Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR044G0116 Punica granatum HOM05D000237 ORTHO05D006530 0.0e+00 3902.8 2439 100.0
Eucgr.E01003 Eucalyptus grandis HOM05D000237 ORTHO05D006530 5.3e-199 700.3 2244 33.6
Cfa018423 Carpinus fangiana HOM05D000237 ORTHO05D001145 6.5e-197 693.3 1256 46.8
GSVIVG01008802001 Vitis vinifera HOM05D000237 ORTHO05D006530 2.2e-192 678.3 2425 33.0
Prupe.1G489000 Prunus persica HOM05D000237 ORTHO05D006530 6.3e-192 676.8 1379 41.8
Haze_17641 Corylus avellana HOM05D000237 ORTHO05D006530 1.3e-189 669.1 1287 45.3
Atru.chr13.1586 Acer truncatum HOM05D000237 ORTHO05D006530 3.2e-188 664.5 1658 39.1
QL09p032246 Quercus lobata HOM05D000237 ORTHO05D006530 2.1e-187 661.8 1272 44.7
CiPaw.15G030900 Carya illinoinensis HOM05D000237 ORTHO05D006530 5.7e-185 653.7 1651 37.7
Ciclev10000009m.g Citrus clementina HOM05D000237 ORTHO05D006530 2.4e-183 648.3 2401 31.8
Duzib041G0809 Durio zibethinus HOM05D000237 ORTHO05D006530 1.8e-175 622.1 1670 36.5
Potri.005G182900 Populus trichocarpa HOM05D000237 ORTHO05D006530 9.4e-172 609.8 1389 38.9
Thecc.08G133600 Theobroma cacao HOM05D000237 ORTHO05D006530 8.0e-171 606.7 2368 32.1
TAR628G1620 Trochodendron aralioides HOM05D000237 ORTHO05D006530 4.0e-170 604.4 1282 42.1
CSS0037931 Camellia sinensis var. sinensis HOM05D000237 ORTHO05D006530 7.5e-169 600.1 1209 43.6
RcHm_v2.0_Chr6g0296771 Rosa chinensis HOM05D000237 ORTHO05D006530 3.7e-168 597.8 1275 40.9
MD15G1133400 Malus domestica HOM05D000237 ORTHO05D006530 4.1e-167 594.3 1625 36.1
Duzib093G2205 Durio zibethinus HOM05D000237 ORTHO05D006530 4.7e-163 580.9 1065 45.1
Gohir.D05G240100 Gossypium hirsutum HOM05D000237 ORTHO05D006530 8.0e-163 580.1 1658 36.1
FvH4_2g27950 Fragaria vesca HOM05D000237 ORTHO05D006530 1.4e-162 579.3 1266 40.8
Gohir.A05G238100 Gossypium hirsutum HOM05D000237 ORTHO05D006530 4.0e-162 577.8 1674 35.7
FAN24G1388 Fragaria x ananassa HOM05D000237 ORTHO05D006530 5.2e-162 577.4 1266 40.8
FAN15G0564 Fragaria x ananassa HOM05D000237 ORTHO05D006530 6.8e-162 577.0 1270 40.9
Sabra02G0061100 Salix brachista HOM05D000237 ORTHO05D006530 2.0e-161 575.5 1665 35.4
FAN20G2323 Fragaria x ananassa HOM05D000237 ORTHO05D006530 5.7e-161 573.9 1264 41.7
TWI32G0010 Tripterygium wilfordii HOM05D000237 ORTHO05D006530 2.8e-160 571.6 1660 36.5
Gorai.009G249000 Gossypium raimondii HOM05D000237 ORTHO05D006530 1.1e-159 569.7 1682 33.2
COL.COLO4_07934 Corchorus olitorius HOM05D000237 ORTHO05D006530 3.1e-159 568.2 813 51.7
Potri.002G077700 Populus trichocarpa HOM05D000237 ORTHO05D006530 4.1e-159 567.8 1260 40.2
Actinidia15209 Actinidia chinensis HOM05D000237 ORTHO05D006530 5.9e-158 563.9 940 48.6
Duzib116G0766 Durio zibethinus HOM05D000237 ORTHO05D006530 1.3e-157 562.8 1662 37.1
CANSAT25G1894 Cannabis sativa HOM05D000237 ORTHO05D006530 1.7e-157 562.4 1668 35.6
Dinv14699 Davidia involucrata HOM05D000237 ORTHO05D006530 1.9e-156 558.9 797 53.3
