Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR044G0267 Punica granatum HOM05D004813 ORTHO05D005889 5.4e-88 328.2 241 100.0
PGR044G0958 Punica granatum HOM05D004813 ORTHO05D005889 6.8e-83 311.2 213 97.7
Eucgr.K02829 Eucalyptus grandis HOM05D004813 ORTHO05D005889 6.4e-65 251.5 148 85.1
Potri.012G082600 Populus trichocarpa HOM05D004813 ORTHO05D005889 1.7e-62 243.4 213 65.3
CSS0009747 Camellia sinensis var. sinensis HOM05D004813 ORTHO05D005889 1.5e-61 240.4 148 81.8
CSS0044871 Camellia sinensis var. sinensis HOM05D004813 ORTHO05D005889 1.5e-61 240.4 148 81.8
Ciclev10019513m.g Citrus clementina HOM05D004813 ORTHO05D005889 2.5e-61 239.6 148 79.1
Nitab4.5_0000514g0060 Nicotiana tabacum HOM05D004813 ORTHO05D005889 6.2e-60 235.0 148 81.1
Cpa.g.sc76.31 Carica papaya HOM05D004813 ORTHO05D005889 1.1e-59 234.2 212 61.3
Dinv20637 Davidia involucrata HOM05D004813 ORTHO05D005889 1.1e-59 234.2 215 61.9
Nn4g22713 Nelumbo nucifera HOM05D004813 ORTHO05D005889 1.1e-59 234.2 148 80.4
MBI16_g37492_MAGBIO Magnolia biondii HOM05D004813 ORTHO05D005889 1.4e-59 233.8 147 80.3
MBI16_g39216_MAGBIO Magnolia biondii HOM05D004813 ORTHO05D005889 1.4e-59 233.8 147 80.3
Atru.chr8.1447 Acer truncatum HOM05D004813 ORTHO05D005889 1.8e-59 233.4 222 71.6
Potri.015G078500 Populus trichocarpa HOM05D004813 ORTHO05D005889 1.8e-59 233.4 147 77.6
Sabra15G0103000 Salix brachista HOM05D004813 ORTHO05D005889 3.1e-59 232.6 213 70.9
MBI17_g17505_MAGBIO Magnolia biondii HOM05D004813 ORTHO05D005889 5.3e-59 231.9 147 80.3
Peaxi162Scf00089g01844 Petunia axillaris HOM05D004813 ORTHO05D005889 1.2e-58 230.7 148 79.1
Cc04_g12130 Coffea canephora HOM05D004813 ORTHO05D005889 1.5e-58 230.3 147 78.9
TAR629G2765 Trochodendron aralioides HOM05D004813 ORTHO05D005889 1.5e-58 230.3 215 60.5
CiPaw.11G024600 Carya illinoinensis HOM05D004813 ORTHO05D005889 4.5e-58 228.8 213 59.6
Atru.chr9.2495 Acer truncatum HOM05D004813 ORTHO05D005889 9.9e-58 227.6 148 75.7
Manes.14G064300 Manihot esculenta HOM05D004813 ORTHO05D005889 9.9e-58 227.6 147 74.1
MELO3C026213.2 Cucumis melo HOM05D004813 ORTHO05D005889 1.7e-57 226.9 215 57.7
Solyc03g112820.4 Solanum lycopersicum HOM05D004813 ORTHO05D005889 1.7e-57 226.9 213 59.2
Sopen03g031900 Solanum pennellii HOM05D004813 ORTHO05D005889 1.7e-57 226.9 213 59.2
Cfa019150 Carpinus fangiana HOM05D004813 ORTHO05D005889 2.9e-57 226.1 210 59.5
CDE05G0644 Ceratophyllum demersum HOM05D004813 ORTHO05D005889 8.4e-57 224.6 147 76.9
BcaNung05723 Brassica carinata HOM05D004813 ORTHO05D005889 1.4e-56 223.8 212 58.0
Lj4g0001275 Lotus japonicus HOM05D004813 ORTHO05D005889 1.4e-56 223.8 146 74.7
Sp2g30180 Schrenkiella parvula HOM05D004813 ORTHO05D005889 1.4e-56 223.8 214 58.9
PGSC0003DMG400018096 Solanum tuberosum HOM05D004813 ORTHO05D005889 1.4e-56 223.8 213 58.2
Glyma.17G088200 Glycine max HOM05D004813 ORTHO05D005889 1.9e-56 223.4 146 73.3
Thecc.03G014500 Theobroma cacao HOM05D004813 ORTHO05D005889 1.9e-56 223.4 147 77.6
BraA09t36642Z Brassica rapa HOM05D004813 ORTHO05D005889 2.4e-56 223.0 214 58.4
