Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR044G0610 Punica granatum HOM05D005537 ORTHO05D006776 2.1e-284 981.9 562 100.0
CiPaw.07G200800 Carya illinoinensis HOM05D005537 ORTHO05D006776 2.3e-150 536.6 539 58.4
Manes.02G080100 Manihot esculenta HOM05D005537 ORTHO05D006776 2.3e-150 536.6 534 57.9
Haze_22074 Corylus avellana HOM05D005537 ORTHO05D006776 6.4e-148 528.5 532 58.3
Eucgr.C02216 Eucalyptus grandis HOM05D005537 ORTHO05D006776 2.4e-147 526.6 544 59.6
Cfa013489 Carpinus fangiana HOM05D005537 ORTHO05D006776 4.1e-147 525.8 536 58.0
TAR624G0592 Trochodendron aralioides HOM05D005537 ORTHO05D006776 5.4e-147 525.4 545 55.8
Thecc.08G084500 Theobroma cacao HOM05D005537 ORTHO05D006776 5.9e-146 521.9 538 55.9
ClCG11G011540 Citrullus lanatus HOM05D005537 ORTHO05D006776 1.0e-145 521.2 543 52.1
Prupe.1G069700 Prunus persica HOM05D005537 ORTHO05D006776 1.3e-145 520.8 539 57.1
COL.COLO4_28459 Corchorus olitorius HOM05D005537 ORTHO05D006776 5.0e-145 518.8 538 56.1
Ciclev10010385m.g Citrus clementina HOM05D005537 ORTHO05D006776 4.3e-144 515.8 540 55.9
MD13G1237200 Malus domestica HOM05D005537 ORTHO05D006776 5.6e-144 515.4 540 55.2
MD16G1242600 Malus domestica HOM05D005537 ORTHO05D006776 7.3e-144 515.0 539 56.6
Sed0009431 Sechium edule HOM05D005537 ORTHO05D006776 9.5e-144 514.6 542 56.3
Duzib041G0776 Durio zibethinus HOM05D005537 ORTHO05D006776 3.6e-143 512.7 538 52.0
Dinv25489 Davidia involucrata HOM05D005537 ORTHO05D006776 4.0e-142 509.2 551 51.5
QL11p009893 Quercus lobata HOM05D005537 ORTHO05D006776 1.2e-141 507.7 543 57.3
Duzib093G2104 Durio zibethinus HOM05D005537 ORTHO05D006776 9.8e-141 504.6 536 55.8
FAN17G0445 Fragaria x ananassa HOM05D005537 ORTHO05D006776 9.8e-141 504.6 536 53.4
Gorai.010G027600 Gossypium raimondii HOM05D005537 ORTHO05D006776 9.8e-141 504.6 538 54.1
FAN22G0220 Fragaria x ananassa HOM05D005537 ORTHO05D006776 1.3e-140 504.2 538 56.5
MELO3C003946.2 Cucumis melo HOM05D005537 ORTHO05D006776 1.7e-140 503.8 546 53.7
FAN07G2345 Fragaria x ananassa HOM05D005537 ORTHO05D006776 1.7e-140 503.8 543 55.6
FAN12G0761 Fragaria x ananassa HOM05D005537 ORTHO05D006776 1.7e-140 503.8 540 56.5
FvH4_4g06690 Fragaria vesca HOM05D005537 ORTHO05D006776 2.2e-140 503.4 540 56.3
Gohir.A06G025900 Gossypium hirsutum HOM05D005537 ORTHO05D006776 4.9e-140 502.3 538 53.2
Atru.chr2.2727 Acer truncatum HOM05D005537 ORTHO05D006776 1.4e-139 500.7 535 55.7
Gohir.D06G023000 Gossypium hirsutum HOM05D005537 ORTHO05D006776 1.9e-139 500.4 538 53.0
Glyma.13G103200 Glycine max HOM05D005537 ORTHO05D006776 2.4e-139 500.0 536 56.7
arahy.Tifrunner.gnm1.ann1.W452X0 Arachis hypogaea HOM05D005537 ORTHO05D006776 1.6e-138 497.3 538 52.6
arahy.Tifrunner.gnm1.ann1.HQKU7C Arachis hypogaea HOM05D005537 ORTHO05D006776 1.0e-137 494.6 542 53.5
TWI63G1753 Tripterygium wilfordii HOM05D005537 ORTHO05D006776 1.9e-136 490.3 587 50.6
Sed0014380 Sechium edule HOM05D005537 ORTHO05D006776 7.3e-136 488.4 545 49.4
Gorai.002G136300 Gossypium raimondii HOM05D005537 ORTHO05D006776 1.2e-135 487.6 525 51.0