FAN27G0451 Fragaria x ananassa HOM05D000237 ORTHO05D006530 6.8e-154 550.4 1267 41.1
Glyma.14G155900 Glycine max HOM05D000237 ORTHO05D006530 4.9e-152 544.3 932 45.8
Rhsim06G0089600 Rhododendron simsii HOM05D000237 ORTHO05D006530 2.4e-151 542.0 1009 45.3
TWI34G0547 Tripterygium wilfordii HOM05D000237 ORTHO05D006530 3.1e-151 541.6 981 45.1
Actinidia21273 Actinidia chinensis HOM05D000237 ORTHO05D006530 5.9e-150 537.3 957 46.0
Glyma.13G034600 Glycine max HOM05D000237 ORTHO05D006530 1.7e-149 535.8 935 45.8
COL.COLO4_07936 Corchorus olitorius HOM05D000237 ORTHO05D006530 3.8e-149 534.6 798 51.3
Nn5g28444 Nelumbo nucifera HOM05D000237 ORTHO05D006530 1.6e-147 529.3 1351 39.8
Phvul.001G067600 Phaseolus vulgaris HOM05D000237 ORTHO05D006530 2.8e-147 528.5 806 48.9
VMungo0647G1100 Vigna mungo HOM05D000237 ORTHO05D006530 3.6e-147 528.1 860 47.2
Lalb_Chr04g0253551 Lupinus albus HOM05D000237 ORTHO05D006530 3.4e-145 521.5 849 47.2
Hma1.2p1_0880F.1_g231830 Hydrangea macrophylla HOM05D000237 ORTHO05D006530 1.7e-144 519.2 731 53.5
Ca_12643_v3 Cicer arietinum L. HOM05D000237 ORTHO05D001145 2.2e-144 518.8 957 45.4
MBI03_g13492_MAGBIO Magnolia biondii HOM05D000237 ORTHO05D006530 1.4e-143 516.2 1072 41.1
Medtr1g029710 Medicago truncatula HOM05D000237 ORTHO05D006530 2.7e-142 511.9 956 45.3
Lj1g0018506 Lotus japonicus HOM05D000237 ORTHO05D006530 5.0e-141 507.7 992 43.5
TPR.G30554 Trifolium pratense HOM05D000237 ORTHO05D006530 1.0e-138 500.0 1079 39.7
Cc10_g13690 Coffea canephora HOM05D000237 ORTHO05D006530 4.0e-138 498.0 942 45.9
Dinv27266 Davidia involucrata HOM05D000237 ORTHO05D006530 5.8e-137 494.2 1439 33.8
Psat6g040880 Pisum sativum HOM05D000237 ORTHO05D006530 2.4e-135 488.8 968 43.7
arahy.Tifrunner.gnm1.ann1.8V8SFL Arachis hypogaea HOM05D000237 ORTHO05D006530 4.1e-127 461.5 788 46.4
arahy.Tifrunner.gnm1.ann1.JKU5X8 Arachis hypogaea HOM05D000237 ORTHO05D006530 9.2e-127 460.3 857 44.6
Nitab4.5_0003485g0030 Nicotiana tabacum HOM05D000237 ORTHO05D006530 2.3e-125 455.7 1290 37.7
Solyc04g057990.4 Solanum lycopersicum HOM05D000237 ORTHO05D006530 3.0e-125 455.3 771 48.8
Sopen04g025850 Solanum pennellii HOM05D000237 ORTHO05D006530 1.2e-123 449.9 771 48.4
Aqoxy6G00305 Aquilegia oxysepala HOM05D000237 ORTHO05D006530 3.1e-122 445.3 824 45.8
Thhalv10006523m.g Eutrema salsugineum HOM05D000237 ORTHO05D006530 6.8e-122 444.1 775 45.3
DCAR_003591 Daucus carota HOM05D000237 ORTHO05D006530 1.3e-120 439.9 925 42.5
Peaxi162Scf00066g00427 Petunia axillaris HOM05D000237 ORTHO05D006530 3.2e-119 435.3 805 45.1
SalBow7G1767 Salvia bowleyana HOM05D000237 ORTHO05D006530 3.5e-118 431.8 946 41.0
HanXRQChr09g0256631 Helianthus annuus HOM05D000237 ORTHO05D006530 5.1e-117 427.9 1019 39.4
Cpa.g.sc1156.4 Carica papaya HOM05D000237 ORTHO05D006530 1.1e-116 426.8 481 61.3
Hund17350 Selenicereus undatus HOM05D000237 ORTHO05D006530 1.1e-116 426.8 1587 31.6
THA.LOC104812079 Tarenaya hassleriana HOM05D000237 ORTHO05D006530 2.5e-116 425.6 952 42.4