BcaB02g10019 Brassica carinata HOM05D004813 ORTHO05D005889 3.2e-56 222.6 148 74.3
CANSAT80G1068 Cannabis sativa HOM05D004813 ORTHO05D005889 3.2e-56 222.6 147 76.9
Lalb_Chr07g0182801 Lupinus albus HOM05D004813 ORTHO05D005889 3.2e-56 222.6 146 73.3
Phvul.003G201700 Phaseolus vulgaris HOM05D004813 ORTHO05D005889 3.2e-56 222.6 146 74.0
GSVIVG01007723001 Vitis vinifera HOM05D004813 ORTHO05D005889 3.2e-56 222.6 147 75.5
BolC9t54072H Brassica oleracea HOM05D004813 ORTHO05D005889 4.2e-56 222.2 214 58.4
MD06G1172400 Malus domestica HOM05D004813 ORTHO05D005889 4.2e-56 222.2 147 74.8
A07p17440 Brassica napus HOM05D004813 ORTHO05D005889 5.5e-56 221.9 212 56.6
BraA07t29465Z Brassica rapa HOM05D004813 ORTHO05D005889 5.5e-56 221.9 212 56.6
Glyma.05G038800 Glycine max HOM05D004813 ORTHO05D005889 5.5e-56 221.9 146 74.0
CsaV3_1G000640 Cucumis sativus L. HOM05D004813 ORTHO05D005889 7.1e-56 221.5 215 57.7
Rhsim12G0165800 Rhododendron simsii HOM05D004813 ORTHO05D005889 7.1e-56 221.5 148 75.0
A09p09960 Brassica napus HOM05D004813 ORTHO05D005889 9.3e-56 221.1 214 57.9
C09p11820 Brassica napus HOM05D004813 ORTHO05D005889 9.3e-56 221.1 214 58.4
MD14G1178200 Malus domestica HOM05D004813 ORTHO05D005889 2.1e-55 219.9 147 74.1
arahy.Tifrunner.gnm1.ann1.9LWV25 Arachis hypogaea HOM05D004813 ORTHO05D005889 2.7e-55 219.5 146 72.6
BcaC04g23133 Brassica carinata HOM05D004813 ORTHO05D005889 2.7e-55 219.5 214 57.5
CARHR281210 Cardamine hirsuta HOM05D004813 ORTHO05D005889 2.7e-55 219.5 212 55.7
Prupe.5G171700 Prunus persica HOM05D004813 ORTHO05D005889 3.5e-55 219.2 212 66.0
arahy.Tifrunner.gnm1.ann1.J26J1M Arachis hypogaea HOM05D004813 ORTHO05D005889 6.0e-55 218.4 210 55.7
Zm00001eb293550 Zea mays HOM05D004813 ORTHO05D005889 1.0e-54 217.6 147 73.5
Oeu016404.1 Olea europaea HOM05D004813 ORTHO05D005889 1.3e-54 217.2 148 75.7
VMungo1215G0389 Vigna mungo HOM05D004813 ORTHO05D005889 1.3e-54 217.2 146 72.6
COL.COLO4_30069 Corchorus olitorius HOM05D004813 ORTHO05D005889 3.0e-54 216.1 146 73.3
Ca_21934_v3 Cicer arietinum L. HOM05D004813 ORTHO05D005889 6.7e-54 214.9 146 72.6
Sc04g0001740 Simmondsia chinensis HOM05D004813 ORTHO05D005889 6.7e-54 214.9 148 74.3
Carub.0002s0981 Capsella rubella HOM05D004813 ORTHO05D005889 8.7e-54 214.5 147 70.7
Thhalv10003981m.g Eutrema salsugineum HOM05D004813 ORTHO05D005889 8.7e-54 214.5 147 72.1
Carub.0008s2799 Capsella rubella HOM05D004813 ORTHO05D005889 1.9e-53 213.4 214 57.0
TWI14G0980 Tripterygium wilfordii HOM05D004813 ORTHO05D005889 1.9e-53 213.4 143 75.5
vmacro16622 Vaccinium macrocarpon HOM05D004813 ORTHO05D005889 2.5e-53 213.0 140 76.4
Migut.D01957 Erythranthe guttata HOM05D004813 ORTHO05D005889 4.3e-53 212.2 148 72.3
AL8G44980 Arabidopsis lyrata HOM05D004813 ORTHO05D005889 5.6e-53 211.8 147 71.4
Gohir.D12G275800 Gossypium hirsutum HOM05D004813 ORTHO05D005889 1.3e-52 210.7 213 55.4
Os12g0133900 Oryza sativa ssp. japonica HOM05D004813 ORTHO05D005889 1.3e-52 210.7 147 70.7
Sed0018710 Sechium edule HOM05D004813 ORTHO05D005889 1.3e-52 210.7 148 70.3
