Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR042G3093 Punica granatum HOM05D005404 ORTHO05D006623 4.1e-58 228.0 129 100.0
Duzib101G0001 Durio zibethinus HOM05D005404 ORTHO05D006623 1.1e-52 209.9 129 92.2
Duzib192G1075 Durio zibethinus HOM05D005404 ORTHO05D006623 1.1e-52 209.9 129 92.2
Duzib160G0646 Durio zibethinus HOM05D005404 ORTHO05D006623 2.6e-52 208.8 129 90.7
Duzib235G1537 Durio zibethinus HOM05D005404 ORTHO05D006623 5.7e-52 207.6 129 91.5
Thecc.06G156200 Theobroma cacao HOM05D005404 ORTHO05D006623 5.7e-52 207.6 129 89.9
Gohir.A10G038300 Gossypium hirsutum HOM05D005404 ORTHO05D006623 4.8e-51 204.5 129 89.9
Gohir.D10G039300 Gossypium hirsutum HOM05D005404 ORTHO05D006623 1.4e-50 203.0 129 89.1
Gorai.011G041300 Gossypium raimondii HOM05D005404 ORTHO05D006623 1.4e-50 203.0 129 89.1
PSO017G4964 Papaver somniferum HOM05D005404 ORTHO05D006623 5.3e-50 201.1 127 88.2
Aqoxy4G00127 Aquilegia oxysepala HOM05D005404 ORTHO05D006623 7.0e-50 200.7 129 89.1
HanXRQChr11g0340931 Helianthus annuus HOM05D005404 ORTHO05D006623 7.0e-50 200.7 129 88.4
Hund21493 Selenicereus undatus HOM05D005404 ORTHO05D006623 1.2e-49 199.9 129 87.6
arahy.Tifrunner.gnm1.ann1.HITJ74 Arachis hypogaea HOM05D005404 ORTHO05D006623 2.0e-49 199.1 129 86.8
Ciclev10017167m.g Citrus clementina HOM05D005404 ORTHO05D006623 2.0e-49 199.1 130 89.2
CANSAT35G0205 Cannabis sativa HOM05D005404 ORTHO05D006623 2.6e-49 198.7 129 86.0
Eucgr.E02375 Eucalyptus grandis HOM05D005404 ORTHO05D006623 2.6e-49 198.7 129 87.6
VMungo0251G2631 Vigna mungo HOM05D005404 ORTHO05D006623 2.6e-49 198.7 129 86.8
Ca_18287_v3 Cicer arietinum L. HOM05D005404 ORTHO05D006623 4.5e-49 198.0 129 86.0
PSO170G1289 Papaver somniferum HOM05D005404 ORTHO05D006623 4.5e-49 198.0 127 86.6
TAR626G1892 Trochodendron aralioides HOM05D005404 ORTHO05D006623 5.9e-49 197.6 128 86.7
Peaxi162Scf00482g00049 Petunia axillaris HOM05D005404 ORTHO05D006623 7.7e-49 197.2 129 86.8
EL10Ac8g19776 Beta vulgaris HOM05D005404 ORTHO05D006623 1.7e-48 196.1 129 86.0
Glyma.08G082100 Glycine max HOM05D005404 ORTHO05D006623 2.9e-48 195.3 130 86.2
Sed0003587 Sechium edule HOM05D005404 ORTHO05D006623 2.9e-48 195.3 129 86.0
Potri.001G352600 Populus trichocarpa HOM05D005404 ORTHO05D006623 3.8e-48 194.9 129 86.0
MD16G1202800 Malus domestica HOM05D005404 ORTHO05D006623 6.5e-48 194.1 133 85.0
MELO3C007159.2 Cucumis melo HOM05D005404 ORTHO05D006623 1.1e-47 193.4 129 85.3