CsaV3_7G022160 Cucumis sativus L. HOM05D000237 ORTHO05D006530 4.3e-116 424.9 1030 38.7
Migut.C01070 Erythranthe guttata HOM05D000237 ORTHO05D006530 1.6e-115 422.9 942 44.2
Carub.0001s2101 Capsella rubella HOM05D000237 ORTHO05D006530 6.9e-114 417.5 1007 39.4
C05p20570 Brassica napus HOM05D000237 ORTHO05D006530 2.6e-113 415.6 1578 31.3
MELO3C012713.2 Cucumis melo HOM05D000237 ORTHO05D006530 4.4e-113 414.8 1285 35.1
AL1G34720 Arabidopsis lyrata HOM05D000237 ORTHO05D006530 5.8e-113 414.5 850 42.9
BolC5t30755H Brassica oleracea HOM05D000237 ORTHO05D006530 7.6e-113 414.1 1578 31.3
Sp1g19110 Schrenkiella parvula HOM05D000237 ORTHO05D006530 7.6e-113 414.1 776 44.5
Nitab4.5_0000317g0120 Nicotiana tabacum HOM05D000237 ORTHO05D006530 1.7e-112 412.9 1026 40.9
AUR62013435 Chenopodium quinoa HOM05D000237 ORTHO05D006530 2.9e-112 412.1 1051 34.4
C08p20910 Brassica napus HOM05D000237 ORTHO05D006530 4.9e-112 411.4 861 39.4
BolC8t49729H Brassica oleracea HOM05D000237 ORTHO05D006530 3.5e-110 405.2 861 38.8
A06p17660 Brassica napus HOM05D000237 ORTHO05D006530 1.0e-109 403.7 840 39.9
BcaC05g26074 Brassica carinata HOM05D000237 ORTHO05D006530 5.1e-109 401.4 788 41.6
A08p28930 Brassica napus HOM05D000987 ORTHO05D006530 1.6e-107 396.4 862 38.6
BraA08t34823Z Brassica rapa HOM05D000237 ORTHO05D006530 2.8e-107 395.6 860 38.7
PSO170G5097 Papaver somniferum HOM05D000237 ORTHO05D006530 2.9e-104 385.6 826 42.0
SGA_v2.0_scaffold52G18914 Striga asiatica HOM05D000237 ORTHO05D006530 1.1e-103 383.6 864 41.3
arahy.Tifrunner.gnm1.ann1.A7GBNY Arachis hypogaea HOM05D000237 ORTHO05D006530 3.2e-103 382.1 795 41.9
ECA232G3457 Erigeron canadensis HOM05D000237 ORTHO05D006530 7.1e-103 380.9 1004 38.8
Manes.18G083000 Manihot esculenta HOM05D000237 ORTHO05D006530 9.3e-103 380.6 1367 31.1
AT1G21580 Arabidopsis thaliana HOM05D000237 ORTHO05D006530 1.6e-102 379.8 635 41.9
Ah.05g169070 Amaranthus hybridus HOM05D000237 ORTHO05D006530 6.0e-102 377.9 817 39.9
SalBow7G2018 Salvia bowleyana HOM05D000237 ORTHO05D006530 1.8e-101 376.3 784 38.0
PSO528G0213 Papaver somniferum HOM05D000237 ORTHO05D006530 5.1e-101 374.8 820 41.5
EL10Ac1g01364 Beta vulgaris HOM05D000237 ORTHO05D006530 8.7e-101 374.0 952 37.7
CARHR021940 Cardamine hirsuta HOM05D000237 ORTHO05D006530 1.6e-99 369.8 634 42.4
arahy.Tifrunner.gnm1.ann1.6HV4D5 Arachis hypogaea HOM05D000237 ORTHO05D006530 6.2e-99 367.9 819 41.4
arahy.Tifrunner.gnm1.ann1.S57KMF Arachis hypogaea HOM05D000237 ORTHO05D006530 4.5e-97 361.7 733 43.2
Sc20g0002700 Simmondsia chinensis HOM05D000237 ORTHO05D006530 4.5e-97 361.7 551 51.9
CDE08G0007 Ceratophyllum demersum HOM05D000237 ORTHO05D006530 6.0e-94 351.3 1030 36.8
Aa31LG7G5550 Aethionema arabicum HOM05D000237 ORTHO05D006530 1.3e-93 350.1 983 36.7
ClCG09G021810 Citrullus lanatus HOM05D000237 ORTHO05D006530 2.9e-88 332.4 1249 34.3
Sed0005866 Sechium edule HOM05D000237 ORTHO05D006530 1.1e-87 330.5 991 33.1
vmacro21123 Vaccinium macrocarpon HOM05D000237 ORTHO05D006530 2.7e-86 325.9 488 45.7