Os11g0137100 Oryza sativa ssp. japonica HOM05D004813 ORTHO05D005889 1.6e-52 210.3 147 70.7
AUR62010096 Chenopodium quinoa HOM05D004813 ORTHO05D005889 2.1e-52 209.9 148 72.3
AUR62013092 Chenopodium quinoa HOM05D004813 ORTHO05D005889 2.1e-52 209.9 148 72.3
Lj9A420T39 Lonicera japonica HOM05D004813 ORTHO05D005889 2.8e-52 209.5 167 68.3
Aa31LG1G15060 Aethionema arabicum HOM05D004813 ORTHO05D005889 3.7e-52 209.1 154 70.1
Gorai.008G296300 Gossypium raimondii HOM05D004813 ORTHO05D005889 3.7e-52 209.1 213 54.9
TWI23G0210 Tripterygium wilfordii HOM05D004813 ORTHO05D005889 4.8e-52 208.8 144 72.9
AT5G66540 Arabidopsis thaliana HOM05D004813 ORTHO05D005889 6.2e-52 208.4 147 71.4
HanXRQChr15g0463041 Helianthus annuus HOM05D004813 ORTHO05D005889 8.1e-52 208.0 148 70.9
QL10p010983 Quercus lobata HOM05D004813 ORTHO05D005889 8.1e-52 208.0 147 70.7
DCAR_031351 Daucus carota HOM05D004813 ORTHO05D005889 1.1e-51 207.6 147 70.1
unitig_0.g15 Utricularia gibba HOM05D004813 ORTHO05D005889 1.1e-51 207.6 147 73.5
Lsat_1_v5_gn_4_75841 Lactuca sativa HOM05D004813 ORTHO05D005889 3.1e-51 206.1 148 68.2
Gohir.A12G275100 Gossypium hirsutum HOM05D004813 ORTHO05D005889 9.0e-51 204.5 146 70.5
ClCG06G017810 Citrullus lanatus HOM05D004813 ORTHO05D005889 1.2e-50 204.1 194 58.2
Hund02755 Selenicereus undatus HOM05D004813 ORTHO05D005889 2.0e-50 203.4 148 70.3
ATR1091G095 Amborella trichopoda HOM05D004813 ORTHO05D005889 7.6e-50 201.4 147 69.4
Psat4g058360 Pisum sativum HOM05D004813 ORTHO05D005889 1.7e-49 200.3 146 65.1
TPR.G37503 Trifolium pratense HOM05D004813 ORTHO05D005889 3.8e-49 199.1 146 67.1
Medtr4g105590 Medicago truncatula HOM05D004813 ORTHO05D005889 1.1e-48 197.6 146 65.8
RcHm_v2.0_Chr7g0193361 Rosa chinensis HOM05D004813 ORTHO05D005889 4.2e-48 195.7 147 66.7
Haze_07517 Corylus avellana HOM05D004813 ORTHO05D005889 7.1e-48 194.9 182 67.0
FAN13G1879 Fragaria x ananassa HOM05D004813 ORTHO05D005889 9.3e-48 194.5 143 69.9
SGA_v2.0_scaffold114G31819 Striga asiatica HOM05D004813 ORTHO05D005889 1.6e-47 193.7 179 62.0
FAN04G1884 Fragaria x ananassa HOM05D004813 ORTHO05D005889 2.7e-47 193.0 142 69.7
Ah.01g009190 Amaranthus hybridus HOM05D004813 ORTHO05D005889 3.5e-47 192.6 140 70.7
FvH4_5g05471 Fragaria vesca HOM05D004813 ORTHO05D005889 3.5e-47 192.6 142 69.7
ECA232G2493 Erigeron canadensis HOM05D004813 ORTHO05D005889 7.9e-47 191.4 148 63.5
FAN08G2504 Fragaria x ananassa HOM05D004813 ORTHO05D005889 7.9e-47 191.4 142 69.0
Aqoxy3G02883 Aquilegia oxysepala HOM05D004813 ORTHO05D005889 1.0e-46 191.0 147 66.7
FAN18G0441 Fragaria x ananassa HOM05D004813 ORTHO05D005889 1.0e-46 191.0 142 69.0
FAN18G4177 Fragaria x ananassa HOM05D004813 ORTHO05D005889 1.0e-46 191.0 142 69.0
PSO063G0570 Papaver somniferum HOM05D004813 ORTHO05D005889 1.3e-46 190.7 213 51.6
PSO832G2178 Papaver somniferum HOM05D004813 ORTHO05D005889 6.7e-46 188.3 213 51.2
Haze_17000 Corylus avellana HOM05D004813 ORTHO05D005889 4.3e-45 185.7 116 79.3
