Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR044G0382 Punica granatum HOM05D004491 ORTHO05D006742 7.0e-237 823.5 414 100.0
Haze_04798 Corylus avellana HOM05D004491 ORTHO05D006742 6.7e-195 684.1 414 81.9
Eucgr.K03426 Eucalyptus grandis HOM05D004491 ORTHO05D006742 8.7e-195 683.7 415 83.6
Prupe.8G251000 Prunus persica HOM05D004491 ORTHO05D006742 4.3e-194 681.4 415 81.2
Cfa006054 Carpinus fangiana HOM05D004491 ORTHO05D006742 6.2e-193 677.6 414 81.2
FAN20G1381 Fragaria x ananassa HOM05D004491 ORTHO05D006742 1.1e-192 676.8 414 80.4
FAN15G2832 Fragaria x ananassa HOM05D004491 ORTHO05D006742 4.0e-192 674.9 414 80.2
FvH4_2g24580 Fragaria vesca HOM05D004491 ORTHO05D006742 5.3e-192 674.5 414 80.2
FAN27G1423 Fragaria x ananassa HOM05D004491 ORTHO05D006742 6.9e-192 674.1 414 79.7
FAN24G0196 Fragaria x ananassa HOM05D004491 ORTHO05D006742 1.2e-191 673.3 414 80.2
MD03G1274300 Malus domestica HOM05D004491 ORTHO05D006742 2.6e-191 672.2 413 79.4
CiPaw.07G098600 Carya illinoinensis HOM05D004491 ORTHO05D006742 1.3e-190 669.8 412 79.1
RcHm_v2.0_Chr6g0292401 Rosa chinensis HOM05D004491 ORTHO05D006742 3.8e-190 668.3 414 79.2
ClCG01G000050 Citrullus lanatus HOM05D004491 ORTHO05D006742 4.9e-190 667.9 414 79.0
CANSAT25G3440 Cannabis sativa HOM05D004491 ORTHO05D006742 8.4e-190 667.2 413 79.9
MELO3C005918.2 Cucumis melo HOM05D004491 ORTHO05D006742 7.1e-189 664.1 414 79.0
MD11G1296800 Malus domestica HOM05D004491 ORTHO05D006742 7.9e-188 660.6 415 78.3
CsaV3_5G000130 Cucumis sativus L. HOM05D004491 ORTHO05D006742 2.3e-187 659.1 414 78.7
VMungo1383G0326 Vigna mungo HOM05D004491 ORTHO05D006742 3.9e-187 658.3 415 79.0
Phvul.001G201100 Phaseolus vulgaris HOM05D004491 ORTHO05D006742 5.1e-187 657.9 415 79.3
Actinidia24287 Actinidia chinensis HOM05D004491 ORTHO05D006742 1.9e-186 656.0 414 77.8
Glyma.03G207900 Glycine max HOM05D004491 ORTHO05D006742 1.1e-184 650.2 416 78.6
Glyma.19G205200 Glycine max HOM05D004491 ORTHO05D006742 1.8e-184 649.4 416 79.1
Hma1.2p1_0209F.1_g089210 Hydrangea macrophylla HOM05D004491 ORTHO05D006742 5.3e-184 647.9 413 77.2
SGA_v2.0_scaffold44G16642 Striga asiatica HOM05D004491 ORTHO05D006742 5.3e-184 647.9 415 77.6
PGSC0003DMG400024040 Solanum tuberosum HOM05D004491 ORTHO05D006742 9.0e-184 647.1 414 77.1
QL12p023667 Quercus lobata HOM05D004491 ORTHO05D006742 2.0e-183 646.0 413 77.7
Cc01_g20110 Coffea canephora HOM05D004491 ORTHO05D006742 7.6e-183 644.0 415 77.8
Lalb_Chr25g0287571 Lupinus albus HOM05D004491 ORTHO05D006742 7.6e-183 644.0 418 77.3
CSS0018382 Camellia sinensis var. sinensis HOM05D004491 ORTHO05D006742 1.0e-182 643.7 414 76.8
Nitab4.5_0003831g0010 Nicotiana tabacum HOM05D004491 ORTHO05D006742 2.2e-182 642.5 415 76.1
SalBow3G0026 Salvia bowleyana HOM05D004491 ORTHO05D006742 2.2e-182 642.5 414 76.8