CANSAT01G2612 Cannabis sativa HOM05D005537 ORTHO05D006776 3.1e-134 483.0 534 52.4
TPR.G37121 Trifolium pratense HOM05D005537 ORTHO05D006776 7.5e-133 478.4 530 56.6
VMungo1215G0900 Vigna mungo HOM05D005537 ORTHO05D006776 1.1e-131 474.6 535 52.9
THA.LOC104799619 Tarenaya hassleriana HOM05D005537 ORTHO05D006776 2.4e-131 473.4 530 50.0
Gohir.A01G123800 Gossypium hirsutum HOM05D005537 ORTHO05D006776 4.1e-131 472.6 531 52.4
Medtr4g133100 Medicago truncatula HOM05D005537 ORTHO05D006776 1.2e-130 471.1 526 56.3
Lju50A4T51 Lonicera japonica HOM05D005537 ORTHO05D006776 2.7e-130 469.9 534 51.1
Potri.012G036500 Populus trichocarpa HOM05D005537 ORTHO05D006776 6.0e-130 468.8 538 51.1
Lj2g0020928 Lotus japonicus HOM05D005537 ORTHO05D006776 6.6e-129 465.3 546 52.2
Lalb_Chr13g0299751 Lupinus albus HOM05D005537 ORTHO05D006776 1.1e-128 464.5 531 54.0
CSS0045027 Camellia sinensis var. sinensis HOM05D005537 ORTHO05D006776 2.5e-128 463.4 543 51.6
CSS0042006 Camellia sinensis var. sinensis HOM05D005537 ORTHO05D006776 5.6e-128 462.2 543 51.6
Ca_21044_v3 Cicer arietinum L. HOM05D005537 ORTHO05D006776 5.6e-128 462.2 534 52.1
Sabra12G0025000 Salix brachista HOM05D005537 ORTHO05D006776 6.2e-127 458.8 544 49.1
Psat4g004960 Pisum sativum HOM05D005537 ORTHO05D006776 4.4e-125 452.6 526 55.7
Sabra15G0023400 Salix brachista HOM05D005537 ORTHO05D006776 1.3e-124 451.1 534 53.6
vmacro19325 Vaccinium macrocarpon HOM05D005537 ORTHO05D006776 8.4e-124 448.4 547 47.0
CARHR192210 Cardamine hirsuta HOM05D005537 ORTHO05D006776 1.4e-123 447.6 529 48.8
Sc18g0003000 Simmondsia chinensis HOM05D005537 ORTHO05D006776 5.4e-123 445.7 543 52.5
Aa31LG1G14080 Aethionema arabicum HOM05D005537 ORTHO05D006776 9.2e-123 444.9 526 47.7
BolC9t58429H Brassica oleracea HOM05D005537 ORTHO05D006776 7.8e-122 441.8 529 49.5
BcaC04g19447 Brassica carinata HOM05D005537 ORTHO05D006776 8.6e-121 438.3 529 49.0
C09p55630 Brassica napus HOM05D005537 ORTHO05D006776 8.6e-121 438.3 529 49.0
A10p19410 Brassica napus HOM05D005537 ORTHO05D006776 5.6e-120 435.6 533 48.4
BraA10t44018Z Brassica rapa HOM05D005537 ORTHO05D006776 5.6e-120 435.6 533 48.4
BolC3t13639H Brassica oleracea HOM05D005537 ORTHO05D006776 1.2e-119 434.5 538 48.5
Thhalv10013208m.g Eutrema salsugineum HOM05D005537 ORTHO05D006776 1.2e-119 434.5 527 47.2
BcaB08g36512 Brassica carinata HOM05D005537 ORTHO05D006776 2.1e-119 433.7 538 48.9
AT5G20600 Arabidopsis thaliana HOM05D005537 ORTHO05D006776 2.8e-119 433.3 529 48.0
Cpa.g.sc115.49 Carica papaya HOM05D005537 ORTHO05D006776 2.8e-119 433.3 487 49.1
Sp6g23880 Schrenkiella parvula HOM05D005537 ORTHO05D006776 2.8e-119 433.3 528 50.6
AL6G32140 Arabidopsis lyrata HOM05D005537 ORTHO05D006776 3.6e-119 433.0 527 50.1
RhsimUnG0132200 Rhododendron simsii HOM05D005537 ORTHO05D006776 1.8e-118 430.6 541 46.8
Rhsim08G0162000 Rhododendron simsii HOM05D005537 ORTHO05D006776 5.2e-118 429.1 539 46.4
Cc06_g13120 Coffea canephora HOM05D005537 ORTHO05D006776 1.5e-117 427.6 562 48.9
PSO063G7542 Papaver somniferum HOM05D005537 ORTHO05D006776 3.4e-117 426.4 540 49.4
