Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR042G3371 Punica granatum HOM05D007093 ORTHO05D008910 1.3e-265 919.5 564 100.0
Dinv11483 Davidia involucrata HOM05D007093 ORTHO05D008910 5.4e-123 445.7 464 64.9
Cfa007712 Carpinus fangiana HOM05D007093 ORTHO05D008910 3.9e-121 439.5 518 58.9
Haze_14367 Corylus avellana HOM05D007093 ORTHO05D008910 7.3e-120 435.3 518 58.7
TAR622G0743 Trochodendron aralioides HOM05D007093 ORTHO05D008910 5.3e-118 429.1 433 68.4
MD09G1077000 Malus domestica HOM05D007093 ORTHO05D008910 9.0e-118 428.3 539 59.6
CANSAT64G0836 Cannabis sativa HOM05D007093 ORTHO05D008910 2.6e-117 426.8 462 64.3
RcHm_v2.0_Chr2g0164431 Rosa chinensis HOM05D007093 ORTHO05D008910 2.6e-117 426.8 438 67.1
QL09p029458 Quercus lobata HOM05D007093 ORTHO05D008910 4.5e-117 426.0 564 55.0
CiPaw.04G051100 Carya illinoinensis HOM05D007093 ORTHO05D008910 7.6e-117 425.2 463 64.1
Ciclev10011344m.g Citrus clementina HOM05D007093 ORTHO05D008910 2.9e-116 423.3 464 62.7
Atru.chr6.1376 Acer truncatum HOM05D007093 ORTHO05D008910 8.4e-116 421.8 440 65.7
FAN09G1105 Fragaria x ananassa HOM05D007093 ORTHO05D008910 1.9e-115 420.6 470 63.0
FAN05G3563 Fragaria x ananassa HOM05D007093 ORTHO05D008910 2.4e-115 420.2 469 63.1
FAN02G0988 Fragaria x ananassa HOM05D007093 ORTHO05D008910 1.2e-114 417.9 470 62.8
FvH4_6g46090 Fragaria vesca HOM05D007093 ORTHO05D008910 1.6e-114 417.5 469 62.3
CSS0026118 Camellia sinensis var. sinensis HOM05D007093 ORTHO05D008910 2.7e-114 416.8 458 61.8
Manes.02G051500 Manihot esculenta HOM05D007093 ORTHO05D008910 2.3e-113 413.7 529 61.2
QL09p029436 Quercus lobata HOM05D007093 ORTHO05D008910 8.7e-113 411.8 454 57.3
vmacro19123 Vaccinium macrocarpon HOM05D007093 ORTHO05D008910 1.5e-112 411.0 426 65.5
Rhsim10G0045200 Rhododendron simsii HOM05D007093 ORTHO05D008910 7.4e-112 408.7 438 65.3
SalBow1G5933 Salvia bowleyana HOM05D007093 ORTHO05D008910 2.8e-111 406.8 456 62.7
Potri.017G090500 Populus trichocarpa HOM05D007093 ORTHO05D008910 4.0e-110 402.9 458 65.9
PSO478G5205 Papaver somniferum HOM05D007093 ORTHO05D008910 2.0e-109 400.6 458 64.2
Gorai.006G011900 Gossypium raimondii HOM05D007093 ORTHO05D008910 3.4e-109 399.8 442 68.3
TWI60G1187 Tripterygium wilfordii HOM05D007093 ORTHO05D008910 5.8e-109 399.1 440 59.1
Cpa.g.sc14.149 Carica papaya HOM05D007093 ORTHO05D008910 1.3e-108 397.9 439 64.7
PSO017G2846 Papaver somniferum HOM05D007093 ORTHO05D008910 1.3e-108 397.9 527 57.1
MSTRG.3018 Avicennia marina HOM05D007093 ORTHO05D008910 1.7e-108 397.5 458 64.4
Gohir.A09G011300 Gossypium hirsutum HOM05D007093 ORTHO05D008910 3.8e-108 396.4 442 66.7
Gohir.D09G010300 Gossypium hirsutum HOM05D007093 ORTHO05D008910 3.8e-108 396.4 442 67.0
