Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR044G0499 Punica granatum HOM05D004104 ORTHO05D004755 2.1e-80 302.4 156 100.0
Eucgr.K03263 Eucalyptus grandis HOM05D004104 ORTHO05D004755 6.9e-68 260.8 156 85.3
Lalb_Chr21g0313851 Lupinus albus HOM05D004104 ORTHO05D004755 2.6e-67 258.8 156 86.5
Ca_09682_v3 Cicer arietinum L. HOM05D004104 ORTHO05D004755 4.4e-67 258.1 156 86.5
Phvul.007G193100 Phaseolus vulgaris HOM05D004104 ORTHO05D004755 5.8e-67 257.7 156 87.2
VMungo0720G2373 Vigna mungo HOM05D004104 ORTHO05D004755 5.8e-67 257.7 156 87.2
TPR.G24709 Trifolium pratense HOM05D004104 ORTHO05D004755 1.7e-66 256.1 156 85.9
Psat6g055120 Pisum sativum HOM05D004104 ORTHO05D004755 3.8e-66 255.0 156 85.3
arahy.Tifrunner.gnm1.ann1.QEJR01 Arachis hypogaea HOM05D004104 ORTHO05D004755 6.4e-66 254.2 156 84.6
Medtr1g069925 Medicago truncatula HOM05D004104 ORTHO05D004755 1.4e-65 253.1 156 84.6
Glyma.10G036900 Glycine max HOM05D004104 ORTHO05D004755 2.4e-65 252.3 156 85.3
TPR.G6322 Trifolium pratense HOM05D004104 ORTHO05D004755 3.2e-65 251.9 156 84.6
Lj5g0006581 Lotus japonicus HOM05D004104 ORTHO05D004755 9.3e-65 250.4 156 84.6
CANSAT01G3088 Cannabis sativa HOM05D004104 ORTHO05D004755 2.7e-64 248.8 155 80.6
CiPaw.03G263800 Carya illinoinensis HOM05D004104 ORTHO05D004755 3.5e-64 248.4 156 82.7
CsaV3_7G027350 Cucumis sativus L. HOM05D004104 ORTHO05D004755 4.6e-64 248.1 156 84.0
Prupe.8G224100 Prunus persica HOM05D004104 ORTHO05D004755 1.0e-63 246.9 155 80.6
ClCG09G007780 Citrullus lanatus HOM05D000113 ORTHO05D004634 3.0e-63 245.4 156 82.7
Ca_09886_v3 Cicer arietinum L. HOM05D004104 ORTHO05D004755 3.9e-63 245.0 155 84.5
MD10G1184400 Malus domestica HOM05D004104 ORTHO05D004755 6.6e-63 244.2 155 79.4
FAN27G1683 Fragaria x ananassa HOM05D005758 ORTHO05D007218 8.7e-63 243.8 153 77.8
QL09p038638 Quercus lobata HOM05D004104 ORTHO05D004755 1.1e-62 243.4 156 81.4
Cpa.g.sc50.23 Carica papaya HOM05D004104 ORTHO05D004755 3.3e-62 241.9 155 78.7
FAN15G0777 Fragaria x ananassa HOM05D005758 ORTHO05D007218 7.3e-62 240.7 153 77.1
Potri.002G038700 Populus trichocarpa HOM05D004104 ORTHO05D004755 7.3e-62 240.7 156 80.1
FAN20G0124 Fragaria x ananassa HOM05D004104 ORTHO05D004755 1.6e-61 239.6 153 76.5
arahy.Tifrunner.gnm1.ann1.0Z487T Arachis hypogaea HOM05D000348 ORTHO05D000244 6.2e-61 237.7 153 80.4
RcHm_v2.0_Chr6g0288171 Rosa chinensis HOM05D004104 ORTHO05D004755 8.1e-61 237.3 154 78.6
Sed0024271 Sechium edule HOM05D004104 ORTHO05D004755 1.1e-60 236.9 156 79.5
Atru.chr5.1672 Acer truncatum HOM05D004104 ORTHO05D004755 1.4e-60 236.5 155 78.1