Peaxi162Scf00231g10125 Petunia axillaris HOM05D005537 ORTHO05D006776 3.4e-117 426.4 564 45.6
Aqoxy5G04373 Aquilegia oxysepala HOM05D005537 ORTHO05D006776 7.6e-117 425.2 572 45.6
ECA233G0023 Erigeron canadensis HOM05D005537 ORTHO05D006776 7.6e-117 425.2 531 50.5
HanXRQChr13g0401171 Helianthus annuus HOM05D005537 ORTHO05D006776 7.6e-117 425.2 538 49.1
Migut.K00238 Erythranthe guttata HOM05D005537 ORTHO05D006776 3.8e-116 422.9 548 50.2
Lsat_1_v5_gn_6_25660 Lactuca sativa HOM05D005537 ORTHO05D006776 3.2e-115 419.9 536 52.2
Carub.0006s1893 Capsella rubella HOM05D005537 ORTHO05D006776 5.4e-115 419.1 526 46.6
CiPaw.08G029800 Carya illinoinensis HOM05D005537 ORTHO05D006776 2.7e-114 416.8 490 51.0
PSO170G0047 Papaver somniferum HOM05D005537 ORTHO05D006776 2.7e-114 416.8 545 49.5
MSTRG.26216 Avicennia marina HOM05D005537 ORTHO05D006776 2.3e-113 413.7 550 46.0
Ah.09g230210 Amaranthus hybridus HOM05D005537 ORTHO05D006776 4.8e-111 406.0 538 48.1
Sopen07g006800 Solanum pennellii HOM05D005537 ORTHO05D006776 4.8e-111 406.0 564 47.0
CDE05G3054 Ceratophyllum demersum HOM05D005537 ORTHO05D006776 8.1e-111 405.2 558 42.5
CDE05G2659 Ceratophyllum demersum HOM05D005537 ORTHO05D006776 1.8e-110 404.1 545 44.2
SHI03078 Sapria himalayana HOM05D005537 ORTHO05D006776 1.8e-110 404.1 542 47.4
Solyc07g017940.1 Solanum lycopersicum HOM05D005537 ORTHO05D006776 2.4e-110 403.7 559 47.4
PGSC0003DMG400004098 Solanum tuberosum HOM05D005537 ORTHO05D006776 4.0e-110 402.9 564 46.6
AUR62021325 Chenopodium quinoa HOM05D005537 ORTHO05D006776 6.9e-110 402.1 532 44.9
SGA_v2.0_scaffold12G06075 Striga asiatica HOM05D005537 ORTHO05D006776 6.9e-110 402.1 557 45.2
Nitab4.5_0000055g0260 Nicotiana tabacum HOM05D005537 ORTHO05D006776 1.5e-109 401.0 582 42.6
DCAR_017989 Daucus carota HOM05D005537 ORTHO05D006776 3.4e-109 399.8 591 42.3
SGA_v2.0_scaffold17G07935 Striga asiatica HOM05D005537 ORTHO05D006776 3.8e-108 396.4 549 43.9
Nn8g40421 Nelumbo nucifera HOM05D005537 ORTHO05D006776 8.4e-108 395.2 559 45.1
Gohir.D01G111500 Gossypium hirsutum HOM05D005537 ORTHO05D006776 3.2e-107 393.3 450 48.4
Nitab4.5_0004772g0040 Nicotiana tabacum HOM05D005537 ORTHO05D006776 3.5e-106 389.8 576 42.4
CsaV3_2G008990 Cucumis sativus L. HOM05D005537 ORTHO05D006776 8.7e-105 385.2 321 60.4
MBI14_g19455_MAGBIO Magnolia biondii HOM05D005537 ORTHO05D006776 1.4e-102 377.9 488 52.3
CAN.G1186.23 Capsicum annuum HOM05D005537 ORTHO05D006776 1.7e-100 370.9 571 45.0
HPP92_018575 Vanilla planifolia HOM05D005537 ORTHO05D006776 1.4e-99 367.9 568 40.7
RcHm_v2.0_Chr4g0398601 Rosa chinensis HOM05D005537 ORTHO05D006776 1.9e-99 367.5 315 59.4
unitig_899.g15473 Utricularia gibba HOM05D005537 ORTHO05D006776 1.9e-99 367.5 551 40.7
C03p11680 Brassica napus HOM05D002335 ORTHO05D006282 7.1e-99 365.5 531 44.6
TPR.G1254 Trifolium pratense HOM05D005537 ORTHO05D006776 2.1e-98 364.0 529 47.8
Psat2g005880 Pisum sativum HOM05D005537 ORTHO05D006776 3.0e-97 360.1 547 42.8
A03p10160 Brassica napus HOM05D005537 ORTHO05D006776 1.1e-96 358.2 484 46.1