CsaV3_6G051470 Cucumis sativus L. HOM05D005404 ORTHO05D006623 1.1e-47 193.4 129 85.3
BcaB03g12183 Brassica carinata HOM05D005404 ORTHO05D006623 1.5e-47 193.0 133 85.7
Solyc02g071150.3 Solanum lycopersicum HOM05D005404 ORTHO05D006623 1.5e-47 193.0 129 85.3
Sopen02g020230 Solanum pennellii HOM05D005404 ORTHO05D006623 1.5e-47 193.0 129 85.3
MD05G1290500 Malus domestica HOM05D005404 ORTHO05D006623 1.9e-47 192.6 133 84.2
Sp1g25740 Schrenkiella parvula HOM05D005404 ORTHO05D006623 2.5e-47 192.2 132 85.6
DCAR_007905 Daucus carota HOM05D005404 ORTHO05D006623 4.2e-47 191.4 129 86.0
Glyma.05G127400 Glycine max HOM05D005404 ORTHO05D006623 4.2e-47 191.4 130 85.4
Lj4g0012372 Lotus japonicus HOM05D005404 ORTHO05D006623 4.2e-47 191.4 129 83.7
THA.LOC104812663 Tarenaya hassleriana HOM05D005404 ORTHO05D006623 4.2e-47 191.4 129 85.3
CiPaw.09G128300 Carya illinoinensis HOM05D005404 ORTHO05D006623 5.5e-47 191.0 128 85.9
Prupe.4G075200 Prunus persica HOM05D005404 ORTHO05D006623 5.5e-47 191.0 133 82.7
BcaB03g13855 Brassica carinata HOM05D005404 ORTHO05D006623 7.2e-47 190.7 132 84.8
Phvul.002G197500 Phaseolus vulgaris HOM05D005404 ORTHO05D006623 7.2e-47 190.7 129 83.7
BcaC01g00143 Brassica carinata HOM05D005404 ORTHO05D006623 9.4e-47 190.3 132 84.8
C05p28570 Brassica napus HOM05D005404 ORTHO05D006623 9.4e-47 190.3 129 83.7
Medtr4g094580 Medicago truncatula HOM05D005404 ORTHO05D006623 9.4e-47 190.3 130 84.6
BcaB07g32570 Brassica carinata HOM05D005404 ORTHO05D006623 1.2e-46 189.9 129 83.7
FAN21G0592 Fragaria x ananassa HOM05D005404 ORTHO05D006623 1.2e-46 189.9 132 84.1
Nitab4.5_0000206g0130 Nicotiana tabacum HOM05D005404 ORTHO05D006623 2.7e-46 188.7 129 82.9
TWI53G0717 Tripterygium wilfordii HOM05D005404 ORTHO05D006623 2.7e-46 188.7 131 84.0
BcaC06g35468 Brassica carinata HOM05D005404 ORTHO05D006623 3.6e-46 188.3 132 83.3
A08p24810 Brassica napus HOM05D003390 ORTHO05D004189 3.6e-46 188.3 131 84.7
Thhalv10009098m.g Eutrema salsugineum HOM05D005404 ORTHO05D006623 3.6e-46 188.3 132 84.1
BolC5t31581H Brassica oleracea HOM05D005404 ORTHO05D006623 4.7e-46 188.0 129 82.9
Lalb_Chr12g0208831 Lupinus albus HOM05D005404 ORTHO05D006623 4.7e-46 188.0 129 84.5
BcaC05g26997 Brassica carinata HOM05D005404 ORTHO05D006623 6.1e-46 187.6 129 82.9
Carub.0001s2809 Capsella rubella HOM05D005404 ORTHO05D006623 1.0e-45 186.8 129 83.7
Nn4g26481 Nelumbo nucifera HOM05D005404 ORTHO05D006623 1.0e-45 186.8 150 75.3
Sc05g0006520 Simmondsia chinensis HOM05D005404 ORTHO05D006623 1.8e-45 186.0 129 82.9