Sed0015582 Sechium edule HOM05D004491 ORTHO05D006742 2.9e-182 642.1 414 76.3
Sed0005784 Sechium edule HOM05D004491 ORTHO05D006742 5.0e-182 641.3 414 76.1
Migut.F00598 Erythranthe guttata HOM05D004491 ORTHO05D006742 1.9e-181 639.4 414 76.6
Lalb_Chr20g0111001 Lupinus albus HOM05D004491 ORTHO05D006742 1.9e-181 639.4 419 76.8
Ca_09104_v3 Cicer arietinum L. HOM05D004491 ORTHO05D006742 4.2e-181 638.3 417 77.9
Nitab4.5_0002093g0130 Nicotiana tabacum HOM05D004491 ORTHO05D006742 5.5e-181 637.9 415 75.7
Sabra14G0101900 Salix brachista HOM05D004491 ORTHO05D006742 5.5e-181 637.9 414 76.3
Potri.014G135590 Populus trichocarpa HOM05D004491 ORTHO05D006742 7.2e-181 637.5 414 76.6
Manes.05G069700 Manihot esculenta HOM05D004491 ORTHO05D006742 1.6e-180 636.3 414 77.5
arahy.Tifrunner.gnm1.ann1.16527J Arachis hypogaea HOM05D004491 ORTHO05D006742 2.1e-180 636.0 417 77.0
Lsat_1_v5_gn_5_189841 Lactuca sativa HOM05D004491 ORTHO05D006742 2.1e-180 636.0 414 74.4
MSTRG.27268 Avicennia marina HOM05D004491 ORTHO05D006742 2.7e-180 635.6 412 76.7
Sopen06g035830 Solanum pennellii HOM05D004491 ORTHO05D006742 2.7e-180 635.6 414 75.6
arahy.Tifrunner.gnm1.ann1.5A22SW Arachis hypogaea HOM05D004491 ORTHO05D006742 3.5e-180 635.2 417 76.7
Solyc06g084440.3 Solanum lycopersicum HOM05D004491 ORTHO05D006742 3.5e-180 635.2 414 75.6
Aqoxy5G00601 Aquilegia oxysepala HOM05D004491 ORTHO05D006742 1.0e-179 633.6 414 75.4
TAR636G1438 Trochodendron aralioides HOM05D004491 ORTHO05D006742 5.1e-179 631.3 412 74.8
Medtr7g107480 Medicago truncatula HOM05D004491 ORTHO05D006742 1.1e-178 630.2 417 76.0
vmacro09158 Vaccinium macrocarpon HOM05D004491 ORTHO05D006742 1.1e-178 630.2 414 75.6
DCAR_012436 Daucus carota HOM05D004491 ORTHO05D006742 1.5e-178 629.8 416 74.8
Peaxi162Scf01039g00225 Petunia axillaris HOM05D004491 ORTHO05D006742 1.9e-178 629.4 414 74.6
TWI23G1267 Tripterygium wilfordii HOM05D004491 ORTHO05D006742 2.5e-178 629.0 414 75.1
Potri.002G213600 Populus trichocarpa HOM05D004491 ORTHO05D006742 3.3e-178 628.6 412 75.5
Cpa.g.sc9.150 Carica papaya HOM05D004491 ORTHO05D006742 4.3e-178 628.2 412 75.7
Psat3g025480 Pisum sativum HOM05D004491 ORTHO05D006742 2.2e-177 625.9 417 76.0
Lj1g0004162 Lotus japonicus HOM05D004491 ORTHO05D006742 2.8e-177 625.5 417 75.8
SGA_v2.0_scaffold60G20898 Striga asiatica HOM05D004491 ORTHO05D006742 2.8e-177 625.5 447 72.0
Sabra02G0149400 Salix brachista HOM05D004491 ORTHO05D006742 5.3e-176 621.3 412 74.8
Atru.chr5.1296 Acer truncatum HOM05D004491 ORTHO05D006742 2.0e-175 619.4 414 73.9
Nn3g21241 Nelumbo nucifera HOM05D004491 ORTHO05D006742 2.6e-175 619.0 415 74.9
unitig_37.g12470 Utricularia gibba HOM05D004491 ORTHO05D006742 2.6e-175 619.0 415 74.0