arahy.Tifrunner.gnm1.ann1.6K1PAL Arachis hypogaea HOM05D000348 ORTHO05D000244 3.1e-60 235.3 153 79.7
TWI12G1345 Tripterygium wilfordii HOM05D004104 ORTHO05D004755 6.9e-60 234.2 156 75.6
Potri.005G223900 Populus trichocarpa HOM05D004104 ORTHO05D004755 9.0e-60 233.8 156 78.2
Manes.12G032000 Manihot esculenta HOM05D004104 ORTHO05D004755 1.5e-59 233.0 156 78.2
GSVIVG01028325001 Vitis vinifera HOM05D004104 ORTHO05D004755 2.9e-58 228.8 155 77.4
Glyma.13G123300 Glycine max HOM05D004104 ORTHO05D004755 4.9e-58 228.0 142 83.8
Haze_24627 Corylus avellana HOM05D005758 ORTHO05D007218 2.4e-57 225.7 147 81.0
MD05G1197800 Malus domestica HOM05D004104 ORTHO05D004755 2.4e-57 225.7 162 74.7
Thecc.01G258800 Theobroma cacao HOM05D004104 ORTHO05D004755 4.2e-57 224.9 157 76.4
Gohir.A08G190000 Gossypium hirsutum HOM05D004104 ORTHO05D004755 9.3e-57 223.8 157 76.4
Sabra02G0031000 Salix brachista HOM05D004104 ORTHO05D004755 2.1e-56 222.6 142 79.6
Gohir.D08G208500 Gossypium hirsutum HOM05D004104 ORTHO05D004755 6.0e-56 221.1 157 75.2
Gorai.004G220900 Gossypium raimondii HOM05D004104 ORTHO05D004755 6.0e-56 221.1 157 75.2
Ciclev10023660m.g Citrus clementina HOM05D004104 ORTHO05D004755 7.9e-56 220.7 170 71.2
Duzib211G0552 Durio zibethinus HOM05D004104 ORTHO05D004755 7.9e-56 220.7 157 75.8
CiPaw.01G185000 Carya illinoinensis HOM05D004104 ORTHO05D004755 1.8e-55 219.5 156 74.4
FvH4_2g21510 Fragaria vesca HOM05D005758 ORTHO05D007218 1.8e-55 219.5 197 59.9
Haze_11377 Corylus avellana HOM05D004104 ORTHO05D004755 9.6e-54 213.8 156 72.4
EL10Ac5g10403 Beta vulgaris HOM05D004104 ORTHO05D004755 1.3e-53 213.4 154 73.4
COL.COLO4_15874 Corchorus olitorius HOM05D004104 ORTHO05D004755 1.1e-52 210.3 155 74.8
Dinv27050 Davidia involucrata HOM05D004104 ORTHO05D004755 1.4e-52 209.9 156 72.4
AUR62011875 Chenopodium quinoa HOM05D004104 ORTHO05D004755 3.1e-52 208.8 154 72.1
Rhsim01G0264300 Rhododendron simsii HOM05D004104 ORTHO05D004755 3.1e-52 208.8 154 72.1
GSVIVG01027809001 Vitis vinifera HOM05D004104 ORTHO05D004755 3.1e-52 208.8 154 72.7
Atru.chr4.2063 Acer truncatum HOM05D004104 ORTHO05D004755 9.0e-52 207.2 157 70.7
Cc06_g07960 Coffea canephora HOM05D004104 ORTHO05D004755 1.5e-51 206.5 154 73.4
Nitab4.5_0000470g0160 Nicotiana tabacum HOM05D004104 ORTHO05D004755 4.5e-51 204.9 154 70.8
Nitab4.5_0009483g0030 Nicotiana tabacum HOM05D004104 ORTHO05D004755 5.8e-51 204.5 154 70.8
Sabra05G0172700 Salix brachista HOM05D004104 ORTHO05D004755 9.9e-51 203.8 221 54.8
Hund02913 Selenicereus undatus HOM05D004104 ORTHO05D004755 9.9e-51 203.8 159 70.4