Nitab4.5_0008678g0020 Nicotiana tabacum HOM05D004813 ORTHO05D005889 7.4e-45 184.9 148 68.2
SalBow6G0518 Salvia bowleyana HOM05D004813 ORTHO05D005889 1.3e-44 184.1 175 57.1
EL10Ac9g21440 Beta vulgaris HOM05D004813 ORTHO05D005889 9.0e-43 177.9 127 73.2
Psat4g058280 Pisum sativum HOM05D004813 ORTHO05D005889 9.0e-43 177.9 138 63.0
MD01G1006000 Malus domestica HOM05D004813 ORTHO05D005889 7.6e-42 174.9 115 75.7
HPP92_018752 Vanilla planifolia HOM05D004813 ORTHO05D005889 1.3e-41 174.1 147 63.3
SMO367G0656 Selaginella moellendorffii HOM05D004813 ORTHO05D005889 7.2e-40 168.3 146 58.2
SMO275G0031 Selaginella moellendorffii HOM05D004813 ORTHO05D005889 9.3e-40 167.9 146 57.5
arahy.Tifrunner.gnm1.ann1.J34B41 Arachis hypogaea HOM05D004813 ORTHO05D005889 1.6e-39 167.2 148 60.8
Mapoly0077s0037 Marchantia polymorpha HOM05D004813 ORTHO05D005889 1.1e-37 161.0 136 60.3
Pp3c4_31210 Physcomitrium patens HOM05D004813 ORTHO05D005889 1.5e-37 160.6 147 58.5
Oeu020911.1 Olea europaea HOM05D004813 ORTHO05D005889 2.9e-33 146.4 139 61.2
Actinidia19105 Actinidia chinensis HOM05D004813 ORTHO05D005889 8.8e-30 134.8 150 54.7
AagrBONN_evm.TU.Sc2ySwM_369.357 Anthoceros agrestis HOM05D004813 ORTHO05D005889 9.7e-29 131.3 156 48.7
CAN.G1166.4 Capsicum annuum HOM05D004813 ORTHO05D005889 8.2e-28 128.3 145 51.0
CBR_g26354 Chara braunii HOM05D004813 ORTHO05D005889 1.7e-25 120.6 139 45.3
BolC7t43059H Brassica oleracea HOM05D004813 ORTHO05D005889 2.2e-25 120.2 144 48.6
C07p25370 Brassica napus HOM05D004813 ORTHO05D005889 3.2e-24 116.3 140 49.3
Cre08.g370601 Chlamydomonas reinhardtii HOM05D004813 ORTHO05D005889 9.4e-24 114.8 149 43.6
MBI07_g10351_MAGBIO Magnolia biondii HOM05D004813 ORTHO05D005889 6.1e-23 112.1 103 58.3
SEGI_37748 Sequoiadendron giganteum HOM05D004813 ORTHO05D005889 1.8e-22 110.5 85 64.7
CAN.G1166.5 Capsicum annuum HOM05D004813 ORTHO05D005889 4.8e-20 102.4 69 71.0
MBI14_g23619_MAGBIO Magnolia biondii HOM05D004813 ORTHO05D005889 1.2e-18 97.8 62 79.0
PRCOL_00002680 Prasinoderma coloniale HOM05D004813 ORTHO05D005889 2.2e-17 93.6 148 37.2
HanXRQChr11g0336351 Helianthus annuus HOM05D004813 ORTHO05D005889 2.7e-15 86.7 77 57.1
Lj3g0016907 Lotus japonicus HOM05D004813 ORTHO05D005889 6.1e-15 85.5 62 69.4
BcaC06g34713 Brassica carinata HOM05D004813 ORTHO05D005889 8.8e-14 81.6 130 39.2
BcaNung06644 Brassica carinata HOM05D004813 ORTHO05D005889 8.8e-14 81.6 130 39.2
MBI05_g41028_MAGBIO Magnolia biondii HOM05D000669 ORTHO05D005889 3.3e-13 79.7 47 85.1
MCO01G452 Micromonas commoda HOM05D004813 ORTHO05D005889 2.2e-12 77.0 158 32.3
SEGI_40991 Sequoiadendron giganteum HOM05D004813 ORTHO05D005889 2.2e-12 77.0 67 58.2
Actinidia19106 Actinidia chinensis HOM05D004813 ORTHO05D005889 1.4e-11 74.3 49 73.5
Lj6g0012951 Lotus japonicus HOM05D004813 ORTHO05D005889 1.2e-10 71.2 69 55.1
BcaC04g21797 Brassica carinata HOM05D004813 ORTHO05D005889 1.1e-08 64.7 55 61.8
MBI03_g03787_MAGBIO Magnolia biondii HOM05D004813 ORTHO05D005889 1.1e-08 64.7 37 81.1


User provided reference genes

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