Ciclev10011862m.g Citrus clementina HOM05D004491 ORTHO05D006742 3.4e-175 618.6 412 75.0
Rhsim13G0018200 Rhododendron simsii HOM05D004491 ORTHO05D006742 3.4e-175 618.6 417 74.6
Oeu022805.1 Olea europaea HOM05D004491 ORTHO05D006742 1.0e-174 617.1 457 69.6
Ah.02g115120 Amaranthus hybridus HOM05D004491 ORTHO05D006742 1.3e-174 616.7 418 73.2
MSTRG.8371 Avicennia marina HOM05D004491 ORTHO05D006742 2.2e-174 615.9 414 74.6
Hund18024 Selenicereus undatus HOM05D004491 ORTHO05D006742 2.2e-174 615.9 417 71.7
ECA248G1403 Erigeron canadensis HOM05D004491 ORTHO05D006742 1.1e-173 613.6 415 73.3
CSS0045203 Camellia sinensis var. sinensis HOM05D004491 ORTHO05D006742 2.5e-173 612.5 413 73.6
HanXRQChr11g0334841 Helianthus annuus HOM05D004491 ORTHO05D006742 3.2e-173 612.1 414 72.7
TWI14G1187 Tripterygium wilfordii HOM05D004491 ORTHO05D006742 4.2e-173 611.7 414 73.2
AUR62043003 Chenopodium quinoa HOM05D004491 ORTHO05D006742 7.9e-172 607.4 417 72.4
Thecc.01G288700 Theobroma cacao HOM05D004491 ORTHO05D006742 1.0e-171 607.1 414 72.9
Gorai.008G007400 Gossypium raimondii HOM05D004491 ORTHO05D006742 8.8e-171 604.0 414 72.5
TPR.G32310 Trifolium pratense HOM05D004491 ORTHO05D006742 1.1e-170 603.6 405 75.8
Duzib211G0578 Durio zibethinus HOM05D004491 ORTHO05D006742 1.5e-170 603.2 415 72.8
BcaB02g08082 Brassica carinata HOM05D004491 ORTHO05D006742 2.5e-170 602.4 412 72.1
Carub.0005s2965 Capsella rubella HOM05D004491 ORTHO05D006742 2.5e-170 602.4 413 71.2
CDE01G0135 Ceratophyllum demersum HOM05D004491 ORTHO05D006742 5.7e-170 601.3 414 71.7
PSO407G0423 Papaver somniferum HOM05D004491 ORTHO05D006742 7.4e-170 600.9 416 71.2
BcaC02g10333 Brassica carinata HOM05D004491 ORTHO05D006742 9.7e-170 600.5 412 71.1
C04p30230 Brassica napus HOM05D004491 ORTHO05D006742 9.7e-170 600.5 412 71.1
BolC4t24555H Brassica oleracea HOM05D004491 ORTHO05D006742 9.7e-170 600.5 412 71.1
PSO170G1317 Papaver somniferum HOM05D004491 ORTHO05D006742 9.7e-170 600.5 416 70.9
Sp5g00520 Schrenkiella parvula HOM05D004491 ORTHO05D006742 9.7e-170 600.5 414 71.3
Gohir.A12G007800 Gossypium hirsutum HOM05D004491 ORTHO05D006742 1.3e-169 600.1 414 71.7
Aa31LG1G29390 Aethionema arabicum HOM05D004491 ORTHO05D006742 1.7e-169 599.7 412 70.9
MBI19_g09851_MAGBIO Magnolia biondii HOM05D004491 ORTHO05D006742 4.8e-169 598.2 420 72.4
AT3G63000 Arabidopsis thaliana HOM05D004491 ORTHO05D006742 8.2e-169 597.4 413 70.9
A04p00390 Brassica napus HOM05D004491 ORTHO05D006742 8.2e-169 597.4 412 70.9
BraA04t15757Z Brassica rapa HOM05D004491 ORTHO05D006742 8.2e-169 597.4 412 70.9
Gorai.004G139800 Gossypium raimondii HOM05D004491 ORTHO05D006742 8.2e-169 597.4 415 72.5
THA.LOC104817536 Tarenaya hassleriana HOM05D004491 ORTHO05D006742 8.2e-169 597.4 415 71.3
Aa31LG10G16820 Aethionema arabicum HOM05D004491 ORTHO05D006742 1.1e-168 597.0 414 71.7