Peaxi162Scf00166g00640 Petunia axillaris HOM05D007093 ORTHO05D008910 6.4e-108 395.6 496 63.1
Cc07_g04020 Coffea canephora HOM05D007093 ORTHO05D008910 1.3e-105 387.9 466 59.7
MELO3C022059.2 Cucumis melo HOM05D007093 ORTHO05D008910 3.3e-104 383.3 459 59.0
Phvul.008G024300 Phaseolus vulgaris HOM05D007093 ORTHO05D008910 6.2e-103 379.0 444 61.5
VMungo1383G0771 Vigna mungo HOM05D007093 ORTHO05D008910 9.0e-102 375.2 444 61.3
Eucgr.J01427 Eucalyptus grandis HOM05D007093 ORTHO05D008910 3.4e-101 373.2 406 69.0
AUR62042568 Chenopodium quinoa HOM05D007093 ORTHO05D008910 1.0e-100 371.7 437 60.0
Nitab4.5_0000565g0100 Nicotiana tabacum HOM05D007093 ORTHO05D008910 1.7e-100 370.9 458 64.8
Sed0021178 Sechium edule HOM05D007093 ORTHO05D008910 2.9e-100 370.2 445 64.9
Medtr7g017610 Medicago truncatula HOM05D007093 ORTHO05D008910 3.8e-100 369.8 438 62.3
Zm00001eb008430 Zea mays HOM05D007093 ORTHO05D008910 4.9e-100 369.4 530 55.1
AUR62018158 Chenopodium quinoa HOM05D007093 ORTHO05D008910 1.4e-99 367.9 437 62.0
Glyma.08G254100 Glycine max HOM05D007093 ORTHO05D008910 1.9e-99 367.5 454 62.6
SGA_v2.0_scaffold52G19185 Striga asiatica HOM05D007093 ORTHO05D008910 7.1e-99 365.5 458 61.6
CAN.G206.202 Capsicum annuum HOM05D007093 ORTHO05D008910 9.3e-99 365.2 534 55.2
Ca_06961_v3 Cicer arietinum L. HOM05D007093 ORTHO05D008910 2.7e-98 363.6 435 62.3
CARHR153970 Cardamine hirsuta HOM05D007093 ORTHO05D008910 6.0e-98 362.5 440 60.5
Nn4g23352 Nelumbo nucifera HOM05D007093 ORTHO05D008910 6.0e-98 362.5 385 67.0
Lj1g0021235 Lotus japonicus HOM05D007093 ORTHO05D008910 7.9e-98 362.1 443 61.9
Thhalv10003982m.g Eutrema salsugineum HOM05D007093 ORTHO05D008910 1.3e-97 361.3 440 60.0
Sp2g17890 Schrenkiella parvula HOM05D007093 ORTHO05D008910 8.7e-97 358.6 441 59.2
TPR.G3254 Trifolium pratense HOM05D007093 ORTHO05D008910 1.5e-96 357.8 466 58.4
Carub.0005s0800 Capsella rubella HOM05D007093 ORTHO05D008910 2.5e-96 357.1 440 60.2
Glyma.18G276600 Glycine max HOM05D007093 ORTHO05D008910 2.5e-96 357.1 457 60.8
BcaB07g30086 Brassica carinata HOM05D007093 ORTHO05D008910 5.7e-96 355.9 573 50.3
Sabra17G0079700 Salix brachista HOM05D007093 ORTHO05D008910 1.6e-95 354.4 403 64.0
Sopen02g033330 Solanum pennellii HOM05D007093 ORTHO05D008910 2.2e-95 354.0 459 62.5
Actinidia07826 Actinidia chinensis HOM05D007093 ORTHO05D008910 2.8e-95 353.6 430 63.5
Psat3g194440 Pisum sativum HOM05D007093 ORTHO05D008910 8.2e-95 352.1 505 52.9
AT3G29290 Arabidopsis thaliana HOM05D007093 ORTHO05D008910 1.1e-94 351.7 440 61.6
AL5G19290 Arabidopsis lyrata HOM05D007093 ORTHO05D008910 2.4e-94 350.5 440 60.0
arahy.Tifrunner.gnm1.ann1.H8YVTX Arachis hypogaea HOM05D007093 ORTHO05D008910 5.3e-94 349.4 471 61.1
Oeu000638.1 Olea europaea HOM05D007093 ORTHO05D008910 9.0e-94 348.6 404 66.3
