Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR044G0410 Punica granatum HOM05D006778 ORTHO05D008341 2.1e-97 359.0 179 100.0
PGR044G1830 Punica granatum HOM05D006778 ORTHO05D008341 1.2e-55 220.3 132 84.1
Manes.12G043800 Manihot esculenta HOM05D006778 ORTHO05D008341 2.9e-30 136.0 127 54.3
Potri.002G252700 Populus trichocarpa HOM05D006778 ORTHO05D008341 6.5e-30 134.8 128 53.9
Glyma.10G042900 Glycine max HOM05D006778 ORTHO05D008341 1.5e-29 133.7 126 54.8
Sabra02G0191900 Salix brachista HOM05D006778 ORTHO05D008341 4.2e-29 132.1 128 53.1
Glyma.13G130200 Glycine max HOM05D006778 ORTHO05D008341 9.4e-29 131.0 123 54.5
Actinidia37573 Actinidia chinensis HOM05D006778 ORTHO05D008341 1.2e-28 130.6 127 53.5
FAN15G2222 Fragaria x ananassa HOM05D006778 ORTHO05D008341 2.1e-28 129.8 125 54.4
Lj3g0024250 Lotus japonicus HOM05D006778 ORTHO05D008341 4.7e-28 128.6 123 52.8
Prupe.8G209000 Prunus persica HOM05D006778 ORTHO05D008341 1.0e-27 127.5 128 53.9
TAR362G0656 Trochodendron aralioides HOM05D006778 ORTHO05D008341 1.0e-27 127.5 127 55.1
Cfa002523 Carpinus fangiana HOM05D006778 ORTHO05D008341 1.4e-27 127.1 122 52.5
Solyc06g008020.3 Solanum lycopersicum HOM05D006778 ORTHO05D008341 1.8e-27 126.7 130 47.7
GSVIVG01028519001 Vitis vinifera HOM05D006778 ORTHO05D008341 1.8e-27 126.7 129 51.9
CiPaw.03G152900 Carya illinoinensis HOM05D006778 ORTHO05D008341 5.2e-27 125.2 123 52.0
SGA_v2.0_scaffold8G04666 Striga asiatica HOM05D006778 ORTHO05D008341 5.2e-27 125.2 129 51.9
Rhsim13G0042100 Rhododendron simsii HOM05D006778 ORTHO05D008341 6.7e-27 124.8 123 54.5
FvH4_2g19780 Fragaria vesca HOM05D006778 ORTHO05D008341 1.5e-26 123.6 139 49.6
Cpa.g.sc8.198 Carica papaya HOM05D006778 ORTHO05D008341 2.0e-26 123.2 133 51.9
Sopen06g002860 Solanum pennellii HOM05D006778 ORTHO05D008341 5.7e-26 121.7 130 46.9
MD05G1182200 Malus domestica HOM05D006778 ORTHO05D008341 7.4e-26 121.3 128 52.3
Sed0012724 Sechium edule HOM05D006778 ORTHO05D008341 9.7e-26 120.9 128 46.1
Lj5g0022938 Lotus japonicus HOM05D006778 ORTHO05D008341 1.3e-25 120.6 126 50.0
CAN.G941.43 Capsicum annuum HOM05D006778 ORTHO05D008341 2.2e-25 119.8 129 47.3
Nitab4.5_0003180g0010 Nicotiana tabacum HOM05D006778 ORTHO05D008341 2.2e-25 119.8 130 46.9
DCAR_012626 Daucus carota HOM05D006778 ORTHO05D008341 2.8e-25 119.4 148 47.3
CiPaw.04G108200 Carya illinoinensis HOM05D006778 ORTHO05D008341 4.8e-25 118.6 154 43.5
Duzib133G1327 Durio zibethinus HOM05D006778 ORTHO05D008341 4.8e-25 118.6 171 45.0
RcHm_v2.0_Chr6g0285481 Rosa chinensis HOM05D006778 ORTHO05D008341 4.8e-25 118.6 136 48.5
THA.LOC104820057 Tarenaya hassleriana HOM05D006778 ORTHO05D008341 6.3e-25 118.2 133 47.4
Nitab4.5_0001740g0070 Nicotiana tabacum HOM05D006778 ORTHO05D008341 8.2e-25 117.9 130 50.0
Phvul.007G156300 Phaseolus vulgaris HOM05D006778 ORTHO05D008341 8.2e-25 117.9 126 49.2
Cc01_g17420 Coffea canephora HOM05D006778 ORTHO05D008341 1.1e-24 117.5 128 50.0
arahy.Tifrunner.gnm1.ann1.PE83GC Arachis hypogaea HOM05D006778 ORTHO05D008341 1.4e-24 117.1 123 48.0
FAN24G1005 Fragaria x ananassa HOM05D006778 ORTHO05D008341 1.4e-24 117.1 144 46.5