ATR0706G070 Amborella trichopoda HOM05D004491 ORTHO05D006742 1.1e-168 597.0 412 70.6
AL5G45780 Arabidopsis lyrata HOM05D004491 ORTHO05D006742 1.1e-168 597.0 411 71.0
CARHR173290 Cardamine hirsuta HOM05D004491 ORTHO05D006742 1.1e-168 597.0 413 71.4
Thhalv10001466m.g Eutrema salsugineum HOM05D004491 ORTHO05D006742 1.1e-168 597.0 412 70.6
Gohir.D12G007200 Gossypium hirsutum HOM05D004491 ORTHO05D006742 1.1e-168 597.0 414 71.5
SEGI_03905 Sequoiadendron giganteum HOM05D004491 ORTHO05D006742 1.4e-168 596.7 415 71.3
vmacro09175 Vaccinium macrocarpon HOM05D004491 ORTHO05D006742 1.4e-168 596.7 481 64.7
Gohir.D08G136600 Gossypium hirsutum HOM05D004491 ORTHO05D006742 1.8e-168 596.3 415 72.5
CDE12G0180 Ceratophyllum demersum HOM05D004491 ORTHO05D006742 3.1e-168 595.5 414 70.0
Gohir.A08G115800 Gossypium hirsutum HOM05D004491 ORTHO05D006742 1.2e-167 593.6 414 71.5
Dinv32984 Davidia involucrata HOM05D004682 ORTHO05D006197 1.4e-165 586.6 377 76.7
AT2G47970 Arabidopsis thaliana HOM05D004491 ORTHO05D006742 1.9e-165 586.3 413 70.5
Sp4g29890 Schrenkiella parvula HOM05D004491 ORTHO05D006742 3.2e-165 585.5 413 70.2
EL10Ac5g11643 Beta vulgaris HOM05D004491 ORTHO05D006742 5.5e-165 584.7 467 64.7
TAR365G0641 Trochodendron aralioides HOM05D004491 ORTHO05D006742 3.6e-164 582.0 412 69.9
AL4G47560 Arabidopsis lyrata HOM05D004491 ORTHO05D006742 4.7e-164 581.6 413 69.5
Lj1C40T6 Lonicera japonica HOM05D004491 ORTHO05D006742 2.2e-161 572.8 510 61.0
HPP92_001332 Vanilla planifolia HOM05D004491 ORTHO05D006742 1.8e-152 543.1 420 65.5
SHI15482 Sapria himalayana HOM05D004491 ORTHO05D006742 9.1e-152 540.8 431 64.7
COL.COLO4_08043 Corchorus olitorius HOM05D004491 ORTHO05D006742 1.1e-149 533.9 351 74.9
Mapoly0023s0134 Marchantia polymorpha HOM05D004491 ORTHO05D006742 3.2e-149 532.3 412 65.0
AagrBONN_evm.TU.Sc2ySwM_228.2306 Anthoceros agrestis HOM05D004491 ORTHO05D006742 2.5e-141 506.1 412 60.7
CAN.G1209.44 Capsicum annuum HOM05D004491 ORTHO05D006742 1.2e-140 503.8 307 80.1
Sc05g0004670 Simmondsia chinensis HOM05D004491 ORTHO05D006742 1.8e-139 500.0 333 75.1
Duzib133G1404 Durio zibethinus HOM05D004491 ORTHO05D006742 2.6e-138 496.1 330 73.6
Pp3c4_25410 Physcomitrium patens HOM05D004491 ORTHO05D006742 4.1e-136 488.8 412 58.0
CSS0029376 Camellia sinensis var. sinensis HOM05D004491 ORTHO05D006742 5.6e-133 478.4 350 70.0
AUR62034024 Chenopodium quinoa HOM05D004491 ORTHO05D006742 3.6e-132 475.7 334 71.6
Os01g0377700 Oryza sativa ssp. japonica HOM05D004491 ORTHO05D006742 1.0e-131 474.2 420 60.5
SMO011G0024 Selaginella moellendorffii HOM05D004491 ORTHO05D006742 1.4e-128 463.8 412 57.5
Zm00001eb366640 Zea mays HOM05D004491 ORTHO05D006742 2.5e-125 453.0 422 57.1
Zm00001eb146560 Zea mays HOM05D004491 ORTHO05D006742 8.9e-123 444.5 422 55.5