Lalb_Chr10g0092581 Lupinus albus HOM05D007093 ORTHO05D008910 2.0e-93 347.4 442 64.5
Ah.10g031960 Amaranthus hybridus HOM05D007093 ORTHO05D008910 1.3e-92 344.7 494 56.9
Sc10g0003260 Simmondsia chinensis HOM05D007093 ORTHO05D008910 3.8e-92 343.2 436 60.6
arahy.Tifrunner.gnm1.ann1.T191C4 Arachis hypogaea HOM05D007093 ORTHO05D008910 1.4e-91 341.3 501 58.3
ClCG11G005040 Citrullus lanatus HOM05D007093 ORTHO05D008910 7.9e-90 335.5 441 56.7
Migut.H00649 Erythranthe guttata HOM05D007093 ORTHO05D008910 4.3e-88 329.7 444 59.9
Lj4A116G82 Lonicera japonica HOM05D007093 ORTHO05D008910 5.7e-88 329.3 381 64.6
Prupe.3G247100 Prunus persica HOM05D007093 ORTHO05D008910 9.7e-88 328.6 537 53.3
DCAR_005548 Daucus carota HOM05D007093 ORTHO05D008910 1.3e-87 328.2 402 58.5
Aa31LG10G7310 Aethionema arabicum HOM05D007093 ORTHO05D006741 4.5e-85 319.7 423 63.1
GSVIVG01011494001 Vitis vinifera HOM05D007093 ORTHO05D008910 4.5e-85 319.7 458 60.0
BcaC06g33684 Brassica carinata HOM05D007093 ORTHO05D008910 5.0e-84 316.2 444 59.7
Nitab4.5_0008213g0020 Nicotiana tabacum HOM05D007093 ORTHO05D008910 1.4e-83 314.7 459 59.7
PGSC0003DMG400001354 Solanum tuberosum HOM05D007093 ORTHO05D008910 4.2e-83 313.2 498 56.4
C07p38180 Brassica napus HOM05D007093 ORTHO05D008910 5.5e-83 312.8 444 59.5
Solyc02g088600.4 Solanum lycopersicum HOM05D007093 ORTHO05D008910 2.7e-82 310.5 459 59.0
Lsat_1_v5_gn_2_87781 Lactuca sativa HOM05D007093 ORTHO05D008910 1.8e-81 307.8 458 56.8
Thecc.04G091300 Theobroma cacao HOM05D007093 ORTHO05D008910 5.1e-81 306.2 442 61.8
EL10Ac2g03091 Beta vulgaris HOM05D007093 ORTHO05D008910 6.7e-81 305.8 492 53.9
ATR0064G018 Amborella trichopoda HOM05D007093 ORTHO05D008910 1.3e-79 301.6 484 57.0
BolC7t44340H Brassica oleracea HOM05D007093 ORTHO05D008910 3.1e-78 297.0 444 56.1
COL.COLO4_21381 Corchorus olitorius HOM05D007093 ORTHO05D008910 7.7e-77 292.4 410 59.5
Duzib147G1133 Durio zibethinus HOM05D007093 ORTHO05D008910 1.4e-75 288.1 520 51.2
unitig_899.g15158 Utricularia gibba HOM05D007093 ORTHO05D008910 7.0e-70 269.2 433 37.6
C02p55490 Brassica napus HOM05D007093 ORTHO05D008910 3.5e-69 266.9 380 40.3
BolC2t11605H Brassica oleracea HOM05D007093 ORTHO05D008910 3.5e-69 266.9 380 40.3
ECA238G1523 Erigeron canadensis HOM05D007093 ORTHO05D008910 2.3e-65 254.2 484 45.7
HanXRQChr07g0199471 Helianthus annuus HOM05D007093 ORTHO05D008910 2.3e-65 254.2 389 56.6
THA.LOC104805501 Tarenaya hassleriana HOM05D007093 ORTHO05D008910 2.2e-63 247.7 458 53.3
A06p39990 Brassica napus HOM05D007093 ORTHO05D008910 2.4e-62 244.2 444 52.9
BraA06t26914Z Brassica rapa HOM05D007093 ORTHO05D008910 2.4e-62 244.2 444 52.9
CsaV3_5G038790 Cucumis sativus L. HOM05D007093 ORTHO05D008910 7.5e-56 222.6 404 53.2
