Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR042G2204 Punica granatum HOM05D005820 ORTHO05D007116 0.0e+00 1412.9 710 100.0
CiPaw.05G212600 Carya illinoinensis HOM05D005820 ORTHO05D007116 7.9e-212 741.1 728 54.1
Gorai.003G057900 Gossypium raimondii HOM05D005820 ORTHO05D007116 7.4e-210 734.6 717 54.4
Gohir.D03G055100 Gossypium hirsutum HOM05D005820 ORTHO05D007116 3.7e-209 732.3 717 54.1
Cfa016076 Carpinus fangiana HOM05D005820 ORTHO05D007116 4.5e-207 725.3 725 53.5
Potri.013G077200 Populus trichocarpa HOM05D005820 ORTHO05D007116 1.3e-206 723.8 728 53.4
QL09p020654 Quercus lobata HOM05D005820 ORTHO05D007116 3.8e-206 722.2 739 53.3
Gohir.A02G125300 Gossypium hirsutum HOM05D005820 ORTHO05D007116 2.3e-203 713.0 652 56.9
Atru.chr12.1871 Acer truncatum HOM05D005820 ORTHO05D007116 8.7e-203 711.1 742 52.8
TAR633G0012 Trochodendron aralioides HOM05D005820 ORTHO05D007116 2.5e-202 709.5 714 53.4
Atru.chr13.1435 Acer truncatum HOM05D005820 ORTHO05D007116 9.6e-202 707.6 744 53.5
TWI53G1480 Tripterygium wilfordii HOM05D005820 ORTHO05D007116 2.1e-201 706.4 745 52.3
TAR365G1123 Trochodendron aralioides HOM05D005820 ORTHO05D007116 8.2e-201 704.5 714 52.2
TAR365G1018 Trochodendron aralioides HOM05D005820 ORTHO05D007116 3.1e-200 702.6 702 52.7
Nn3g21157 Nelumbo nucifera HOM05D005820 ORTHO05D007116 5.9e-199 698.4 740 51.1
Eucgr.A02992 Eucalyptus grandis HOM05D005820 ORTHO05D007116 4.6e-196 688.7 744 52.4
CSS0036845 Camellia sinensis var. sinensis HOM05D005820 ORTHO05D007116 3.0e-195 686.0 726 52.5
Duzib106G1003 Durio zibethinus HOM05D005820 ORTHO05D007116 2.8e-193 679.5 735 52.1
DCAR_020431 Daucus carota HOM05D005820 ORTHO05D007116 7.2e-189 664.8 708 50.8
Thecc.05G222900 Theobroma cacao HOM05D005820 ORTHO05D007116 1.2e-188 664.1 695 52.5
COL.COLO4_15131 Corchorus olitorius HOM05D005820 ORTHO05D007116 1.5e-186 657.1 731 50.1
Aqoxy2G01900 Aquilegia oxysepala HOM05D005820 ORTHO05D007116 3.7e-185 652.5 736 49.3
CsaV3_5G005010 Cucumis sativus L. HOM05D005820 ORTHO05D007116 3.4e-183 646.0 720 50.0
MELO3C005455.2 Cucumis melo HOM05D005820 ORTHO05D007116 3.8e-182 642.5 720 49.9
Sp6g27470 Schrenkiella parvula HOM05D005820 ORTHO05D007116 7.2e-181 638.3 711 48.9
Sed0005542 Sechium edule HOM05D005820 ORTHO05D007116 1.2e-180 637.5 731 49.0
Haze_00369 Corylus avellana HOM05D005820 ORTHO05D007116 2.3e-179 633.3 794 46.1
FvH4_7g34260 Fragaria vesca HOM05D005820 ORTHO05D007116 3.0e-179 632.9 733 48.8
THA.LOC104821161 Tarenaya hassleriana HOM05D005820 ORTHO05D007116 3.0e-179 632.9 729 46.9
