Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR042G3960 Punica granatum HOM05D002380 ORTHO05D008286 0.0e+00 1171.4 585 100.0
GSVIVG01030484001 Vitis vinifera HOM05D002380 ORTHO05D008286 7.6e-261 903.7 589 76.2
Eucgr.A01100 Eucalyptus grandis HOM05D002380 ORTHO05D008286 4.1e-259 897.9 579 76.3
CSS0029680 Camellia sinensis var. sinensis HOM05D002380 ORTHO05D008286 7.1e-259 897.1 548 79.7
Potri.014G156800 Populus trichocarpa HOM05D002380 ORTHO05D008286 5.6e-256 887.5 594 74.4
Cfa014331 Carpinus fangiana HOM05D002380 ORTHO05D008286 6.2e-255 884.0 593 74.0
Actinidia13740 Actinidia chinensis HOM05D002380 ORTHO05D008286 8.1e-255 883.6 548 78.1
ClCG02G002150 Citrullus lanatus HOM05D002380 ORTHO05D008286 2.4e-254 882.1 569 75.4
Duzib138G0368 Durio zibethinus HOM05D002380 ORTHO05D008286 6.9e-254 880.6 593 74.0
FvH4_6g42610 Fragaria vesca HOM05D002380 ORTHO05D008286 6.9e-254 880.6 591 73.4
Ciclev10014719m.g Citrus clementina HOM05D002380 ORTHO05D008286 7.6e-253 877.1 563 76.2
MD09G1112100 Malus domestica HOM05D002380 ORTHO05D008286 2.2e-252 875.5 591 72.9
Gohir.D07G193100 Gossypium hirsutum HOM05D002380 ORTHO05D008286 3.8e-252 874.8 592 73.8
Hma1.2p1_0445F.1_g154520 Hydrangea macrophylla HOM05D002380 ORTHO05D008286 1.1e-251 873.2 548 77.6
Gorai.001G216200 Gossypium raimondii HOM05D002380 ORTHO05D008286 1.4e-251 872.8 592 73.6
QL08p031162 Quercus lobata HOM05D002380 ORTHO05D008286 1.4e-251 872.8 572 75.7
PSO541G2284 Papaver somniferum HOM05D002380 ORTHO05D008286 1.9e-251 872.5 584 73.5
RcHm_v2.0_Chr2g0158461 Rosa chinensis HOM05D002380 ORTHO05D008286 1.9e-251 872.5 594 73.4
Atru.chr6.3236 Acer truncatum HOM05D002380 ORTHO05D008286 7.1e-251 870.5 569 76.1
CsaV3_7G003340 Cucumis sativus L. HOM05D002380 ORTHO05D008286 7.1e-251 870.5 560 75.5
CiPaw.04G112000 Carya illinoinensis HOM05D002380 ORTHO05D008286 1.2e-250 869.8 592 73.6
Gohir.A07G186600 Gossypium hirsutum HOM05D002380 ORTHO05D008286 2.1e-250 869.0 572 75.3
arahy.Tifrunner.gnm1.ann1.Y9X1U6 Arachis hypogaea HOM05D002380 ORTHO05D008286 1.0e-249 866.7 598 72.2
LjContig00564g0001978 Lotus japonicus HOM05D002380 ORTHO05D008286 3.9e-249 864.8 593 72.7
LjContig00564g0004339 Lotus japonicus HOM05D002380 ORTHO05D008286 3.9e-249 864.8 593 72.7
Glyma.14G046600 Glycine max HOM05D002380 ORTHO05D008286 5.1e-249 864.4 549 76.3
Sed0027871 Sechium edule HOM05D002380 ORTHO05D008286 6.6e-249 864.0 574 74.2
FAN05G1087 Fragaria x ananassa HOM05D002380 ORTHO05D008286 5.6e-248 860.9 620 69.7
arahy.Tifrunner.gnm1.ann1.C2B2I7 Arachis hypogaea HOM05D002380 ORTHO05D008286 9.6e-248 860.1 607 71.5
Prupe.3G212600 Prunus persica HOM05D002380 ORTHO05D008286 4.8e-247 857.8 538 77.5
Thecc.01G180100 Theobroma cacao HOM05D002380 ORTHO05D008286 4.8e-247 857.8 592 73.8
CANSAT64G0203 Cannabis sativa HOM05D002380 ORTHO05D008286 6.2e-247 857.4 546 76.0