Migut.D00505 Erythranthe guttata HOM05D006778 ORTHO05D008341 1.8e-24 116.7 130 46.9
Thecc.01G232400 Theobroma cacao HOM05D006778 ORTHO05D008341 1.8e-24 116.7 172 43.6
ClCG07G001620 Citrullus lanatus HOM05D006778 ORTHO05D008341 3.1e-24 115.9 130 46.2
MELO3C026499.2 Cucumis melo HOM05D006778 ORTHO05D008341 3.1e-24 115.9 128 47.7
Psat6g064720 Pisum sativum HOM05D006778 ORTHO05D008341 4.1e-24 115.5 141 46.8
CsaV3_6G036140 Cucumis sativus L. HOM05D006778 ORTHO05D008341 5.3e-24 115.2 128 47.7
vmacro02733 Vaccinium macrocarpon HOM05D006778 ORTHO05D008341 5.3e-24 115.2 156 46.2
arahy.Tifrunner.gnm1.ann1.01AYHN Arachis hypogaea HOM05D006778 ORTHO05D008341 9.1e-24 114.4 123 47.2
Medtr1g069150 Medicago truncatula HOM05D006778 ORTHO05D008341 1.2e-23 114.0 142 46.5
ATR0787G018 Amborella trichopoda HOM05D006778 ORTHO05D008341 1.6e-23 113.6 141 43.3
Lalb_Chr21g0314231 Lupinus albus HOM05D006778 ORTHO05D008341 1.6e-23 113.6 131 47.3
EL10Ac7g17819 Beta vulgaris HOM05D006778 ORTHO05D008341 4.5e-23 112.1 138 45.7
Nn1g03098 Nelumbo nucifera HOM05D006778 ORTHO05D008341 4.5e-23 112.1 144 45.8
Gohir.D08G211201 Gossypium hirsutum HOM05D006778 ORTHO05D008341 7.7e-23 111.3 158 44.3
ECA247G0226 Erigeron canadensis HOM05D000070 ORTHO05D003190 1.0e-22 110.9 132 45.5
QL07p037469 Quercus lobata HOM05D006778 ORTHO05D008341 2.2e-22 109.8 158 42.4
Aqoxy2G03836 Aquilegia oxysepala HOM05D006778 ORTHO05D008341 3.8e-22 109.0 122 48.4
CANSAT01G2408 Cannabis sativa HOM05D006778 ORTHO05D008341 3.8e-22 109.0 152 41.4
CANSAT01G3118 Cannabis sativa HOM05D006778 ORTHO05D008341 3.8e-22 109.0 152 41.4
COL.COLO4_28579 Corchorus olitorius HOM05D006778 ORTHO05D008341 3.8e-22 109.0 158 46.2
Gohir.A08G193200 Gossypium hirsutum HOM05D006778 ORTHO05D008341 1.1e-21 107.5 167 41.9
Gorai.004G223900 Gossypium raimondii HOM05D006778 ORTHO05D008341 1.9e-21 106.7 172 42.4
AUR62031811 Chenopodium quinoa HOM05D006778 ORTHO05D008341 2.5e-21 106.3 159 42.8
TPR.G33801 Trifolium pratense HOM05D006778 ORTHO05D008341 4.2e-21 105.5 140 43.6
Pp3c19_5220 Physcomitrium patens HOM05D006778 ORTHO05D008341 1.2e-20 104.0 128 44.5
BcaC09g51658 Brassica carinata HOM05D006778 ORTHO05D008341 1.0e-19 100.9 155 39.4
BcaNung01362 Brassica carinata HOM05D006778 ORTHO05D008341 3.0e-19 99.4 155 40.0
Sp7g26820 Schrenkiella parvula HOM05D006778 ORTHO05D008341 5.2e-19 98.6 151 40.4
HPP92_014070 Vanilla planifolia HOM05D006778 ORTHO05D008341 8.8e-19 97.8 132 43.9
Thhalv10026155m.g Eutrema salsugineum HOM05D006778 ORTHO05D008341 1.5e-18 97.1 161 37.9
Mapoly0102s0014 Marchantia polymorpha HOM05D006778 ORTHO05D008341 5.7e-18 95.1 135 37.8
Carub.0007s1182 Capsella rubella HOM05D006778 ORTHO05D008341 7.5e-18 94.7 162 38.3
CBR_g29688 Chara braunii HOM05D006778 ORTHO05D008341 1.7e-17 93.6 124 44.4
CDE06G1811 Ceratophyllum demersum HOM05D006778 ORTHO05D008341 2.8e-17 92.8 141 37.6
PGSC0003DMG400014691 Solanum tuberosum HOM05D006778 ORTHO05D008341 1.1e-16 90.9 107 44.9
CARHR236610 Cardamine hirsuta HOM05D006778 ORTHO05D008341 1.4e-16 90.5 160 36.2
AT4G28820 Arabidopsis thaliana HOM05D006778 ORTHO05D008341 4.1e-16 89.0 158 36.1
Haze_24755 Corylus avellana HOM05D006778 ORTHO05D008341 5.4e-16 88.6 88 48.9
