Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR044G0613 Punica granatum HOM05D005205 ORTHO05D006155 2.3e-185 652.1 346 100.0
Eucgr.J00330 Eucalyptus grandis HOM05D005205 ORTHO05D006155 2.6e-120 436.0 355 71.5
Ciclev10015886m.g Citrus clementina HOM05D005205 ORTHO05D006155 1.3e-114 417.2 341 67.7
CiPaw.16G000600 Carya illinoinensis HOM05D005205 ORTHO05D006155 2.2e-114 416.4 338 68.3
Prupe.1G351900 Prunus persica HOM05D005205 ORTHO05D006155 2.0e-112 409.8 331 67.7
Gorai.005G213800 Gossypium raimondii HOM05D005205 ORTHO05D006155 3.5e-112 409.1 265 78.9
Duzib248G0811 Durio zibethinus HOM05D005205 ORTHO05D006155 4.5e-112 408.7 339 67.8
Gohir.D02G191000 Gossypium hirsutum HOM05D005205 ORTHO05D006155 7.7e-112 407.9 265 78.9
SGA_v2.0_scaffold34G13663 Striga asiatica HOM05D005205 ORTHO05D006155 7.7e-112 407.9 313 69.6
CANSAT78G1147 Cannabis sativa HOM05D005205 ORTHO05D006155 2.2e-111 406.4 336 65.5
MD16G1004900 Malus domestica HOM05D005205 ORTHO05D006155 2.2e-111 406.4 341 65.4
Potri.010G254800 Populus trichocarpa HOM05D005205 ORTHO05D006155 2.2e-111 406.4 267 78.3
Haze_17397 Corylus avellana HOM05D005205 ORTHO05D006155 2.9e-111 406.0 366 64.2
FAN17G1859 Fragaria x ananassa HOM05D005205 ORTHO05D006155 3.8e-111 405.6 249 80.7
Thecc.02G152000 Theobroma cacao HOM05D005205 ORTHO05D006155 8.5e-111 404.4 345 65.5
CSS0028662 Camellia sinensis var. sinensis HOM05D005205 ORTHO05D006155 1.1e-110 404.1 254 81.1
Gohir.A03G167900 Gossypium hirsutum HOM05D005205 ORTHO05D006155 1.1e-110 404.1 263 78.7
ClCG11G012770 Citrullus lanatus HOM05D005205 ORTHO05D006155 1.5e-110 403.7 348 66.1
COL.COLO4_33151 Corchorus olitorius HOM05D005205 ORTHO05D006155 1.5e-110 403.7 299 72.9
TWI53G0012 Tripterygium wilfordii HOM05D005205 ORTHO05D006155 1.5e-110 403.7 339 64.0
CSS0009404 Camellia sinensis var. sinensis HOM05D005205 ORTHO05D006155 2.5e-110 402.9 254 80.7
Cc11_g00390 Coffea canephora HOM05D005205 ORTHO05D006155 2.5e-110 402.9 265 77.4
QL01p000318 Quercus lobata HOM05D005205 ORTHO05D006155 2.5e-110 402.9 255 81.6
Cfa018669 Carpinus fangiana HOM05D001610 ORTHO05D001585 3.2e-110 402.5 285 74.7
FAN07G0818 Fragaria x ananassa HOM05D005205 ORTHO05D006155 3.2e-110 402.5 255 78.4
TAR622G1118 Trochodendron aralioides HOM05D005205 ORTHO05D006155 3.2e-110 402.5 254 79.5
MBI03_g11900_MAGBIO Magnolia biondii HOM05D005205 ORTHO05D006155 4.2e-110 402.1 324 67.0
MSTRG.2087 Avicennia marina HOM05D005205 ORTHO05D006155 5.5e-110 401.7 255 78.8