Atru.chr10.1368 Acer truncatum HOM05D005404 ORTHO05D006623 5.2e-45 184.5 129 83.7
CARHR029600 Cardamine hirsuta HOM05D005404 ORTHO05D006623 6.7e-45 184.1 132 81.8
COL.COLO4_07492 Corchorus olitorius HOM05D005404 ORTHO05D006623 8.8e-45 183.7 116 90.5
Os05g0547850 Oryza sativa ssp. japonica HOM05D005404 ORTHO05D006623 8.8e-45 183.7 129 81.4
GSVIVG01021395001 Vitis vinifera HOM05D005404 ORTHO05D006623 3.3e-44 181.8 116 89.7
Nn3g20867 Nelumbo nucifera HOM05D005404 ORTHO05D006623 5.7e-44 181.0 130 83.1
SGA_v2.0_scaffold333G49013 Striga asiatica HOM05D005404 ORTHO05D006623 7.5e-44 180.6 126 79.4
unitig_26.g10094 Utricularia gibba HOM05D005404 ORTHO05D006623 7.5e-44 180.6 127 78.7
MSTRG.16208 Avicennia marina HOM05D005404 ORTHO05D006623 9.7e-44 180.3 127 78.7
Rhsim02G0154900 Rhododendron simsii HOM05D005404 ORTHO05D006623 9.7e-44 180.3 116 89.7
Migut.H01386 Erythranthe guttata HOM05D005404 ORTHO05D006623 2.8e-43 178.7 128 79.7
BolC3t19881H Brassica oleracea HOM05D005404 ORTHO05D006623 3.7e-43 178.3 121 84.3
Cc00_g15980 Coffea canephora HOM05D005404 ORTHO05D006623 3.7e-43 178.3 116 87.9
BraA07t28813Z Brassica rapa HOM05D005404 ORTHO05D006623 4.8e-43 177.9 122 82.8
Sabra16G0231900 Salix brachista HOM05D005404 ORTHO05D006623 6.3e-43 177.6 161 68.3
A07p10200 Brassica napus HOM05D005404 ORTHO05D006623 8.2e-43 177.2 121 82.6
BolC7t42063H Brassica oleracea HOM05D005404 ORTHO05D006623 8.2e-43 177.2 122 82.0
BraA08t34436Z Brassica rapa HOM05D003390 ORTHO05D004189 8.2e-43 177.2 120 84.2
Actinidia39556 Actinidia chinensis HOM05D005404 ORTHO05D006623 1.1e-42 176.8 129 81.4
TAR627G1065 Trochodendron aralioides HOM05D005404 ORTHO05D006623 1.4e-42 176.4 117 85.5
Manes.17G066000 Manihot esculenta HOM05D005404 ORTHO05D006623 1.8e-42 176.0 129 80.6
ATR0681G149 Amborella trichopoda HOM05D005404 ORTHO05D006623 4.1e-42 174.9 114 86.8
Manes.15G118100 Manihot esculenta HOM05D005404 ORTHO05D006623 4.1e-42 174.9 129 80.6
Psat7g091480 Pisum sativum HOM05D005404 ORTHO05D006623 1.2e-41 173.3 116 84.5
Lsat_1_v5_gn_1_91580 Lactuca sativa HOM05D005404 ORTHO05D006623 1.6e-41 172.9 130 81.5
QL05p060078 Quercus lobata HOM05D005404 ORTHO05D006623 1.6e-41 172.9 128 78.9
Haze_05531 Corylus avellana HOM05D005404 ORTHO05D006623 2.7e-41 172.2 116 84.5
DCAR_003948 Daucus carota HOM05D005404 ORTHO05D006623 5.9e-41 171.0 117 86.3
CDE08G1548 Ceratophyllum demersum HOM05D005404 ORTHO05D006623 1.7e-40 169.5 112 86.6