Os04g0658600 Oryza sativa ssp. japonica HOM05D005537 ORTHO05D006776 3.4e-93 346.7 544 44.3
Lju432C4G13 Lonicera japonica HOM05D005537 ORTHO05D006776 2.5e-91 340.5 470 43.6
ATR0580G047 Amborella trichopoda HOM05D005537 ORTHO05D006776 2.1e-90 337.4 697 35.9
Zm00001eb067650 Zea mays HOM05D005537 ORTHO05D006776 1.9e-88 330.9 540 39.6
Psat2g005840 Pisum sativum HOM05D005537 ORTHO05D006776 2.5e-83 313.9 543 39.2
Actinidia01575 Actinidia chinensis HOM05D005537 ORTHO05D006776 1.6e-82 311.2 558 40.0
GSVIVG01029258001 Vitis vinifera HOM05D008207 ORTHO05D010373 4.6e-82 309.7 441 42.0
SEGI_41129 Sequoiadendron giganteum HOM05D005537 ORTHO05D006776 1.5e-77 294.7 622 35.9
AUR62033242 Chenopodium quinoa HOM05D008207 ORTHO05D010373 1.6e-74 284.6 421 43.0
BcaB01g04778 Brassica carinata HOM05D005537 ORTHO05D006776 5.3e-70 269.6 520 35.6
SEGI_27163 Sequoiadendron giganteum HOM05D005537 ORTHO05D006776 3.2e-67 260.4 552 34.6
unitig_746.g26559 Utricularia gibba HOM05D005537 ORTHO05D006776 1.1e-64 251.9 267 47.2
BraA03t10326Z Brassica rapa HOM05D005537 ORTHO05D006776 5.7e-64 249.6 206 61.7
Mapoly0006s0254 Marchantia polymorpha HOM05D005537 ORTHO05D006776 1.4e-62 245.0 595 33.1
Pp3c17_1280 Physcomitrium patens HOM05D005537 ORTHO05D006776 2.7e-58 230.7 284 41.5
Pp3c12_970 Physcomitrium patens HOM05D005537 ORTHO05D006776 6.1e-58 229.6 655 28.9
Zm00001eb432550 Zea mays HOM05D005537 ORTHO05D006776 8.0e-58 229.2 454 38.3
EL10Ac8g18309 Beta vulgaris HOM05D005537 ORTHO05D006776 2.6e-56 224.2 417 42.7
SMO012G0033 Selaginella moellendorffii HOM05D005537 ORTHO05D006776 4.5e-53 213.4 537 32.8
MELO3C020712.2 Cucumis melo HOM05D005537 ORTHO05D006776 9.8e-48 195.7 184 55.4
AagrBONN_evm.TU.Sc2ySwM_228.2028 Anthoceros agrestis HOM05D005537 ORTHO05D006776 7.7e-45 186.0 638 25.9
Cc00_g32040 Coffea canephora HOM05D005537 ORTHO05D006776 1.4e-41 175.3 144 55.6
SMO172G0175 Selaginella moellendorffii HOM05D005537 ORTHO05D006776 2.3e-41 174.5 484 27.5
Cre01.g019200 Chlamydomonas reinhardtii HOM05D005537 ORTHO05D006776 2.3e-36 157.9 296 35.5
SEGI_03037 Sequoiadendron giganteum HOM05D005537 ORTHO05D006776 7.3e-35 152.9 550 27.1
CBR_g32208 Chara braunii HOM05D005537 ORTHO05D006776 9.5e-35 152.5 296 33.1
Glyma.17G055832 Glycine max HOM05D005537 ORTHO05D006776 7.5e-32 142.9 140 62.1
Oeu009853.2 Olea europaea HOM05D005537 ORTHO05D006776 4.9e-31 140.2 134 57.5
FvH4_5g34681 Fragaria vesca HOM05D005537 ORTHO05D006776 1.4e-30 138.7 133 55.6
PRCOL_00002161 Prasinoderma coloniale HOM05D005537 ORTHO05D006776 1.6e-26 125.2 300 30.7
FvH4_2g25020 Fragaria vesca HOM05D005537 ORTHO05D006776 2.2e-23 114.8 80 63.8
FAN24G0683 Fragaria x ananassa HOM05D005537 ORTHO05D006776 2.2e-23 114.8 80 63.8
MCO12G389 Micromonas commoda HOM05D005537 ORTHO05D006776 1.1e-19 102.4 164 36.0
unitig_746.g26560 Utricularia gibba HOM05D005537 ORTHO05D006776 7.1e-14 83.2 131 42.0
MSTRG.6231 Avicennia marina HOM05D005537 ORTHO05D006776 4.4e-08 63.9 84 46.4


User provided reference genes

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