Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR042G2650 Punica granatum HOM05D002306 ORTHO05D006484 6.4e-42 173.7 90 100.0
Nn8g40946 Nelumbo nucifera HOM05D002306 ORTHO05D006484 3.2e-33 144.8 90 80.0
Haze_00198 Corylus avellana HOM05D002306 ORTHO05D005773 2.1e-32 142.1 88 80.7
Cfa016242 Carpinus fangiana HOM05D002306 ORTHO05D006484 2.7e-32 141.7 90 78.9
COL.COLO4_16787 Corchorus olitorius HOM05D002306 ORTHO05D006484 2.7e-32 141.7 87 81.6
Nn3g18952 Nelumbo nucifera HOM05D002306 ORTHO05D006484 3.5e-32 141.4 88 78.4
Prupe.2G312900 Prunus persica HOM05D002306 ORTHO05D006484 3.5e-32 141.4 87 80.5
FAN10G3342 Fragaria x ananassa HOM05D002306 ORTHO05D006484 1.7e-31 139.0 87 79.3
Medtr3g091850 Medicago truncatula HOM05D002306 ORTHO05D006484 1.7e-31 139.0 88 80.7
CANSAT21G2118 Cannabis sativa HOM05D002306 ORTHO05D006484 3.0e-31 138.3 86 80.2
Dinv29265 Davidia involucrata HOM05D002306 ORTHO05D006484 3.0e-31 138.3 90 75.6
Duzib084G1054 Durio zibethinus HOM05D002306 ORTHO05D006484 3.0e-31 138.3 87 78.2
QL09p008635 Quercus lobata HOM05D002306 ORTHO05D006484 3.0e-31 138.3 86 79.1
Sed0012841 Sechium edule HOM05D002306 ORTHO05D006484 5.1e-31 137.5 87 75.9
Thecc.03G200700 Theobroma cacao HOM05D002306 ORTHO05D006484 5.1e-31 137.5 87 78.2
TWI39G0647 Tripterygium wilfordii HOM05D002306 ORTHO05D006484 5.1e-31 137.5 83 80.7
Atru.chr1.2784 Acer truncatum HOM05D002306 ORTHO05D006484 8.6e-31 136.7 89 75.3
RcHm_v2.0_Chr1g0381471 Rosa chinensis HOM05D002306 ORTHO05D006484 1.1e-30 136.3 87 78.2
Actinidia08660 Actinidia chinensis HOM05D002306 ORTHO05D006484 1.5e-30 136.0 90 73.3
ECA232G1226 Erigeron canadensis HOM05D002306 ORTHO05D006484 1.5e-30 136.0 88 77.3
Manes.05G190300 Manihot esculenta HOM05D002306 ORTHO05D006484 1.5e-30 136.0 83 79.5
FAN10G1840 Fragaria x ananassa HOM05D002306 ORTHO05D006484 3.3e-30 134.8 87 78.2
Lj6g0020019 Lotus japonicus HOM05D002306 ORTHO05D006484 3.3e-30 134.8 87 80.5
CSS0043540 Camellia sinensis var. sinensis HOM05D002306 ORTHO05D006484 4.3e-30 134.4 90 72.2
vmacro06392 Vaccinium macrocarpon HOM05D002306 ORTHO05D006484 4.3e-30 134.4 86 76.7
Medtr1g007870 Medicago truncatula HOM05D002306 ORTHO05D006484 5.6e-30 134.0 88 77.3
Oeu037053.1 Olea europaea HOM05D002306 ORTHO05D006484 5.6e-30 134.0 82 79.3
Potri.015G011500 Populus trichocarpa HOM05D002306 ORTHO05D006484 5.6e-30 134.0 84 78.6
Gohir.A09G184900 Gossypium hirsutum HOM05D002306 ORTHO05D006484 7.3e-30 133.7 87 75.9