Actinidia18451 Actinidia chinensis HOM05D005205 ORTHO05D006155 1.2e-109 400.6 292 71.2
Dinv17655 Davidia involucrata HOM05D005205 ORTHO05D006155 1.6e-109 400.2 248 80.2
Atru.chr11.38 Acer truncatum HOM05D005205 ORTHO05D006155 2.1e-109 399.8 343 64.7
Duzib052G0598 Durio zibethinus HOM05D005205 ORTHO05D006155 2.1e-109 399.8 350 66.6
MELO3C011767.2 Cucumis melo HOM05D005205 ORTHO05D006155 2.7e-109 399.4 344 64.8
Nn3g18536 Nelumbo nucifera HOM05D005205 ORTHO05D006155 3.6e-109 399.1 344 64.0
FvH4_4g37340 Fragaria vesca HOM05D005205 ORTHO05D006155 4.7e-109 398.7 334 66.8
RcHm_v2.0_Chr4g0447201 Rosa chinensis HOM05D005205 ORTHO05D006155 6.1e-109 398.3 251 78.9
Sc06g0007780 Simmondsia chinensis HOM05D005205 ORTHO05D006155 1.0e-108 397.5 327 65.7
CsaV3_5G029150 Cucumis sativus L. HOM05D005205 ORTHO05D006155 5.2e-108 395.2 343 64.4
Manes.04G160800 Manihot esculenta HOM05D005205 ORTHO05D006155 8.8e-108 394.4 347 63.7
DCAR_023495 Daucus carota HOM05D005205 ORTHO05D006155 1.5e-107 393.7 345 63.8
Aqoxy3G04336 Aquilegia oxysepala HOM05D005205 ORTHO05D006155 2.0e-107 393.3 252 77.4
MD13G1000800 Malus domestica HOM05D005205 ORTHO05D006155 2.0e-107 393.3 342 64.9
Sabra10G0198100 Salix brachista HOM05D005205 ORTHO05D006155 2.6e-107 392.9 329 67.5
Sed0014845 Sechium edule HOM05D005205 ORTHO05D006155 5.7e-107 391.7 349 62.8
Glyma.09G286000 Glycine max HOM05D005205 ORTHO05D006155 7.5e-107 391.3 255 76.1
Glyma.20G000300 Glycine max HOM05D005205 ORTHO05D006155 7.5e-107 391.3 259 74.5
Lj3A844T51 Lonicera japonica HOM05D005205 ORTHO05D006155 1.3e-106 390.6 255 78.4
Ca_12345_v3 Cicer arietinum L. HOM05D005205 ORTHO05D006155 2.8e-106 389.4 258 76.0
arahy.Tifrunner.gnm1.ann1.LXEK1C Arachis hypogaea HOM05D005205 ORTHO05D006155 3.7e-106 389.0 257 75.5
GSVIVG01034351001 Vitis vinifera HOM05D005205 ORTHO05D006155 3.7e-106 389.0 256 75.0
Phvul.003G000300 Phaseolus vulgaris HOM05D005205 ORTHO05D006155 1.8e-105 386.7 252 75.0
Oeu006323.1 Olea europaea HOM05D005205 ORTHO05D006155 2.4e-105 386.3 258 76.0
Migut.E00589 Erythranthe guttata HOM05D005205 ORTHO05D006155 4.1e-105 385.6 306 67.6
VMungo0251G0539 Vigna mungo HOM05D001906 ORTHO05D002083 5.3e-105 385.2 255 74.9
arahy.Tifrunner.gnm1.ann1.JXP1KB Arachis hypogaea HOM05D005205 ORTHO05D006155 7.0e-105 384.8 255 74.9
Lj2g0013395 Lotus japonicus HOM05D005205 ORTHO05D006155 7.0e-105 384.8 307 67.1
THA.LOC104800388 Tarenaya hassleriana HOM05D005205 ORTHO05D006155 9.1e-105 384.4 343 63.3
Lalb_Chr04g0259081 Lupinus albus HOM05D005205 ORTHO05D006155 2.0e-104 383.3 257 74.7