SEGI_28807 Sequoiadendron giganteum HOM05D007093 ORTHO05D008910 2.2e-55 221.1 390 52.1
CDE10G0932 Ceratophyllum demersum HOM05D007093 ORTHO05D008910 4.8e-55 219.9 223 49.3
Os03g0211600 Oryza sativa ssp. japonica HOM05D007093 ORTHO05D008910 3.5e-53 213.8 190 55.8
Zm00001eb408510 Zea mays HOM05D007093 ORTHO05D008910 1.9e-51 208.0 190 52.6
C02p55430 Brassica napus HOM05D007093 ORTHO05D008910 2.8e-47 194.1 355 34.9
BolC2t11599H Brassica oleracea HOM05D007093 ORTHO05D008910 2.8e-47 194.1 355 34.9
BcaC03g17570 Brassica carinata HOM05D007093 ORTHO05D008910 4.0e-33 147.1 318 32.1
RcHm_v2.0_Chr2g0164471 Rosa chinensis HOM05D007093 ORTHO05D008910 1.9e-30 138.3 107 66.4
SMO364G0448 Selaginella moellendorffii HOM05D007093 ORTHO05D008910 9.6e-11 72.8 148 35.1
A02p36520 Brassica napus HOM05D007093 ORTHO05D008910 3.6e-10 70.9 110 39.1
BraA02t08648Z Brassica rapa HOM05D007093 ORTHO05D008910 3.6e-10 70.9 110 39.1
Sc02g0009090 Simmondsia chinensis HOM05D005833 ORTHO05D008135 1.8e-09 68.6 141 29.8
Medtr2g007030 Medicago truncatula HOM05D007322 ORTHO05D009029 9.0e-09 66.2 133 27.1
Phvul.001G001200 Phaseolus vulgaris HOM05D005833 ORTHO05D008135 3.4e-08 64.3 142 26.8
arahy.Tifrunner.gnm1.ann1.BYDN2S Arachis hypogaea HOM05D007322 ORTHO05D009029 5.8e-08 63.5 169 24.9
arahy.Tifrunner.gnm1.ann1.YY4I9I Arachis hypogaea HOM05D007322 ORTHO05D009029 5.8e-08 63.5 169 24.9
AagrBONN_evm.TU.Sc2ySwM_368.547 Anthoceros agrestis HOM05D007093 ORTHO05D008910 9.9e-08 62.8 149 28.9
BraA06t23970Z Brassica rapa HOM05D007322 ORTHO05D009029 1.7e-07 62.0 139 27.3
Zm00001eb108830 Zea mays HOM05D005362 ORTHO05D006895 1.7e-07 62.0 172 27.3
BcaNung04765 Brassica carinata HOM05D007322 ORTHO05D009029 2.9e-07 61.2 139 26.6
CDE09G0025 Ceratophyllum demersum HOM05D005833 ORTHO05D008135 2.9e-07 61.2 157 22.3
GSVIVG01008674001 Vitis vinifera HOM05D005833 ORTHO05D008135 2.9e-07 61.2 141 27.7
BcaC05g24974 Brassica carinata HOM05D007322 ORTHO05D009029 3.8e-07 60.8 139 26.6
Haze_22762 Corylus avellana HOM05D005833 ORTHO05D008135 3.8e-07 60.8 141 26.2
Sp1g09630 Schrenkiella parvula HOM05D007322 ORTHO05D009029 3.8e-07 60.8 139 26.6
Actinidia15488 Actinidia chinensis HOM05D005833 ORTHO05D008135 8.4e-07 59.7 140 26.4
Cpa.g.sc26.202 Carica papaya HOM05D005833 ORTHO05D008135 8.4e-07 59.7 141 26.2
CiPaw.12G008600 Carya illinoinensis HOM05D005833 ORTHO05D008135 8.4e-07 59.7 141 26.2
Solyc04g082320.3 Solanum lycopersicum HOM05D005833 ORTHO05D008135 8.4e-07 59.7 141 29.1
Actinidia17037 Actinidia chinensis HOM05D005833 ORTHO05D008135 1.1e-06 59.3 140 26.4
Prupe.5G207600 Prunus persica HOM05D005362 ORTHO05D006895 1.1e-06 59.3 165 28.5
QL02p014018 Quercus lobata HOM05D005833 ORTHO05D008135 1.1e-06 59.3 141 25.5