Duzib052G0511 Durio zibethinus HOM05D004104 ORTHO05D004755 1.3e-50 203.4 156 71.2
Thecc.04G255000 Theobroma cacao HOM05D004104 ORTHO05D004755 1.3e-50 203.4 155 71.6
MSTRG.21496 Avicennia marina HOM05D004104 ORTHO05D004755 1.7e-50 203.0 153 71.9
PSO357G0016 Papaver somniferum HOM05D004104 ORTHO05D004755 1.7e-50 203.0 157 71.3
Solyc09g072580.3 Solanum lycopersicum HOM05D004104 ORTHO05D004755 1.7e-50 203.0 154 70.8
Sopen09g028390 Solanum pennellii HOM05D004104 ORTHO05D004755 1.7e-50 203.0 154 70.8
PGSC0003DMG400010299 Solanum tuberosum HOM05D004104 ORTHO05D004755 1.7e-50 203.0 154 70.8
Actinidia25786 Actinidia chinensis HOM05D004104 ORTHO05D004755 2.2e-50 202.6 155 71.6
Aqoxy2G03638 Aquilegia oxysepala HOM05D004104 ORTHO05D004755 2.2e-50 202.6 156 72.4
SalBow4G1878 Salvia bowleyana HOM05D004104 ORTHO05D004755 2.9e-50 202.2 153 70.6
Gohir.D02G045400 Gossypium hirsutum HOM05D004104 ORTHO05D004755 4.9e-50 201.4 156 69.9
Gorai.005G050100 Gossypium raimondii HOM05D004104 ORTHO05D004755 4.9e-50 201.4 156 69.9
PSO170G1063 Papaver somniferum HOM05D004104 ORTHO05D004755 6.4e-50 201.1 157 70.7
SGA_v2.0_scaffold1G00613 Striga asiatica HOM05D004104 ORTHO05D004755 1.4e-49 199.9 153 70.6
QL06p017873 Quercus lobata HOM05D004104 ORTHO05D004755 2.4e-49 199.1 156 70.5
SGA_v2.0_scaffold138G35232 Striga asiatica HOM05D000374 ORTHO05D000238 3.2e-49 198.7 153 69.9
Gohir.A02G039300 Gossypium hirsutum HOM05D004104 ORTHO05D004755 4.2e-49 198.4 156 69.2
Migut.D00423 Erythranthe guttata HOM05D004104 ORTHO05D004755 7.1e-49 197.6 153 69.9
COL.COLO4_05896 Corchorus olitorius HOM05D005758 ORTHO05D007218 9.3e-49 197.2 129 79.1
Duzib151G0362 Durio zibethinus HOM05D004104 ORTHO05D004755 9.3e-49 197.2 153 70.6
MSTRG.18320 Avicennia marina HOM05D004104 ORTHO05D004755 2.1e-48 196.1 153 69.9
arahy.Tifrunner.gnm1.ann1.2HR6HW Arachis hypogaea HOM05D004104 ORTHO05D004755 2.3e-47 192.6 183 62.3
Lsat_1_v5_gn_3_120420 Lactuca sativa HOM05D004104 ORTHO05D004755 3.9e-47 191.8 153 67.3
Aa31LG9G2930 Aethionema arabicum HOM05D004104 ORTHO05D004755 6.7e-47 191.0 155 66.5
HanXRQChr04g0112651 Helianthus annuus HOM05D004104 ORTHO05D004755 6.7e-47 191.0 154 66.9
Aqoxy2G03648 Aquilegia oxysepala HOM05D004104 ORTHO05D004755 8.7e-47 190.7 149 70.5
Ciclev10006103m.g Citrus clementina HOM05D004104 ORTHO05D004755 1.1e-46 190.3 154 66.2
HanXRQChr03g0091411 Helianthus annuus HOM05D004104 ORTHO05D004755 1.1e-46 190.3 155 65.8
TAR636G3439 Trochodendron aralioides HOM05D004104 ORTHO05D004755 1.1e-46 190.3 152 69.1
CSS0037223 Camellia sinensis var. sinensis HOM05D004104 ORTHO05D004755 3.3e-46 188.7 154 66.2