AUR62017757 Chenopodium quinoa HOM05D005205 ORTHO05D006155 3.8e-103 379.0 289 69.6
Sed0020094 Sechium edule HOM05D005205 ORTHO05D006155 3.8e-103 379.0 289 68.2
Ah.01g011460 Amaranthus hybridus HOM05D005205 ORTHO05D006155 5.0e-103 378.6 257 73.2
Sopen02g008300 Solanum pennellii HOM05D005205 ORTHO05D006155 6.5e-103 378.3 245 76.3
PSO063G1005 Papaver somniferum HOM05D005205 ORTHO05D006155 8.5e-103 377.9 294 69.0
Cpa.g.sc221.15 Carica papaya HOM05D005205 ORTHO05D006155 5.5e-102 375.2 340 62.9
PSO782G4176 Papaver somniferum HOM05D005205 ORTHO05D006155 5.5e-102 375.2 294 68.4
AUR62032894 Chenopodium quinoa HOM05D005205 ORTHO05D006155 9.4e-102 374.4 305 66.6
Aa31LG3G17990 Aethionema arabicum HOM05D005205 ORTHO05D006155 3.6e-101 372.5 339 61.4
Solyc02g049070.4 Solanum lycopersicum HOM05D005205 ORTHO05D006155 6.1e-101 371.7 314 64.3
HanXRQChr04g0099271 Helianthus annuus HOM05D005205 ORTHO05D006155 8.0e-101 371.3 260 72.3
Nitab4.5_0003034g0040 Nicotiana tabacum HOM05D005205 ORTHO05D006155 1.8e-100 370.2 315 62.9
ECA246G5176 Erigeron canadensis HOM05D005205 ORTHO05D006155 3.0e-100 369.4 255 72.9
SalBow2G1531 Salvia bowleyana HOM05D005205 ORTHO05D006155 1.5e-99 367.1 337 62.6
HanXRQChr06g0171581 Helianthus annuus HOM05D005205 ORTHO05D006155 5.7e-99 365.2 248 73.4
Nitab4.5_0000067g0040 Nicotiana tabacum HOM05D005205 ORTHO05D006155 5.7e-99 365.2 294 65.6
BcaB08g37247 Brassica carinata HOM05D005205 ORTHO05D006155 9.8e-99 364.4 334 60.2
Os04g0527800 Oryza sativa ssp. japonica HOM05D005205 ORTHO05D006155 3.7e-98 362.5 297 63.3
Lalb_Chr10g0094691 Lupinus albus HOM05D005205 ORTHO05D006155 1.1e-97 360.9 306 62.4
HPP92_007317 Vanilla planifolia HOM05D005205 ORTHO05D006155 1.1e-97 360.9 322 63.0
ATR0124G008 Amborella trichopoda HOM05D005205 ORTHO05D006155 1.4e-97 360.5 306 62.1
Oeu027937.2 Olea europaea HOM05D005205 ORTHO05D006155 1.8e-97 360.1 324 60.8
AL6G19250 Arabidopsis lyrata HOM05D005205 ORTHO05D006155 1.2e-96 357.5 302 63.9
CARHR204440 Cardamine hirsuta HOM05D005205 ORTHO05D006155 1.2e-96 357.5 343 61.5
AT5G08540 Arabidopsis thaliana HOM05D005205 ORTHO05D006155 2.7e-96 356.3 330 61.2
unitig_27.g25294 Utricularia gibba HOM05D005205 ORTHO05D006155 3.5e-96 355.9 308 63.6
Carub.0006s0750 Capsella rubella HOM05D005205 ORTHO05D006155 4.5e-96 355.5 302 63.9
BolC9t59586H Brassica oleracea HOM05D005205 ORTHO05D006155 5.9e-96 355.1 353 58.1
A10p28180 Brassica napus HOM05D005205 ORTHO05D006155 1.7e-95 353.6 348 58.9
