 557 76.3
HPP92_023361 Vanilla planifolia HOM05D004694 ORTHO05D006576 3.7e-252 874.8 545 76.5
MSTRG.9318 Avicennia marina HOM05D004694 ORTHO05D006576 6.9e-251 870.5 497 83.1
Actinidia08860 Actinidia chinensis HOM05D004694 ORTHO05D006576 2.6e-250 868.6 566 75.8
Ah.11g044960 Amaranthus hybridus HOM05D004694 ORTHO05D006576 7.6e-250 867.1 543 74.8
ATR0824G173 Amborella trichopoda HOM05D004694 ORTHO05D006576 3.8e-249 864.8 546 75.3
SalBow1G3673 Salvia bowleyana HOM05D004694 ORTHO05D006576 1.1e-248 863.2 539 76.6
SalBow1G5430 Salvia bowleyana HOM05D004694 ORTHO05D006576 1.4e-248 862.8 539 76.6
Cc04_g10080 Coffea canephora HOM05D004694 ORTHO05D006576 1.6e-247 859.4 542 76.8
Os04g0486950 Oryza sativa ssp. japonica HOM05D004694 ORTHO05D006576 6.0e-247 857.4 556 74.8
SEGI_27575 Sequoiadendron giganteum HOM05D004694 ORTHO05D006576 1.0e-238 830.1 541 73.4
MBI11_g05409_MAGBIO Magnolia biondii HOM05D004694 ORTHO05D006576 1.9e-237 825.9 557 74.9
GSVIVG01008494001 Vitis vinifera HOM05D004694 ORTHO05D006576 1.9e-237 825.9 557 73.1
Dinv11097 Davidia involucrata HOM05D004694 ORTHO05D006576 1.9e-232 809.3 456 86.8
COL.COLO4_28061 Corchorus olitorius HOM05D004694 ORTHO05D006576 1.8e-230 802.7 553 72.9
SMO367G0555 Selaginella moellendorffii HOM05D004694 ORTHO05D006576 4.8e-228 794.7 542 70.8
CDE08G1017 Ceratophyllum demersum HOM05D004694 ORTHO05D006576 2.0e-226 789.3 506 75.7
Pp3c20_22510 Physcomitrium patens HOM05D004694 ORTHO05D006576 1.5e-221 773.1 542 68.1
Mapoly0154s0035 Marchantia polymorpha HOM05D004694 ORTHO05D006576 9.7e-221 770.4 536 68.1
AagrBONN_evm.TU.Sc2ySwM_117.2387 Anthoceros agrestis HOM05D004694 ORTHO05D006576 1.9e-216 756.1 532 68.4
Manes.14G054100 Manihot esculenta HOM05D004694 ORTHO05D006576 3.2e-216 755.4 417 86.6
QL10p004639 Quercus lobata HOM05D004694 ORTHO05D006576 4.2e-216 755.0 417 86.8
AagrBONN_evm.TU.Sc2ySwM_228.3843 Anthoceros agrestis HOM05D004694 ORTHO05D006576 6.5e-209 731.1 537 65.7
CBR_g26132 Chara braunii HOM05D004694 ORTHO05D006576 6.8e-206 721.1 536 65.1
SalBow1G1465 Salvia bowleyana HOM05D004694 ORTHO05D006576 4.5e-202 708.4 547 65.1
SalBow1G5822 Salvia bowleyana HOM05D004694 ORTHO05D006576 4.5e-202 708.4 547 65.1
TAR374G0737 Trochodendron aralioides HOM05D004694 ORTHO05D002940 3.8e-193 678.7 607 60.3
Psat4g158240 Pisum sativum HOM05D004694 ORTHO05D006576 7.8e-162 574.7 331 84.3
Phvul.003G209101 Phaseolus vulgaris HOM05D004694 ORTHO05D006576 2.5e-160 569.7 335 82.1
Actinidia36796 Actinidia chinensis HOM05D004694 ORTHO05D006576 1.5e-157 560.5 569 55.0
Cre03.g144807 Chlamydomonas reinhardtii HOM05D004694 ORTHO05D006576 3.1e-142 509.6 554 48.7