ECA240G4332 Erigeron canadensis HOM05D004104 ORTHO05D004755 3.3e-46 188.7 155 65.2
THA.LOC104822244 Tarenaya hassleriana HOM05D004104 ORTHO05D004755 3.3e-46 188.7 155 64.5
AT4G14385 Arabidopsis thaliana HOM05D004104 ORTHO05D004755 7.4e-46 187.6 155 66.5
A04p07650 Brassica napus HOM05D004104 ORTHO05D004755 7.4e-46 187.6 181 58.6
Nn3g19649 Nelumbo nucifera HOM05D004104 ORTHO05D004755 7.4e-46 187.6 122 78.7
Nitab4.5_0001005g0090 Nicotiana tabacum HOM05D004104 ORTHO05D004755 1.6e-45 186.4 154 67.5
Cc03_g05510 Coffea canephora HOM05D004104 ORTHO05D004755 2.8e-45 185.7 155 65.8
CDE04G2476 Ceratophyllum demersum HOM05D004104 ORTHO05D004755 3.7e-45 185.3 155 64.5
AL7G41830 Arabidopsis lyrata HOM05D004104 ORTHO05D004755 8.2e-45 184.1 154 66.2
SEGI_09266 Sequoiadendron giganteum HOM05D004104 ORTHO05D004755 8.2e-45 184.1 152 65.8
TAR365G1233 Trochodendron aralioides HOM05D004104 ORTHO05D004755 8.2e-45 184.1 151 67.5
Nitab4.5_0000044g0340 Nicotiana tabacum HOM05D004104 ORTHO05D004755 1.4e-44 183.3 154 66.9
Solyc09g090120.3 Solanum lycopersicum HOM05D004104 ORTHO05D004755 1.4e-44 183.3 154 66.2
Sopen09g033030 Solanum pennellii HOM05D004104 ORTHO05D004755 3.1e-44 182.2 154 66.2
unitig_0.g154 Utricularia gibba HOM05D003973 ORTHO05D004679 4.0e-44 181.8 154 66.9
Actinidia01846 Actinidia chinensis HOM05D004104 ORTHO05D004755 2.0e-43 179.5 154 64.9
MELO3C015732.2 Cucumis melo HOM05D004104 ORTHO05D004755 3.4e-43 178.7 268 46.3
Gohir.A07G212800 Gossypium hirsutum HOM05D004104 ORTHO05D004755 5.8e-43 177.9 156 64.7
Lsat_1_v5_gn_8_92980 Lactuca sativa HOM05D004104 ORTHO05D004755 5.8e-43 177.9 155 65.8
Rhsim02G0037300 Rhododendron simsii HOM05D004104 ORTHO05D004755 5.8e-43 177.9 156 60.9
SalBow3G2247 Salvia bowleyana HOM05D004104 ORTHO05D004755 6.5e-42 174.5 155 61.3
Os01g0233400 Oryza sativa ssp. japonica HOM05D004104 ORTHO05D004755 1.4e-41 173.3 143 68.5
Os12g0298600 Oryza sativa ssp. japonica HOM05D004104 ORTHO05D004755 1.4e-41 173.3 143 68.5
Manes.03G164300 Manihot esculenta HOM05D004104 ORTHO05D004755 5.5e-41 171.4 125 74.4
Gorai.001G253400 Gossypium raimondii HOM05D004104 ORTHO05D004755 7.1e-41 171.0 164 61.6
TWI18G1001 Tripterygium wilfordii HOM05D004104 ORTHO05D004755 1.6e-40 169.9 159 60.4
Migut.G00520 Erythranthe guttata HOM05D004104 ORTHO05D004755 2.7e-40 169.1 155 60.6
Hund11888 Selenicereus undatus HOM05D004104 ORTHO05D004755 2.7e-40 169.1 133 70.7
vmacro15441 Vaccinium macrocarpon HOM05D004104 ORTHO05D004755 3.9e-39 165.2 150 62.0