BraA10t44867Z Brassica rapa HOM05D005205 ORTHO05D006155 1.7e-95 353.6 348 58.9
C09p68390 Brassica napus HOM05D005205 ORTHO05D006155 1.9e-94 350.1 353 57.8
Sp6g34350 Schrenkiella parvula HOM05D005205 ORTHO05D006155 2.5e-94 349.7 349 57.9
EL10Ac9g23020 Beta vulgaris HOM05D005205 ORTHO05D006155 5.5e-94 348.6 278 65.8
Thhalv10013959m.g Eutrema salsugineum HOM05D005205 ORTHO05D006155 1.8e-92 343.6 345 57.7
C03p04410 Brassica napus HOM05D005205 ORTHO05D006155 2.8e-85 319.7 336 54.8
BolC3t12972H Brassica oleracea HOM05D005205 ORTHO05D006155 1.4e-84 317.4 336 54.2
BraA03t09738Z Brassica rapa HOM05D005205 ORTHO05D006155 1.2e-83 314.3 336 53.3
A03p03920 Brassica napus HOM05D005205 ORTHO05D006155 1.3e-82 310.8 336 53.9
Medtr1g039490 Medicago truncatula HOM05D005205 ORTHO05D006155 2.2e-82 310.1 220 70.5
Lsat_1_v5_gn_3_35240 Lactuca sativa HOM05D005205 ORTHO05D006155 7.0e-81 305.1 202 74.8
BcaB01g05587 Brassica carinata HOM05D005205 ORTHO05D006155 5.0e-79 298.9 356 51.1
Zm00001eb076700 Zea mays HOM05D005205 ORTHO05D006155 6.8e-76 288.5 304 53.0
Peaxi162Scf00655g00330 Petunia axillaris HOM05D005205 ORTHO05D006155 3.4e-75 286.2 251 62.2
RcHm_v2.0_Chr6g0263291 Rosa chinensis HOM05D005205 ORTHO05D006155 1.1e-73 281.2 260 57.7
Pp3c3_33330 Physcomitrium patens HOM05D005205 ORTHO05D006155 2.3e-68 263.5 261 51.7
Mapoly0169s0014 Marchantia polymorpha HOM05D005205 ORTHO05D006155 3.4e-67 259.6 276 48.2
SMO367G0125 Selaginella moellendorffii HOM05D005205 ORTHO05D006155 1.6e-64 250.8 344 42.4
RcHm_v2.0_Chr1g0316621 Rosa chinensis HOM05D005205 ORTHO05D006155 4.6e-64 249.2 165 73.9
FAN28G1115 Fragaria x ananassa HOM05D005205 ORTHO05D006155 1.0e-55 221.5 204 60.3
CDE05G2447 Ceratophyllum demersum HOM05D005205 ORTHO05D006155 6.6e-55 218.8 142 76.1
CBR_g39443 Chara braunii HOM05D005205 ORTHO05D006155 8.7e-55 218.4 244 47.1
AagrBONN_evm.TU.Sc2ySwM_228.2354 Anthoceros agrestis HOM05D005205 ORTHO05D006155 2.4e-52 210.3 212 50.9
FAN03G0776 Fragaria x ananassa HOM05D005205 ORTHO05D006155 2.6e-51 206.8 224 54.5
Rhsim04G0130700 Rhododendron simsii HOM05D005205 ORTHO05D006155 7.1e-49 198.7 181 61.3
vmacro08834 Vaccinium macrocarpon HOM05D005205 ORTHO05D006155 1.1e-46 191.4 141 67.4
Nn1g04118 Nelumbo nucifera HOM05D005205 ORTHO05D006155 1.8e-44 184.1 126 75.4
Ca_12346_v3 Cicer arietinum L. HOM05D005205 ORTHO05D006155 8.7e-39 165.2 112 71.4
Hma1.2p1_3386F.1_g335770 Hydrangea macrophylla HOM05D005205 ORTHO05D006155 1.1e-38 164.9 184 51.6