arahy.Tifrunner.gnm1.ann1.SX4PQT Arachis hypogaea HOM05D004694 ORTHO05D006576 1.7e-140 503.8 293 82.9
HPP92_023371 Vanilla planifolia HOM05D004694 ORTHO05D006576 3.1e-134 483.0 305 77.4
Ca_23555_v3 Cicer arietinum L. HOM05D004694 ORTHO05D006576 1.2e-133 481.1 323 73.1
Hund10205 Selenicereus undatus HOM05D004694 ORTHO05D006576 2.7e-122 443.4 351 66.1
Potri.012G094532 Populus trichocarpa HOM05D004694 ORTHO05D006576 1.7e-100 370.9 199 87.4
SalBow1G0618 Salvia bowleyana HOM05D004694 ORTHO05D006576 2.8e-87 327.0 516 42.1
BcaB01g05780 Brassica carinata HOM05D004694 ORTHO05D006576 2.2e-71 274.2 186 69.9
AagrBONN_evm.TU.Sc2ySwM_344.4962 Anthoceros agrestis HOM05D004694 ORTHO05D006576 1.0e-68 265.4 336 43.8
Duzib068G0556 Durio zibethinus HOM05D004694 ORTHO05D006576 1.7e-60 238.0 139 83.5
PGSC0003DMG402015193 Solanum tuberosum HOM05D004694 ORTHO05D016782 2.9e-55 220.7 126 84.9
arahy.Tifrunner.gnm1.ann1.0V01Q6 Arachis hypogaea HOM05D004694 ORTHO05D006576 1.5e-51 208.4 131 77.1
Ca_29801_v3 Cicer arietinum L. HOM05D004694 ORTHO05D006576 6.2e-50 203.0 131 75.6
VMungo1383G1618 Vigna mungo HOM05D004694 ORTHO05D046692 8.4e-47 192.6 109 75.2
BcaC08g44622 Brassica carinata HOM05D004694 ORTHO05D016782 3.5e-45 187.2 126 69.8
SalBow1G0228 Salvia bowleyana HOM05D004694 ORTHO05D006576 2.3e-44 184.5 119 73.1
BraA09t39454Z Brassica rapa HOM05D002984 ORTHO05D003561 3.0e-44 184.1 134 65.7
A03p11210 Brassica napus HOM05D004694 ORTHO05D016782 8.1e-42 176.0 124 66.9
C06p36560 Brassica napus HOM05D004694 ORTHO05D016782 8.1e-42 176.0 124 66.9
Glyma.05G045851 Glycine max HOM05D004694 ORTHO05D046692 7.6e-40 169.5 95 78.9
C06p20980 Brassica napus HOM05D004694 ORTHO05D016782 4.9e-39 166.8 117 65.8
BolC6t37284H Brassica oleracea HOM05D004694 ORTHO05D016782 4.9e-39 166.8 117 65.8
A09p39550 Brassica napus HOM05D004694 ORTHO05D016782 6.0e-37 159.8 116 64.7
BraA01t01659Z Brassica rapa HOM05D004694 ORTHO05D016782 6.0e-37 159.8 116 64.7
PGSC0003DMG401015193 Solanum tuberosum HOM05D004694 ORTHO05D006576 5.6e-35 153.3 76 89.5
Ca_03499_v3 Cicer arietinum L. HOM05D004694 ORTHO05D016782 6.9e-25 119.8 79 73.4
Ca_28596_v3 Cicer arietinum L. HOM05D004694 ORTHO05D148954 6.9e-25 119.8 118 49.2
SalBow1G3079 Salvia bowleyana HOM05D004694 ORTHO05D006576 3.8e-23 114.0 86 65.1
MD14G1161700 Malus domestica HOM05D004694 ORTHO05D248771 1.9e-22 111.7 189 39.7
AUR62040389 Chenopodium quinoa HOM05D003382 ORTHO05D003930 2.7e-21 107.8 121 47.9
Glyma.19G088650 Glycine max HOM05D004694 ORTHO05D213888 8.7e-20 102.8 60 76.7
MD14G1161800 Malus domestica HOM05D004694 ORTHO05D016782 7.1e-14 83.2 55 70.9


User provided reference genes

Program Settings