Nn1g03403 Nelumbo nucifera HOM05D002380 ORTHO05D008286 3.1e-246 855.1 582 72.5
TWI18G0959 Tripterygium wilfordii HOM05D002380 ORTHO05D008286 3.1e-246 855.1 591 72.6
FAN14G4830 Fragaria x ananassa HOM05D002380 ORTHO05D008286 1.5e-245 852.8 615 69.9
Medtr8g465870 Medicago truncatula HOM05D002380 ORTHO05D008286 9.9e-245 850.1 591 71.4
Cc05_g03220 Coffea canephora HOM05D002380 ORTHO05D008286 2.2e-244 849.0 563 74.2
HanXRQChr10g0306601 Helianthus annuus HOM05D002380 ORTHO05D008286 1.1e-243 846.7 547 75.1
Sabra14G0118600 Salix brachista HOM05D002380 ORTHO05D008286 1.9e-243 845.9 673 65.2
PSO675G4452 Papaver somniferum HOM05D002380 ORTHO05D008286 2.1e-242 842.4 549 75.2
Sp4g14960 Schrenkiella parvula HOM05D002380 ORTHO05D008286 4.6e-242 841.3 591 70.1
Sopen01g045360 Solanum pennellii HOM05D002380 ORTHO05D008286 2.3e-241 839.0 548 74.5
CAN.G855.60 Capsicum annuum HOM05D002380 ORTHO05D008286 5.1e-241 837.8 564 73.2
VMungo0647G2578 Vigna mungo HOM05D002380 ORTHO05D008286 5.1e-241 837.8 549 73.6
ECA234G2702 Erigeron canadensis HOM05D002380 ORTHO05D008286 8.7e-241 837.0 546 74.0
Solyc01g102950.3 Solanum lycopersicum HOM05D002380 ORTHO05D008286 4.3e-240 834.7 547 74.2
AUR62037919 Chenopodium quinoa HOM05D002380 ORTHO05D008286 5.6e-240 834.3 554 72.7
SalBow1G4831 Salvia bowleyana HOM05D002380 ORTHO05D008286 5.6e-240 834.3 555 73.7
Carub.0004s1397 Capsella rubella HOM05D002380 ORTHO05D008286 9.6e-240 833.6 591 69.5
BraA03t11082Z Brassica rapa HOM05D002380 ORTHO05D008286 1.3e-239 833.2 591 69.2
Aa31LG5G4710 Aethionema arabicum HOM05D002380 ORTHO05D008286 3.7e-239 831.6 591 69.4
CARHR126480 Cardamine hirsuta HOM05D002380 ORTHO05D008286 3.7e-239 831.6 591 69.2
Migut.H01235 Erythranthe guttata HOM05D002380 ORTHO05D008286 3.7e-239 831.6 565 73.1
SalBow1G6561 Salvia bowleyana HOM05D002380 ORTHO05D008286 3.7e-239 831.6 555 73.5
AUR62040170 Chenopodium quinoa HOM05D002380 ORTHO05D008286 1.8e-238 829.3 554 72.7
Thhalv10016422m.g Eutrema salsugineum HOM05D002380 ORTHO05D008286 1.8e-238 829.3 591 69.2
C03p21270 Brassica napus HOM05D002380 ORTHO05D008286 3.1e-238 828.6 595 69.2
BolC3t14508H Brassica oleracea HOM05D002380 ORTHO05D008286 3.1e-238 828.6 595 69.4
BcaC01g05900 Brassica carinata HOM05D002380 ORTHO05D008286 5.3e-238 827.8 595 69.2
A03p18220 Brassica napus HOM05D002380 ORTHO05D008286 6.9e-238 827.4 591 68.9
Phvul.008G211500 Phaseolus vulgaris HOM05D002380 ORTHO05D008286 7.6e-237 823.9 555 73.7
THA.LOC104826140 Tarenaya hassleriana HOM05D002380 ORTHO05D008286 2.2e-236 822.4 591 70.1
BcaB01g03970 Brassica carinata HOM05D002380 ORTHO05D008286 2.4e-235 818.9 593 68.3
Nitab4.5_0005164g0050 Nicotiana tabacum HOM05D002380 ORTHO05D006960 1.6e-234 816.2 549 72.1
Lj1A778T40 Lonicera japonica HOM05D002380 ORTHO05D008286 1.9e-232 809.3 624 66.2