FAN11G2394 Fragaria x ananassa HOM05D005404 ORTHO05D006623 2.2e-40 169.1 119 84.0
MBI07_g07833_MAGBIO Magnolia biondii HOM05D005404 ORTHO05D006623 1.1e-39 166.8 116 81.0
CDE02G1967 Ceratophyllum demersum HOM05D005404 ORTHO05D006623 3.2e-39 165.2 129 76.0
Dinv32291 Davidia involucrata HOM05D005404 ORTHO05D006623 9.4e-39 163.7 116 82.8
SalBow7G3345 Salvia bowleyana HOM05D005404 ORTHO05D006623 1.6e-38 162.9 126 74.6
ECA248G0679 Erigeron canadensis HOM05D005404 ORTHO05D006623 2.1e-38 162.5 129 76.0
RcHm_v2.0_Chr5g0013081 Rosa chinensis HOM05D005404 ORTHO05D006623 6.1e-38 161.0 132 77.3
AL1G43680 Arabidopsis lyrata HOM05D005404 ORTHO05D006623 2.3e-37 159.1 133 74.4
Zm00001eb294640 Zea mays HOM05D005404 ORTHO05D006623 3.0e-37 158.7 129 76.0
THA.LOC104814282 Tarenaya hassleriana HOM05D005404 ORTHO05D006623 6.8e-37 157.5 130 76.2
Hma1.2p1_0015F.1_g010240 Hydrangea macrophylla HOM05D005404 ORTHO05D006623 8.8e-37 157.1 152 65.8
Oeu012458.1 Olea europaea HOM05D005404 ORTHO05D006623 1.2e-36 156.8 126 73.8
FAN25G0636 Fragaria x ananassa HOM05D005404 ORTHO05D006623 2.6e-36 155.6 131 75.6
FAN25G2540 Fragaria x ananassa HOM05D005404 ORTHO05D006623 2.6e-36 155.6 131 75.6
Lj2A310T44 Lonicera japonica HOM05D005404 ORTHO05D006623 2.2e-35 152.5 116 79.3
CAN.G257.34 Capsicum annuum HOM05D005404 ORTHO05D006623 2.8e-35 152.1 128 71.1
TWI09G1218 Tripterygium wilfordii HOM05D005404 ORTHO05D006623 8.3e-35 150.6 112 79.5
Nitab4.5_0008782g0030 Nicotiana tabacum HOM05D005404 ORTHO05D006623 1.4e-34 149.8 128 71.9
FAN16G2304 Fragaria x ananassa HOM05D005404 ORTHO05D006623 1.2e-33 146.7 132 72.0
AT1G29850 Arabidopsis thaliana HOM05D005404 ORTHO05D006623 1.0e-32 143.7 132 70.5
AUR62027578 Chenopodium quinoa HOM05D005404 ORTHO05D006623 1.0e-32 143.7 132 70.5
PGSC0003DMG400003081 Solanum tuberosum HOM05D005404 ORTHO05D006623 5.0e-32 141.4 129 69.0
AUR62035781 Chenopodium quinoa HOM05D005404 ORTHO05D006623 9.5e-31 137.1 132 68.2
Aa31LG6G5780 Aethionema arabicum HOM05D005404 ORTHO05D006623 1.2e-30 136.7 95 82.1
MSTRG.14760 Avicennia marina HOM05D005404 ORTHO05D006623 1.2e-30 136.7 110 73.6
FvH4_3g06230 Fragaria vesca HOM05D005404 ORTHO05D006623 4.7e-30 134.8 119 73.1
Oeu052389.2 Olea europaea HOM05D005404 ORTHO05D006623 1.0e-29 133.7 142 62.0
Oeu046548.1 Olea europaea HOM05D005404 ORTHO05D006623 3.0e-29 132.1 114 69.3
Zm00001eb342640 Zea mays HOM05D005404 ORTHO05D006623 5.7e-28 127.9 131 63.4
C07p15720 Brassica napus HOM05D005404 ORTHO05D006623 1.3e-27 126.7 86 83.7