Dinv19236 Davidia involucrata HOM05D006778 ORTHO05D008341 9.1e-16 87.8 132 39.4
SMO111G0074 Selaginella moellendorffii HOM05D006778 ORTHO05D008341 1.2e-15 87.4 135 40.0
Haze_24757 Corylus avellana HOM05D006778 ORTHO05D008341 1.6e-15 87.0 104 43.3
CDE07G0370 Ceratophyllum demersum HOM05D006778 ORTHO05D008341 2.7e-15 86.3 122 40.2
A01p09090 Brassica napus HOM05D006778 ORTHO05D008341 7.7e-15 84.7 166 34.9
Zm00001eb149030 Zea mays HOM05D006778 ORTHO05D008341 1.0e-14 84.3 122 41.0
BolC1t01026H Brassica oleracea HOM05D006778 ORTHO05D008341 8.5e-14 81.3 166 34.9
C01p10640 Brassica napus HOM05D006778 ORTHO05D008341 5.5e-13 78.6 167 34.1
AUR62008897 Chenopodium quinoa HOM05D006778 ORTHO05D008341 7.2e-13 78.2 138 39.9
AL7G23670 Arabidopsis lyrata HOM05D006778 ORTHO05D008341 9.4e-13 77.8 190 32.1
CSS0042066 Camellia sinensis var. sinensis HOM05D006778 ORTHO05D008341 9.4e-13 77.8 137 36.5
AagrBONN_evm.TU.Sc2ySwM_228.3325 Anthoceros agrestis HOM05D006778 ORTHO05D008341 1.6e-12 77.0 140 35.7
Atru.chr5.1931 Acer truncatum HOM05D006778 ORTHO05D008341 6.1e-12 75.1 99 45.5
Peaxi162Scf00499g00413 Petunia axillaris HOM05D006778 ORTHO05D008341 6.1e-12 75.1 101 43.6
Actinidia30101 Actinidia chinensis HOM05D006778 ORTHO05D008341 8.0e-12 74.7 73 54.8
Lsat_1_v5_gn_9_11140 Lactuca sativa HOM05D006778 ORTHO05D008341 8.0e-12 74.7 96 45.8
Sc17g0002480 Simmondsia chinensis HOM05D006778 ORTHO05D008341 8.0e-12 74.7 101 45.5
BraA01t00857Z Brassica rapa HOM05D006778 ORTHO05D008341 1.4e-11 73.9 164 32.9
Hund05528 Selenicereus undatus HOM05D006778 ORTHO05D008341 8.8e-11 71.2 120 40.8
TWI14G0487 Tripterygium wilfordii HOM05D006778 ORTHO05D008341 1.5e-10 70.5 181 31.5
MSTRG.18371 Avicennia marina HOM05D006778 ORTHO05D008341 5.7e-10 68.6 129 34.1
BolC7t46124H Brassica oleracea HOM05D006778 ORTHO05D008341 5.7e-10 68.6 199 27.6
MCO09G744 Micromonas commoda HOM05D004020 ORTHO05D004735 2.2e-09 66.6 139 34.5
C07p56450 Brassica napus HOM05D006778 ORTHO05D008341 4.9e-09 65.5 199 27.1
Hma1.2p1_1858F.1_g305520 Hydrangea macrophylla HOM05D006778 ORTHO05D008341 4.9e-09 65.5 41 63.4
MD10G1170500 Malus domestica HOM05D006778 ORTHO05D008341 4.9e-09 65.5 127 35.4
A03p58430 Brassica napus HOM05D006778 ORTHO05D008341 1.1e-08 64.3 192 28.1
Aa31LG2G21570 Aethionema arabicum HOM05D006778 ORTHO05D008341 1.4e-08 63.9 158 31.0
VMungo0720G2677 Vigna mungo HOM05D006778 ORTHO05D008341 1.8e-08 63.5 110 37.3
AagrBONN_evm.TU.Sc2ySwM_368.1574 Anthoceros agrestis HOM05D006778 ORTHO05D008341 5.4e-08 62.0 110 36.4
Sed0026958 Sechium edule HOM05D006778 ORTHO05D008341 1.0e-06 57.8 71 43.7
Ca_09622_v3 Cicer arietinum L. HOM05D006778 ORTHO05D008341 5.0e-06 55.5 108 36.1
PSO017G3634 Papaver somniferum HOM05D006778 ORTHO05D008341 5.0e-06 55.5 116 32.8
SEGI_27672 Sequoiadendron giganteum HOM05D006778 ORTHO05D008341 5.0e-06 55.5 47 61.7
Gohir.D08G007200 Gossypium hirsutum HOM05D006778 ORTHO05D008341 8.6e-06 54.7 71 49.3
MBI11_g20194_MAGBIO Magnolia biondii HOM05D006778 ORTHO05D008341 8.6e-06 54.7 46 58.7


User provided reference genes

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