Phvul.001G057400 Phaseolus vulgaris HOM05D002306 ORTHO05D006484 9.5e-30 133.3 87 77.0
Sc13g0009850 Simmondsia chinensis HOM05D002306 ORTHO05D006484 9.5e-30 133.3 86 74.4
Gohir.D09G179800 Gossypium hirsutum HOM05D002306 ORTHO05D006484 1.6e-29 132.5 87 75.9
Gorai.006G201800 Gossypium raimondii HOM05D002306 ORTHO05D006484 1.6e-29 132.5 87 75.9
Lalb_Chr11g0066981 Lupinus albus HOM05D002306 ORTHO05D006484 1.6e-29 132.5 88 73.9
MD01G1222500 Malus domestica HOM05D002306 ORTHO05D006484 2.1e-29 132.1 87 75.9
MD07G1293100 Malus domestica HOM05D002306 ORTHO05D006484 2.1e-29 132.1 87 75.9
TPR.G33626 Trifolium pratense HOM05D002306 ORTHO05D006484 2.1e-29 132.1 88 76.1
ECA233G2756 Erigeron canadensis HOM05D002476 ORTHO05D006484 2.8e-29 131.7 88 73.9
Psat5g075320 Pisum sativum HOM05D002306 ORTHO05D006484 2.8e-29 131.7 88 75.0
Cc02_g01390 Coffea canephora HOM05D002306 ORTHO05D006484 3.6e-29 131.3 87 74.7
Eucgr.K00393 Eucalyptus grandis HOM05D002306 ORTHO05D006484 4.7e-29 131.0 94 73.4
Glyma.11G174073 Glycine max HOM05D002306 ORTHO05D006484 6.2e-29 130.6 87 77.0
Glyma.17G200500 Glycine max HOM05D002306 ORTHO05D006484 6.2e-29 130.6 87 77.0
Sabra12G0015400 Salix brachista HOM05D002306 ORTHO05D006484 8.1e-29 130.2 85 75.3
vmacro10128 Vaccinium macrocarpon HOM05D002306 ORTHO05D006484 1.1e-28 129.8 90 68.9
arahy.Tifrunner.gnm1.ann1.84THGE Arachis hypogaea HOM05D002306 ORTHO05D006484 1.4e-28 129.4 88 76.1
arahy.Tifrunner.gnm1.ann1.K9F3KZ Arachis hypogaea HOM05D002306 ORTHO05D006484 1.4e-28 129.4 88 76.1
GSVIVG01038565001 Vitis vinifera HOM05D002306 ORTHO05D006484 2.3e-28 128.6 88 70.5
Aqoxy5G04246 Aquilegia oxysepala HOM05D002306 ORTHO05D006484 3.1e-28 128.3 87 72.4
MELO3C008504.2 Cucumis melo HOM05D002306 ORTHO05D006484 3.1e-28 128.3 88 70.5
CsaV3_3G019760 Cucumis sativus L. HOM05D002306 ORTHO05D006484 3.1e-28 128.3 82 74.4
SGA_v2.0_scaffold44G16812 Striga asiatica HOM05D002306 ORTHO05D005773 3.1e-28 128.3 87 72.4
PSO135G0367 Papaver somniferum HOM05D002306 ORTHO05D006484 4.0e-28 127.9 86 75.6
PSO384G3554 Papaver somniferum HOM05D002306 ORTHO05D006484 4.0e-28 127.9 90 72.2
MSTRG.8645 Avicennia marina HOM05D002306 ORTHO05D006484 6.8e-28 127.1 85 71.8
CiPaw.05G197900 Carya illinoinensis HOM05D002306 ORTHO05D006484 6.8e-28 127.1 81 80.2
Ciclev10023672m.g Citrus clementina HOM05D002306 ORTHO05D006484 6.8e-28 127.1 88 70.5
Migut.F00201 Erythranthe guttata HOM05D002306 ORTHO05D006484 6.8e-28 127.1 87 70.1