ECA236G2125 Erigeron canadensis HOM05D004104 ORTHO05D004755 5.1e-39 164.9 158 61.4
Lj1A66T60 Lonicera japonica HOM05D004104 ORTHO05D004755 5.1e-39 164.9 156 62.2
BcaC02g09319 Brassica carinata HOM05D004104 ORTHO05D004755 6.7e-39 164.5 151 60.3
C04p41340 Brassica napus HOM05D004104 ORTHO05D004755 6.7e-39 164.5 151 60.3
BolC4t25712H Brassica oleracea HOM05D004104 ORTHO05D004755 6.7e-39 164.5 115 72.2
BraA04t16456Z Brassica rapa HOM05D004104 ORTHO05D004755 6.7e-39 164.5 151 60.3
Thhalv10026437m.g Eutrema salsugineum HOM05D004104 ORTHO05D004755 2.2e-37 159.5 154 57.8
CARHR220610 Cardamine hirsuta HOM05D004104 ORTHO05D004755 4.8e-37 158.3 153 58.2
Manes.13G033700 Manihot esculenta HOM05D004104 ORTHO05D004755 4.8e-37 158.3 97 80.4
THA.LOC104825277 Tarenaya hassleriana HOM05D004104 ORTHO05D004755 8.2e-37 157.5 169 53.8
THA.LOC104825278 Tarenaya hassleriana HOM05D004104 ORTHO05D004755 8.2e-37 157.5 93 81.7
HPP92_004791 Vanilla planifolia HOM05D004104 ORTHO05D004755 1.1e-36 157.1 123 69.9
Carub.0007s2785 Capsella rubella HOM05D004104 ORTHO05D004755 1.4e-36 156.8 153 58.2
HPP92_008311 Vanilla planifolia HOM05D004104 ORTHO05D004755 1.4e-36 156.8 156 54.5
Ah.11g049720 Amaranthus hybridus HOM05D004104 ORTHO05D004755 3.1e-36 155.6 115 70.4
Mapoly0055s0054 Marchantia polymorpha HOM05D004104 ORTHO05D004755 3.1e-36 155.6 156 58.3
Peaxi162Scf00855g00233 Petunia axillaris HOM05D004104 ORTHO05D004755 3.1e-36 155.6 165 56.4
MSTRG.9892 Avicennia marina HOM05D004104 ORTHO05D004755 5.3e-36 154.8 141 61.0
BcaB02g08611 Brassica carinata HOM05D004104 ORTHO05D004755 9.0e-36 154.1 153 59.5
Sp7g12470 Schrenkiella parvula HOM05D004104 ORTHO05D004755 1.5e-35 153.3 152 57.9
Sc24g0003130 Simmondsia chinensis HOM05D004104 ORTHO05D004755 1.5e-35 153.3 93 81.7
unitig_21.g20174 Utricularia gibba HOM05D004104 ORTHO05D004755 3.4e-35 152.1 148 55.4
Gohir.D07G218900 Gossypium hirsutum HOM05D004104 ORTHO05D004755 5.9e-35 151.4 95 80.0
Pp3c8_15220 Physcomitrium patens HOM05D004104 ORTHO05D004755 6.5e-34 147.9 153 54.9
CBR_g31961 Chara braunii HOM05D004104 ORTHO05D004755 5.5e-33 144.8 149 54.4
Ah.13g072460 Amaranthus hybridus HOM05D004104 ORTHO05D004755 9.4e-33 144.1 119 67.2
Dinv29861 Davidia involucrata HOM05D004104 ORTHO05D004755 1.6e-32 143.3 96 74.0
AagrBONN_evm.TU.Sc2ySwM_228.2514 Anthoceros agrestis HOM05D004104 ORTHO05D004755 3.6e-32 142.1 143 57.3
AUR62002135 Chenopodium quinoa HOM05D004104 ORTHO05D004755 3.6e-32 142.1 179 50.8
SEGI_16929 Sequoiadendron giganteum HOM05D004104 ORTHO05D004755 1.0e-31 140.6 123 62.6
MBI10_g37181_MAGBIO Magnolia biondii HOM05D004104 ORTHO05D004755 2.3e-31 139.4 121 64.5