AL4G28040 Arabidopsis lyrata HOM05D002380 ORTHO05D008286 3.3e-232 808.5 540 72.2
Rhsim06G0166100 Rhododendron simsii HOM05D002380 ORTHO05D008286 3.7e-231 805.1 584 69.7
CDE04G2212 Ceratophyllum demersum HOM05D002380 ORTHO05D008286 2.1e-226 789.3 580 68.1
DCAR_019750 Daucus carota HOM05D002380 ORTHO05D008286 7.9e-226 787.3 548 70.6
Lalb_Chr04g0249901 Lupinus albus HOM05D002380 ORTHO05D008286 1.8e-225 786.2 504 74.8
Peaxi162Scf00011g02118 Petunia axillaris HOM05D002380 ORTHO05D008286 3.3e-224 781.9 560 69.8
Os08g0422000 Oryza sativa ssp. japonica HOM05D002380 ORTHO05D008286 7.4e-224 780.8 543 71.6
Lsat_1_v5_gn_5_123621 Lactuca sativa HOM05D002380 ORTHO05D008286 6.1e-218 761.1 547 69.7
TAR626G1235 Trochodendron aralioides HOM05D002380 ORTHO05D008286 1.0e-217 760.4 512 74.8
Ca_06119_v3 Cicer arietinum L. HOM05D002380 ORTHO05D008286 1.8e-217 759.6 561 68.8
EL10Ac7g16733 Beta vulgaris HOM05D002380 ORTHO05D008286 1.1e-216 756.9 549 67.8
AUR62044039 Chenopodium quinoa HOM05D002380 ORTHO05D008286 5.7e-216 754.6 554 67.9
ATR0059G008 Amborella trichopoda HOM05D002380 ORTHO05D008286 3.7e-215 751.9 550 66.0
Psat0s2606g0080 Pisum sativum HOM05D002380 ORTHO05D008286 2.4e-214 749.2 502 74.3
MELO3C018839.2 Cucumis melo HOM05D002380 ORTHO05D008286 1.1e-208 730.3 531 69.5
Nitab4.5_0003247g0030 Nicotiana tabacum HOM05D002380 ORTHO05D006960 1.3e-207 726.9 549 65.4
Manes.12G071600 Manihot esculenta HOM05D002380 ORTHO05D008286 3.4e-205 718.8 487 73.9
vmacro12176 Vaccinium macrocarpon HOM05D002380 ORTHO05D008286 1.4e-203 713.4 575 65.0
Sc21g0001190 Simmondsia chinensis HOM05D002380 ORTHO05D008286 4.2e-203 711.8 486 72.0
Hma1.2p1_0445F.1_g154530 Hydrangea macrophylla HOM05D002380 ORTHO05D008286 2.1e-194 682.9 539 64.6
Haze_12786 Corylus avellana HOM05D002380 ORTHO05D008286 8.0e-194 681.0 591 61.9
HPP92_026432 Vanilla planifolia HOM05D002380 ORTHO05D008286 1.0e-193 680.6 485 67.6
Pp3c11_22720 Physcomitrium patens HOM05D002380 ORTHO05D008286 7.7e-189 664.5 552 58.3
Mapoly0041s0126 Marchantia polymorpha HOM05D002380 ORTHO05D008286 1.1e-182 644.0 569 56.1
Aqoxy1G02993 Aquilegia oxysepala HOM05D002380 ORTHO05D008286 1.5e-179 633.6 574 58.9
Dinv08737 Davidia involucrata HOM05D002380 ORTHO05D008286 4.2e-179 632.1 451 71.8
AagrBONN_evm.TU.Sc2ySwM_368.2332 Anthoceros agrestis HOM05D002380 ORTHO05D008286 1.6e-170 603.6 520 57.9
FAN02G0433 Fragaria x ananassa HOM05D002380 ORTHO05D008286 9.5e-155 551.2 568 56.0
COL.COLO4_21855 Corchorus olitorius HOM05D002380 ORTHO05D008286 2.5e-147 526.6 335 77.3
Hma1.2p1_0895F.1_g233700 Hydrangea macrophylla HOM05D002380 ORTHO05D008286 2.8e-146 523.1 319 79.0
Cpa.g.sc132.5 Carica papaya HOM05D002380 ORTHO05D008286 4.7e-146 522.3 385 68.1
Zm00001eb179140 Zea mays HOM05D002380 ORTHO05D008286 6.8e-145 518.5 449 59.7
Hund20419 Selenicereus undatus HOM05D002380 ORTHO05D008286 1.1e-139 501.1 345 69.9