Hund11652 Selenicereus undatus HOM05D002306 ORTHO05D006484 6.8e-28 127.1 86 74.4
TWI14G0402 Tripterygium wilfordii HOM05D002306 ORTHO05D006484 6.8e-28 127.1 88 75.0
FvH4_7g31970 Fragaria vesca HOM05D002306 ORTHO05D006484 8.9e-28 126.7 85 77.6
TPR.G12084 Trifolium pratense HOM05D002306 ORTHO05D006484 8.9e-28 126.7 86 75.6
arahy.Tifrunner.gnm1.ann1.CGD4UQ Arachis hypogaea HOM05D002306 ORTHO05D006484 1.2e-27 126.3 88 75.0
ClCG05G009020 Citrullus lanatus HOM05D002306 ORTHO05D006484 1.2e-27 126.3 88 68.2
Aqoxy3G03743 Aquilegia oxysepala HOM05D002306 ORTHO05D006484 2.0e-27 125.6 86 69.8
Ah.07g205530 Amaranthus hybridus HOM05D002306 ORTHO05D006484 2.6e-27 125.2 79 78.5
FAN06G3491 Fragaria x ananassa HOM05D002306 ORTHO05D006484 3.4e-27 124.8 81 79.0
Lsat_1_v5_gn_8_5361 Lactuca sativa HOM05D002306 ORTHO05D006484 7.5e-27 123.6 79 75.9
Rhsim03G0209800 Rhododendron simsii HOM05D002306 ORTHO05D006484 9.9e-27 123.2 81 77.8
Rhsim03G0210000 Rhododendron simsii HOM05D002306 ORTHO05D006484 9.9e-27 123.2 81 77.8
Rhsim03G0210100 Rhododendron simsii HOM05D002306 ORTHO05D006484 9.9e-27 123.2 81 77.8
CAN.G481.25 Capsicum annuum HOM05D002306 ORTHO05D006484 1.3e-26 122.9 83 74.7
EL10Ac3g05270 Beta vulgaris HOM05D002306 ORTHO05D006484 1.7e-26 122.5 81 79.0
PSO782G0677 Papaver somniferum HOM05D002306 ORTHO05D006484 1.7e-26 122.5 86 73.3
Solyc03g083020.3 Solanum lycopersicum HOM05D002306 ORTHO05D006484 1.7e-26 122.5 88 70.5
Sopen03g022830 Solanum pennellii HOM05D002306 ORTHO05D006484 1.7e-26 122.5 88 70.5
AUR62006081 Chenopodium quinoa HOM05D002306 ORTHO05D006484 3.7e-26 121.3 84 70.2
PGSC0003DMG402018530 Solanum tuberosum HOM05D002306 ORTHO05D006484 3.7e-26 121.3 83 73.5
MBI07_g24774_MAGBIO Magnolia biondii HOM05D002306 ORTHO05D006484 4.9e-26 120.9 81 71.6
THA.LOC104825151 Tarenaya hassleriana HOM05D002306 ORTHO05D006484 4.9e-26 120.9 82 74.4
VMungo0647G0954 Vigna mungo HOM05D002306 ORTHO05D006484 8.3e-26 120.2 81 77.8
A10p10530 Brassica napus HOM05D002306 ORTHO05D006484 1.1e-25 119.8 81 74.1
BraA10t43137Z Brassica rapa HOM05D002306 ORTHO05D006484 1.1e-25 119.8 81 74.1
CDE11G0760 Ceratophyllum demersum HOM05D002306 ORTHO05D006484 1.1e-25 119.8 82 72.0
Os02g0305800 Oryza sativa ssp. japonica HOM05D002306 ORTHO05D006484 1.1e-25 119.8 83 67.5
BcaC04g20513 Brassica carinata HOM05D002306 ORTHO05D006484 1.4e-25 119.4 81 74.1
C09p42750 Brassica napus HOM05D002306 ORTHO05D006484 1.4e-25 119.4 81 74.1
BolC9t57151H Brassica oleracea HOM05D002306 ORTHO05D006484 1.4e-25 119.4 81 74.1