ATR1001G008 Amborella trichopoda HOM05D000237 ORTHO05D006530 6.3e-83 314.7 628 39.8
Zm00001eb387360 Zea mays HOM05D000237 ORTHO05D006530 4.5e-81 308.5 790 36.5
Lsat_1_v5_gn_4_135201 Lactuca sativa HOM05D000237 ORTHO05D006530 7.6e-81 307.8 796 39.7
Os06g0638000 Oryza sativa ssp. japonica HOM05D000237 ORTHO05D006530 1.8e-74 286.6 1032 32.8
AL2G37460 Arabidopsis lyrata HOM05D000237 ORTHO05D006530 9.4e-71 274.2 872 35.6
HPP92_004772 Vanilla planifolia HOM05D000237 ORTHO05D006530 3.3e-68 265.8 833 35.3
CDE06G0289 Ceratophyllum demersum HOM05D000237 ORTHO05D008083 2.9e-64 252.7 591 35.9
Mapoly0097s0070 Marchantia polymorpha HOM05D000237 ORTHO05D006530 3.8e-64 252.3 839 37.5
SMO367G0550 Selaginella moellendorffii HOM05D000237 ORTHO05D006530 2.3e-61 243.0 325 54.5
SEGI_16153 Sequoiadendron giganteum HOM05D000237 ORTHO05D006530 4.7e-54 218.8 241 49.8
SHI09235 Sapria himalayana HOM05D000237 ORTHO05D006530 7.7e-49 201.4 287 56.8
CBR_g18950 Chara braunii HOM05D000237 ORTHO05D006530 2.5e-47 196.4 506 38.5
Pp3c2_14590 Physcomitrium patens HOM05D000237 ORTHO05D006530 5.2e-45 188.7 513 39.4
AUR62007706 Chenopodium quinoa HOM05D000237 ORTHO05D006530 8.6e-40 171.4 639 30.4
PGSC0003DMG401025318 Solanum tuberosum HOM05D000237 ORTHO05D006530 3.6e-38 166.0 419 37.7
LjContig00357g0005900 Lotus japonicus HOM05D000237 ORTHO05D005612 2.0e-33 150.2 938 26.1
CARHR070760 Cardamine hirsuta HOM05D000237 ORTHO05D006530 1.3e-32 147.5 195 46.2
TPR.G40837 Trifolium pratense HOM05D000237 ORTHO05D006530 2.8e-30 139.8 122 61.5
unitig_46.g18088 Utricularia gibba HOM05D000237 ORTHO05D006530 2.6e-28 133.3 612 36.4
PGSC0003DMG402025318 Solanum tuberosum HOM05D000237 ORTHO05D006530 5.0e-24 119.0 140 50.0
Cpa.g.sc1156.5 Carica papaya HOM05D000237 ORTHO05D006530 1.1e-23 117.9 805 26.5
vmacro21124 Vaccinium macrocarpon HOM05D000237 ORTHO05D006530 6.2e-22 112.1 505 30.9
MD08G1160000 Malus domestica HOM05D000237 ORTHO05D006530 1.1e-21 111.3 218 36.2
TPR.G4655 Trifolium pratense HOM05D000237 ORTHO05D013217 1.4e-21 110.9 85 67.1
Lj4A681T41 Lonicera japonica HOM05D000237 ORTHO05D006530 4.9e-19 102.4 141 48.2
Lalb_Chr11g0066211 Lupinus albus HOM05D000237 ORTHO05D006530 5.4e-18 99.0 145 44.8
Oeu045950.1 Olea europaea HOM05D000237 ORTHO05D006530 2.5e-15 90.1 305 32.5
Cpa.g.sc1718.3 Carica papaya HOM05D000237 ORTHO05D006530 5.6e-15 89.0 258 33.3
Oeu030983.1 Olea europaea HOM05D000237 ORTHO05D006530 8.1e-14 85.1 91 58.2
Sc20g0002720 Simmondsia chinensis HOM05D000237 ORTHO05D006530 1.3e-11 77.8 101 46.5
ATR0172G001 Amborella trichopoda HOM05D000237 ORTHO05D006530 1.1e-10 74.7 141 36.9
Oeu047172.1 Olea europaea HOM05D000237 ORTHO05D006530 5.1e-08 65.9 238 28.6
SEGI_02602 Sequoiadendron giganteum HOM05D000237 ORTHO05D006530 4.3e-07 62.8 155 32.3
Lj4P681T20 Lonicera japonica HOM05D000237 ORTHO05D006530 6.2e-06 58.9 134 40.3


User provided reference genes

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