SGA_v2.0_scaffold159G37563 Striga asiatica HOM05D002380 ORTHO05D001198 3.3e-139 499.6 547 51.6
PGSC0003DMG400020719 Solanum tuberosum HOM05D002380 ORTHO05D008286 4.7e-138 495.7 309 76.4
AT2G32640 Arabidopsis thaliana HOM05D002380 ORTHO05D008286 5.6e-131 472.2 387 60.7
Cre06.g264250 Chlamydomonas reinhardtii HOM05D002380 ORTHO05D008286 1.3e-124 451.1 575 42.1
Ah.15g091260 Amaranthus hybridus HOM05D002380 ORTHO05D008286 3.7e-122 443.0 390 60.0
TPR.G26188 Trifolium pratense HOM05D002380 ORTHO05D008286 9.3e-118 428.3 345 63.8
SMO111G0098 Selaginella moellendorffii HOM05D002380 ORTHO05D008286 9.7e-99 365.2 367 51.2
Cpa.g.sc132.4 Carica papaya HOM05D002380 ORTHO05D008286 3.7e-98 363.2 206 85.0
Cre04.g221550 Chlamydomonas reinhardtii HOM05D002380 ORTHO05D008286 9.1e-97 358.6 622 35.7
unitig_62.g23230 Utricularia gibba HOM05D002380 ORTHO05D008286 7.2e-86 322.4 246 67.1
MBI19_g44049_MAGBIO Magnolia biondii HOM05D002380 ORTHO05D008286 7.4e-83 312.4 227 69.2
SEGI_31657 Sequoiadendron giganteum HOM05D002380 ORTHO05D008286 6.3e-58 229.6 160 68.1
MBI19_g40900_MAGBIO Magnolia biondii HOM05D002380 ORTHO05D008286 7.0e-57 226.1 140 75.0
SEGI_17941 Sequoiadendron giganteum HOM05D002380 ORTHO05D008286 3.1e-44 184.1 158 58.2
COL.COLO4_21854 Corchorus olitorius HOM05D002380 ORTHO05D008286 6.4e-42 176.4 130 66.2
CBR_g8452 Chara braunii HOM05D002380 ORTHO05D008286 7.3e-38 162.9 149 52.3
MBI19_g42463_MAGBIO Magnolia biondii HOM05D002380 ORTHO05D008286 1.1e-33 149.1 160 51.9
Aqoxy1G02984 Aquilegia oxysepala HOM05D002380 ORTHO05D008286 2.3e-31 141.4 99 69.7
Hund20420 Selenicereus undatus HOM05D002380 ORTHO05D010615 2.0e-27 128.3 85 67.1
CBR_g12620 Chara braunii HOM05D005350 ORTHO05D008838 9.9e-27 125.9 100 52.0
SEGI_28059 Sequoiadendron giganteum HOM05D002380 ORTHO05D008286 5.4e-25 120.2 85 69.4
LjContig00564g0015808 Lotus japonicus HOM05D002380 ORTHO05D008286 8.7e-23 112.8 65 72.3
Gohir.A07G186850 Gossypium hirsutum HOM05D002380 ORTHO05D026288 5.8e-19 100.1 74 70.3
Actinidia09730 Actinidia chinensis HOM05D002380 ORTHO05D008286 3.2e-17 94.4 105 51.4
CBR_g8454 Chara braunii HOM05D002380 ORTHO05D008286 5.6e-14 83.6 85 45.9
SEGI_40123 Sequoiadendron giganteum HOM05D002380 ORTHO05D008286 6.2e-13 80.1 58 70.7
Actinidia09729 Actinidia chinensis HOM05D002380 ORTHO05D026288 1.7e-10 72.0 45 80.0
Lalb_Chr04g0249911 Lupinus albus HOM05D002380 ORTHO05D026288 3.8e-10 70.9 45 77.8
Lj1P772T14 Lonicera japonica HOM05D002380 ORTHO05D008286 4.9e-10 70.5 77 53.2
CAN.G96.10 Capsicum annuum HOM05D002380 ORTHO05D026288 2.3e-07 61.6 45 64.4
Lj5g0008066 Lotus japonicus HOM05D002380 ORTHO05D008286 2.5e-06 58.2 35 68.6
CBR_g8455 Chara braunii HOM05D002380 ORTHO05D008286 7.4e-06 56.6 69 47.8


User provided reference genes

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