Sp6g15200 Schrenkiella parvula HOM05D002306 ORTHO05D006484 1.4e-25 119.4 81 72.8
PSO170G5717 Papaver somniferum HOM05D002306 ORTHO05D006484 1.9e-25 119.0 89 68.5
unitig_8.g4777 Utricularia gibba HOM05D002306 ORTHO05D006484 1.9e-25 119.0 84 75.0
DCAR_008946 Daucus carota HOM05D002306 ORTHO05D006484 2.4e-25 118.6 81 71.6
AL8G27670 Arabidopsis lyrata HOM05D002306 ORTHO05D006484 3.2e-25 118.2 81 71.6
A03p15430 Brassica napus HOM05D002306 ORTHO05D006484 3.2e-25 118.2 81 70.4
BraA03t10832Z Brassica rapa HOM05D002306 ORTHO05D006484 3.2e-25 118.2 81 70.4
BraA03t10833Z Brassica rapa HOM05D002306 ORTHO05D006484 3.2e-25 118.2 81 70.4
Carub.0008s1324 Capsella rubella HOM05D002306 ORTHO05D006484 3.2e-25 118.2 81 71.6
ATR1127G174 Amborella trichopoda HOM05D002306 ORTHO05D006484 4.1e-25 117.9 81 72.8
AT5G53045 Arabidopsis thaliana HOM05D002306 ORTHO05D006484 4.1e-25 117.9 81 71.6
Ciclev10024526m.g Citrus clementina HOM05D002306 ORTHO05D006484 4.1e-25 117.9 88 69.3
Aa31LG3G9430 Aethionema arabicum HOM05D002306 ORTHO05D006484 9.2e-25 116.7 79 73.4
BcaB08g35664 Brassica carinata HOM05D002306 ORTHO05D006484 9.2e-25 116.7 81 71.6
Thhalv10022935m.g Eutrema salsugineum HOM05D002306 ORTHO05D006484 9.2e-25 116.7 81 70.4
HanXRQChr15g0485701 Helianthus annuus HOM05D002306 ORTHO05D006484 9.2e-25 116.7 81 72.8
Sabra15G0009400 Salix brachista HOM05D002306 ORTHO05D006484 9.2e-25 116.7 78 74.4
ATR0602G202 Amborella trichopoda HOM05D002306 ORTHO05D006484 1.6e-24 115.9 81 71.6
A03p15460 Brassica napus HOM05D002306 ORTHO05D006484 2.1e-24 115.5 81 67.9
BraA03t10836Z Brassica rapa HOM05D002306 ORTHO05D006484 2.1e-24 115.5 81 67.9
BraA03t10838Z Brassica rapa HOM05D002306 ORTHO05D006484 2.1e-24 115.5 81 67.9
BraA03t10841Z Brassica rapa HOM05D002306 ORTHO05D006484 2.1e-24 115.5 81 67.9
Ciclev10023496m.g Citrus clementina HOM05D002306 ORTHO05D006484 2.1e-24 115.5 88 68.2
Peaxi162Scf00740g00131 Petunia axillaris HOM05D002306 ORTHO05D006484 2.1e-24 115.5 88 69.3
CSS0043767 Camellia sinensis var. sinensis HOM05D002306 ORTHO05D006484 3.5e-24 114.8 81 72.8
CARHR266060 Cardamine hirsuta HOM05D002306 ORTHO05D006484 3.5e-24 114.8 81 69.1
Duzib068G0867 Durio zibethinus HOM05D002306 ORTHO05D006484 3.5e-24 114.8 95 67.4
Thhalv10015123m.g Eutrema salsugineum HOM05D002306 ORTHO05D006484 6.0e-24 114.0 81 70.4
arahy.Tifrunner.gnm1.ann1.XWYM96 Arachis hypogaea HOM05D002476 ORTHO05D002652 7.8e-24 113.6 89 70.8