THA.LOC104820469 Tarenaya hassleriana HOM05D004491 ORTHO05D006742 3.1e-107 392.9 235 81.7
PSO384G1012 Papaver somniferum HOM05D004491 ORTHO05D006742 5.6e-101 372.1 244 73.0
PRCOL_00001630 Prasinoderma coloniale HOM05D004491 ORTHO05D006742 5.4e-88 328.9 432 45.4
THA.LOC104799698 Tarenaya hassleriana HOM05D004491 ORTHO05D006742 2.0e-74 283.9 182 76.4
MCO03G089 Micromonas commoda HOM05D004491 ORTHO05D006742 1.9e-72 277.3 391 42.5
Duzib147G1201 Durio zibethinus HOM05D004491 ORTHO05D006742 1.3e-68 264.6 239 59.4
Cre06.g293051 Chlamydomonas reinhardtii HOM05D000780 ORTHO05D001132 9.3e-64 248.4 329 43.8
Aa31sc35G70 Aethionema arabicum HOM05D004491 ORTHO05D006742 3.3e-53 213.4 182 63.2
GSVIVG01011019001 Vitis vinifera HOM05D004491 ORTHO05D006742 1.3e-44 184.9 113 80.5
Actinidia00704 Actinidia chinensis HOM05D004491 ORTHO05D019493 1.4e-43 181.4 242 46.7
Zm00001eb098320 Zea mays HOM05D004491 ORTHO05D006742 8.2e-36 155.6 154 50.6
BcaB02g07304 Brassica carinata HOM05D004491 ORTHO05D091651 1.1e-32 145.2 131 58.0
AUR62034023 Chenopodium quinoa HOM05D004491 ORTHO05D019493 1.2e-29 135.2 86 73.3
Sopen08g018880 Solanum pennellii HOM05D004491 ORTHO05D006742 5.7e-29 132.9 81 76.5
SEGI_06416 Sequoiadendron giganteum HOM05D004491 ORTHO05D019493 2.4e-27 127.5 84 69.0
C08p37710 Brassica napus HOM05D004491 ORTHO05D031847 1.8e-22 111.3 86 64.0
BolC8t51354H Brassica oleracea HOM05D004491 ORTHO05D031847 1.8e-22 111.3 86 64.0
Actinidia28542 Actinidia chinensis HOM05D004491 ORTHO05D057841 2.0e-21 107.8 186 43.5
Gohir.A11G248600 Gossypium hirsutum HOM05D004491 ORTHO05D019493 3.4e-21 107.1 90 58.9
BcaC07g40782 Brassica carinata HOM05D004491 ORTHO05D031847 5.7e-21 106.3 96 59.4
Gohir.A04G054626 Gossypium hirsutum HOM05D004491 ORTHO05D019493 1.8e-19 101.3 84 59.5
BcaC08g45254 Brassica carinata HOM05D004491 ORTHO05D032214 3.1e-19 100.5 73 63.0
BolC6t38019H Brassica oleracea HOM05D004491 ORTHO05D032214 3.1e-19 100.5 73 63.0
C06p28510 Brassica napus HOM05D004491 ORTHO05D032214 2.0e-18 97.8 73 61.6
HPP92_013688 Vanilla planifolia HOM05D004491 ORTHO05D006742 5.9e-18 96.3 82 58.5
SHI00898 Sapria himalayana HOM05D004491 ORTHO05D019493 5.0e-17 93.2 73 60.3
SHI19086 Sapria himalayana HOM05D004491 ORTHO05D019493 3.4e-13 80.5 59 62.7
BcaC07g42722 Brassica carinata HOM05D004491 ORTHO05D095981 2.2e-12 77.8 66 56.1
CAN.G1682.2 Capsicum annuum HOM05D011687 ORTHO05D014163 2.0e-10 71.2 86 48.8
BcaC07g42719 Brassica carinata HOM05D004491 ORTHO05D094938 5.9e-10 69.7 65 50.8
BolC6t38020H Brassica oleracea HOM05D004491 ORTHO05D040597 1.7e-09 68.2 113 39.8
C06p28520 Brassica napus HOM05D004491 ORTHO05D040597 2.3e-09 67.8 113 38.9


User provided reference genes

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