Atru.chr9.109 Acer truncatum HOM05D004783 ORTHO05D005581 1.4e-06 58.9 151 25.8
CAN.G930.13 Capsicum annuum HOM05D007173 ORTHO05D009151 1.4e-06 58.9 168 22.6
Glyma.18G276500 Glycine max HOM05D004127 ORTHO05D005119 1.4e-06 58.9 136 25.0
Nitab4.5_0000939g0040 Nicotiana tabacum HOM05D005362 ORTHO05D006895 1.4e-06 58.9 165 27.3
Sed0017496 Sechium edule HOM05D000855 ORTHO05D008530 1.4e-06 58.9 150 27.3
CAN.G1228.5 Capsicum annuum HOM05D005362 ORTHO05D006895 1.9e-06 58.5 165 27.3
FAN18G1084 Fragaria x ananassa HOM05D002453 ORTHO05D008746 1.9e-06 58.5 158 27.2
Nitab4.5_0000588g0140 Nicotiana tabacum HOM05D005833 ORTHO05D008135 1.9e-06 58.5 141 27.7
Solyc03g114920.1 Solanum lycopersicum HOM05D005362 ORTHO05D006895 1.9e-06 58.5 165 26.7
PGSC0003DMG400024629 Solanum tuberosum HOM05D005362 ORTHO05D006895 1.9e-06 58.5 165 26.7
C02p47730 Brassica napus HOM05D005674 ORTHO05D007015 2.4e-06 58.2 159 26.4
BolC2t10809H Brassica oleracea HOM05D005674 ORTHO05D007015 2.4e-06 58.2 159 26.4
TAR381G0753 Trochodendron aralioides HOM05D005833 ORTHO05D008135 2.4e-06 58.2 141 26.2
Glyma.08G254000 Glycine max HOM05D004127 ORTHO05D005119 3.2e-06 57.8 136 25.0
Lj6g0009763 Lotus japonicus HOM05D007322 ORTHO05D009029 3.2e-06 57.8 200 23.5
Nitab4.5_0003441g0070 Nicotiana tabacum HOM05D005362 ORTHO05D006895 3.2e-06 57.8 165 27.3
Peaxi162Scf00893g00432 Petunia axillaris HOM05D005833 ORTHO05D008135 3.2e-06 57.8 141 27.7
Sc03g0010580 Simmondsia chinensis HOM05D002453 ORTHO05D008746 3.2e-06 57.8 155 27.1
Ah.08g211930 Amaranthus hybridus HOM05D000855 ORTHO05D008530 4.2e-06 57.4 146 28.8
AagrBONN_evm.TU.Sc2ySwM_117.1329 Anthoceros agrestis HOM05D000001 ORTHO05D000003 4.2e-06 57.4 203 22.7
ClCG10G020580 Citrullus lanatus HOM05D001673 ORTHO05D002312 4.2e-06 57.4 150 30.0
Glyma.10G049200 Glycine max HOM05D000855 ORTHO05D008530 5.4e-06 57.0 147 23.8
Nn5g30935 Nelumbo nucifera HOM05D005833 ORTHO05D008135 5.4e-06 57.0 145 23.4
Ah.11g041110 Amaranthus hybridus HOM05D005833 ORTHO05D008135 7.1e-06 56.6 151 23.8
AagrBONN_evm.TU.Sc2ySwM_228.1639 Anthoceros agrestis HOM05D000001 ORTHO05D000003 7.1e-06 56.6 193 19.7
FAN18G1604 Fragaria x ananassa HOM05D002453 ORTHO05D008746 7.1e-06 56.6 162 26.5
MBI04_g31965_MAGBIO Magnolia biondii HOM05D004783 ORTHO05D005581 7.1e-06 56.6 146 27.4
MBI13_g05940_MAGBIO Magnolia biondii HOM05D000424 ORTHO05D000355 7.1e-06 56.6 199 26.1
CSS0049151 Camellia sinensis var. sinensis HOM05D005833 ORTHO05D008135 9.3e-06 56.2 140 24.3
Duzib093G1662 Durio zibethinus HOM05D000001 ORTHO05D000003 9.3e-06 56.2 148 26.4
MBI04_g31977_MAGBIO Magnolia biondii HOM05D004783 ORTHO05D005581 9.3e-06 56.2 146 27.4


User provided reference genes

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