BcaC01g06216 Brassica carinata HOM05D002306 ORTHO05D006484 3.0e-23 111.7 83 67.5
C03p18020 Brassica napus HOM05D002306 ORTHO05D006484 3.0e-23 111.7 83 67.5
BolC3t14207H Brassica oleracea HOM05D002306 ORTHO05D006484 3.0e-23 111.7 83 67.5
Psat6g034920 Pisum sativum HOM05D002306 ORTHO05D006484 3.0e-23 111.7 76 76.3
Lj1g0020624 Lotus japonicus HOM05D002306 ORTHO05D006484 3.9e-23 111.3 80 73.8
Potri.012G017000 Populus trichocarpa HOM05D002306 ORTHO05D006484 5.1e-23 110.9 73 78.1
AUR62019413 Chenopodium quinoa HOM05D002306 ORTHO05D006484 1.9e-22 109.0 75 74.7
HPP92_020719 Vanilla planifolia HOM05D002306 ORTHO05D006484 5.6e-22 107.5 81 61.7
Nitab4.5_0000548g0070 Nicotiana tabacum HOM05D002306 ORTHO05D006484 9.5e-22 106.7 71 78.9
THA.LOC104803913 Tarenaya hassleriana HOM05D002306 ORTHO05D006484 9.5e-22 106.7 76 73.7
Lsat_1_v5_gn_9_49781 Lactuca sativa HOM05D002306 ORTHO05D006484 2.1e-21 105.5 89 62.9
CSS0003606 Camellia sinensis var. sinensis HOM05D002306 ORTHO05D006484 3.1e-20 101.7 83 66.3
Glyma.14G131800 Glycine max HOM05D002306 ORTHO05D006484 1.5e-19 99.4 78 70.5
SGA_v2.0_scaffold192G40528 Striga asiatica HOM05D005626 ORTHO05D007032 4.4e-19 97.8 73 71.2
Pp3c15_21670 Physcomitrium patens HOM05D002306 ORTHO05D006484 4.9e-18 94.4 77 62.3
AagrBONN_evm.TU.Sc2ySwM_228.5884 Anthoceros agrestis HOM05D002306 ORTHO05D006484 1.9e-17 92.4 82 62.2
SMO351G0263 Selaginella moellendorffii HOM05D002306 ORTHO05D006484 9.2e-17 90.1 77 62.3
Mapoly0129s0038 Marchantia polymorpha HOM05D002306 ORTHO05D006484 2.7e-16 88.6 78 55.1
AagrBONN_evm.TU.Sc2ySwM_228.5887 Anthoceros agrestis HOM05D002306 ORTHO05D006484 3.5e-16 88.2 77 64.9
Dinv35345 Davidia involucrata HOM05D002306 ORTHO05D006484 4.6e-16 87.8 54 75.9
BcaB01g04219 Brassica carinata HOM05D002306 ORTHO05D006484 2.5e-14 82.0 81 56.8
Ciclev10023204m.g Citrus clementina HOM05D002306 ORTHO05D006484 4.3e-14 81.3 59 64.4
Os02g0306250 Oryza sativa ssp. japonica HOM05D002306 ORTHO05D006484 2.8e-13 78.6 51 72.5
Os08g0534400 Oryza sativa ssp. japonica HOM05D002306 ORTHO05D006484 2.8e-13 78.6 51 72.5
CBR_g50381 Chara braunii HOM05D002306 ORTHO05D006484 8.1e-13 77.0 80 51.2
Rhsim09G0206300 Rhododendron simsii HOM05D002306 ORTHO05D006484 6.9e-12 73.9 48 68.8
Zm00001eb152100 Zea mays HOM05D002306 ORTHO05D006484 2.6e-11 72.0 50 68.0
Glyma.14G130501 Glycine max HOM05D002306 ORTHO05D006484 3.0e-07 58.5 38 76.3


User provided reference genes

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