TPR.G30235 Trifolium pratense HOM05D005205 ORTHO05D006155 1.9e-38 164.1 250 46.4
RcHm_v2.0_Chr4g0403031 Rosa chinensis HOM05D005205 ORTHO05D006155 3.7e-37 159.8 182 53.3
FAN14G4394 Fragaria x ananassa HOM05D005205 ORTHO05D006155 2.6e-35 153.7 106 72.6
Psat0s5832g0080 Pisum sativum HOM05D005205 ORTHO05D006155 3.4e-35 153.3 193 49.7
HanXRQChr01g0001451 Helianthus annuus HOM05D005205 ORTHO05D006155 1.3e-31 141.4 109 65.1
BcaB01g05586 Brassica carinata HOM05D005205 ORTHO05D006155 3.0e-31 140.2 104 64.4
Hma1.2p1_3386F.1_g335780 Hydrangea macrophylla HOM05D005205 ORTHO05D006155 5.1e-31 139.4 97 74.2
SEGI_15080 Sequoiadendron giganteum HOM05D005205 ORTHO05D006155 1.1e-30 138.3 138 56.5
Nn7g36511 Nelumbo nucifera HOM05D005205 ORTHO05D006155 4.8e-29 132.9 75 88.0
CDE05G2109 Ceratophyllum demersum HOM05D005205 ORTHO05D006155 1.7e-26 124.4 117 59.0
PRCOL_00005587 Prasinoderma coloniale HOM05D005205 ORTHO05D006155 3.8e-26 123.2 247 31.6
RcHm_v2.0_Chr3g0483721 Rosa chinensis HOM05D005205 ORTHO05D006155 2.5e-25 120.6 81 75.3
Cc00_g03890 Coffea canephora HOM05D005205 ORTHO05D006155 5.7e-22 109.4 89 64.0
SEGI_28687 Sequoiadendron giganteum HOM05D005205 ORTHO05D006155 2.2e-21 107.5 89 66.3
RcHm_v2.0_Chr3g0483731 Rosa chinensis HOM05D005205 ORTHO05D006155 8.2e-21 105.5 80 61.2
SHI21163 Sapria himalayana HOM05D005205 ORTHO05D006155 1.3e-18 98.2 139 44.6
SHI21160 Sapria himalayana HOM05D005205 ORTHO05D006155 3.8e-18 96.7 99 60.6
Nn5g29101 Nelumbo nucifera HOM05D005205 ORTHO05D006155 3.2e-17 93.6 56 83.9
TPR.G39699 Trifolium pratense HOM05D005205 ORTHO05D006155 3.2e-17 93.6 50 88.0
FAN01G2591 Fragaria x ananassa HOM05D005205 ORTHO05D006155 6.1e-16 89.4 92 53.3
TPR.G15012 Trifolium pratense HOM05D005205 ORTHO05D006155 7.9e-16 89.0 56 75.0
Mapoly0067s0102 Marchantia polymorpha HOM05D005205 ORTHO05D006155 1.1e-14 85.1 147 35.4
Cre09.g402950 Chlamydomonas reinhardtii HOM05D005205 ORTHO05D006155 1.3e-13 81.6 276 28.3
Mapoly0067s0101 Marchantia polymorpha HOM05D005205 ORTHO05D006155 5.3e-12 76.3 284 27.1
Psat5g249280 Pisum sativum HOM05D005205 ORTHO05D006155 2.9e-10 70.5 71 60.6
MBI16_g05633_MAGBIO Magnolia biondii HOM05D000869 ORTHO05D000685 3.8e-10 70.1 199 29.1
Mapoly0067s0100 Marchantia polymorpha HOM05D005205 ORTHO05D006155 3.8e-10 70.1 288 27.4
Sabra08G0000800 Salix brachista HOM05D005205 ORTHO05D006155 5.5e-09 66.2 69 55.1
SHI21161 Sapria himalayana HOM05D005205 ORTHO05D006155 2.1e-08 64.3 42 69.0


User provided reference genes

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