Pp3c24_15450 Physcomitrium patens HOM05D004104 ORTHO05D004755 2.3e-31 139.4 154 54.5
Oeu011497.1 Olea europaea HOM05D004104 ORTHO05D004755 5.1e-31 138.3 97 70.1
Duzib138G1233 Durio zibethinus HOM05D004104 ORTHO05D004755 1.5e-30 136.7 154 54.5
AagrBONN_evm.TU.Sc2ySwM_368.1944 Anthoceros agrestis HOM05D004104 ORTHO05D004755 2.0e-30 136.3 143 57.3
Dinv34620 Davidia involucrata HOM05D004104 ORTHO05D004755 7.4e-30 134.4 157 52.2
EL10Ac3g05008 Beta vulgaris HOM05D004104 ORTHO05D004755 8.2e-29 131.0 93 72.0
Actinidia32304 Actinidia chinensis HOM05D004104 ORTHO05D004755 1.8e-28 129.8 124 57.3
SGA_v2.0_scaffold67G22747 Striga asiatica HOM05D004104 ORTHO05D004755 1.8e-28 129.8 155 51.0
AUR62015575 Chenopodium quinoa HOM05D004104 ORTHO05D004755 6.9e-28 127.9 94 69.1
Ah.04g155820 Amaranthus hybridus HOM05D004104 ORTHO05D004755 6.5e-26 121.3 92 66.3
PGSC0003DMG400017224 Solanum tuberosum HOM05D004104 ORTHO05D004755 9.4e-25 117.5 167 47.9
Peaxi162Scf00543g00310 Petunia axillaris HOM05D004104 ORTHO05D004755 1.2e-24 117.1 148 52.7
CAN.G2012.3 Capsicum annuum HOM05D004104 ORTHO05D004755 3.1e-20 102.4 89 67.4
CAN.G896.9 Capsicum annuum HOM05D004104 ORTHO05D004755 4.5e-19 98.6 84 67.9
Thhalv10002280m.g Eutrema salsugineum HOM05D004104 ORTHO05D004755 1.3e-18 97.1 91 63.7
MCO10G151 Micromonas commoda HOM05D004104 ORTHO05D004755 5.0e-18 95.1 77 59.7
PRCOL_00002727 Prasinoderma coloniale HOM05D004104 ORTHO05D004755 7.2e-17 91.3 83 49.4
Thhalv10029502m.g Eutrema salsugineum HOM05D004104 ORTHO05D004755 4.7e-16 88.6 91 56.0
Zm00001eb188390 Zea mays HOM05D004104 ORTHO05D004755 1.1e-14 84.0 61 65.6
THA.LOC104825261 Tarenaya hassleriana HOM05D013951 ORTHO05D021024 2.4e-12 76.3 88 52.3
Gohir.D03G080833 Gossypium hirsutum HOM05D004104 ORTHO05D004755 3.1e-12 75.9 62 58.1
Actinidia11346 Actinidia chinensis HOM05D004104 ORTHO05D004755 4.1e-12 75.5 67 56.7
arahy.Tifrunner.gnm1.ann1.A8QM82 Arachis hypogaea HOM05D004104 ORTHO05D004755 1.2e-11 73.9 46 71.7
Gorai.003G083000 Gossypium raimondii HOM05D004104 ORTHO05D004755 1.2e-11 73.9 62 58.1
Cre06.g291200 Chlamydomonas reinhardtii HOM05D004104 ORTHO05D004755 2.1e-08 63.2 76 44.7
SHI09794 Sapria himalayana HOM05D004104 ORTHO05D004755 1.8e-07 60.1 41 68.3
Cre07.g328450 Chlamydomonas reinhardtii HOM05D004104 ORTHO05D004755 3.0e-07 59.3 76 40.8
Cc01_g11500 Coffea canephora HOM05D004104 ORTHO05D004755 6.7e-07 58.2 48 64.6
Aqoxy2G03647 Aquilegia oxysepala HOM05D004104 ORTHO05D004755 2.6e-06 56.2 87 46.0


User provided reference genes

Program Settings