AUR62023445 Chenopodium quinoa HOM05D005404 ORTHO05D006623 2.2e-27 125.9 93 77.4
Peaxi162Scf00121g02445 Petunia axillaris HOM05D005404 ORTHO05D006623 2.4e-26 122.5 128 64.1
AagrBONN_evm.TU.Sc2ySwM_362.2923 Anthoceros agrestis HOM05D005404 ORTHO05D006623 7.0e-26 120.9 80 82.5
SMO358G0232 Selaginella moellendorffii HOM05D005404 ORTHO05D006623 7.0e-26 120.9 125 61.6
MD09G1183100 Malus domestica HOM05D005404 ORTHO05D006623 9.2e-26 120.6 82 85.4
TAR636G3446 Trochodendron aralioides HOM05D005404 ORTHO05D006623 5.9e-25 117.9 83 81.9
ClCG01G024320 Citrullus lanatus HOM05D005404 ORTHO05D006623 3.8e-24 115.2 129 58.1
Pp3c14_19320 Physcomitrium patens HOM05D005404 ORTHO05D006623 8.6e-24 114.0 134 57.5
Cpa.g.sc17.100 Carica papaya HOM05D005404 ORTHO05D006623 9.5e-23 110.5 66 92.4
arahy.Tifrunner.gnm1.ann1.JSLQ1D Arachis hypogaea HOM05D005404 ORTHO05D006623 8.0e-22 107.5 68 86.8
Mapoly0080s0013 Marchantia polymorpha HOM05D005404 ORTHO05D006623 1.5e-20 103.2 136 55.1
Os05g0546500 Oryza sativa ssp. japonica HOM05D005404 ORTHO05D006623 3.4e-20 102.1 70 81.4
CBR_g45965 Chara braunii HOM05D005404 ORTHO05D006623 7.5e-20 100.9 83 67.5
Nitab4.5_0010964g0060 Nicotiana tabacum HOM05D000728 ORTHO05D001474 1.7e-19 99.8 270 35.2
SEGI_04398 Sequoiadendron giganteum HOM05D005404 ORTHO05D006623 2.4e-18 95.9 68 79.4
Cre12.g557800 Chlamydomonas reinhardtii HOM05D005404 ORTHO05D006623 4.1e-18 95.1 120 52.5
arahy.Tifrunner.gnm1.ann1.HCY9BB Arachis hypogaea HOM05D005404 ORTHO05D006623 1.2e-17 93.6 60 85.0
A09p36640 Brassica napus HOM05D005404 ORTHO05D006623 3.5e-17 92.0 64 81.2
Nitab4.5_0003527g0030 Nicotiana tabacum HOM05D005404 ORTHO05D006623 1.1e-15 87.0 58 82.8
C03p76250 Brassica napus HOM05D005404 ORTHO05D006623 1.5e-15 86.7 54 90.7
PRCOL_00005423 Prasinoderma coloniale HOM05D005404 ORTHO05D006623 1.9e-15 86.3 87 55.2
HPP92_021556 Vanilla planifolia HOM05D000864 ORTHO05D001658 1.9e-15 86.3 61 75.4
HPP92_021557 Vanilla planifolia HOM05D005404 ORTHO05D006623 5.6e-15 84.7 54 87.0
CSS0048314 Camellia sinensis var. sinensis HOM05D005404 ORTHO05D006623 4.4e-12 75.1 75 68.0
Hund21505 Selenicereus undatus HOM05D005404 ORTHO05D006623 1.1e-10 70.5 110 45.5
Gohir.A08G088100 Gossypium hirsutum HOM05D005404 ORTHO05D006623 7.8e-09 64.3 48 79.2
Nn4g23354 Nelumbo nucifera HOM05D005404 ORTHO05D006623 1.6e-06 56.6 40 77.5


User provided reference genes

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