Thhalv10012783m.g Eutrema salsugineum HOM05D005820 ORTHO05D007116 1.5e-178 630.6 710 48.2
RcHm_v2.0_Chr1g0384611 Rosa chinensis HOM05D005820 ORTHO05D007116 1.5e-178 630.6 738 48.2
FAN01G2368 Fragaria x ananassa HOM05D005820 ORTHO05D007116 4.4e-178 629.0 733 49.1
CANSAT54G2180 Cannabis sativa HOM05D005820 ORTHO05D007116 2.2e-177 626.7 714 49.0
C09p60450 Brassica napus HOM05D005820 ORTHO05D007116 3.7e-177 625.9 706 47.6
BraA10t44315Z Brassica rapa HOM05D005820 ORTHO05D007116 1.2e-175 620.9 706 47.7
Glyma.12G014600 Glycine max HOM05D005820 ORTHO05D007116 3.5e-175 619.4 741 47.4
Lj3g0016493 Lotus japonicus HOM05D005820 ORTHO05D007116 3.5e-175 619.4 743 47.1
AL6G27690 Arabidopsis lyrata HOM05D005820 ORTHO05D007116 4.5e-175 619.0 715 47.3
A10p22530 Brassica napus HOM05D005820 ORTHO05D007116 1.7e-174 617.1 703 47.5
Carub.0006s1489 Capsella rubella HOM05D005820 ORTHO05D007116 5.0e-174 615.5 709 47.5
FAN03G2216 Fragaria x ananassa HOM05D005820 ORTHO05D007116 6.5e-174 615.1 743 48.3
MD07G1032700 Malus domestica HOM05D005820 ORTHO05D007116 7.2e-173 611.7 736 48.1
PSO339G0775 Papaver somniferum HOM05D005820 ORTHO05D007116 9.4e-173 611.3 761 45.3
Phvul.011G017500 Phaseolus vulgaris HOM05D005820 ORTHO05D007116 1.2e-172 610.9 726 47.2
VMungo1127G1342 Vigna mungo HOM05D005820 ORTHO05D007116 8.0e-172 608.2 735 46.4
AUR62033087 Chenopodium quinoa HOM05D005820 ORTHO05D007116 1.8e-171 607.1 700 47.7
PSO384G2364 Papaver somniferum HOM05D005820 ORTHO05D007116 1.5e-170 604.0 793 44.1
Actinidia08766 Actinidia chinensis HOM05D005820 ORTHO05D007116 2.6e-170 603.2 669 49.3
PSO210G4891 Papaver somniferum HOM05D005820 ORTHO05D007116 1.7e-169 600.5 771 44.7
BolC9t58877H Brassica oleracea HOM05D005820 ORTHO05D007116 3.1e-168 596.3 760 44.3
vmacro06371 Vaccinium macrocarpon HOM05D005820 ORTHO05D007116 2.7e-167 593.2 750 45.2
Sopen12g007200 Solanum pennellii HOM05D005820 ORTHO05D007116 4.5e-167 592.4 723 45.8
Solyc12g013880.2 Solanum lycopersicum HOM05D005820 ORTHO05D007116 1.7e-166 590.5 726 45.3
ECA233G1554 Erigeron canadensis HOM05D005820 ORTHO05D007116 2.2e-166 590.1 721 46.5
Aa31LG11G12940 Aethionema arabicum HOM05D005820 ORTHO05D007116 1.1e-165 587.8 756 44.3
HanXRQChr15g0492741 Helianthus annuus HOM05D005820 ORTHO05D007116 1.9e-165 587.0 720 46.7
Prupe.2G329300 Prunus persica HOM05D005820 ORTHO05D007116 2.5e-165 586.6 710 46.8
ECA232G1869 Erigeron canadensis HOM05D005820 ORTHO05D007116 1.2e-164 584.3 723 46.6
Medtr5g082610 Medicago truncatula HOM05D005820 ORTHO05D007116 1.6e-164 583.9 726 46.1
Peaxi162Scf00046g02624 Petunia axillaris HOM05D005820 ORTHO05D007116 4.7e-164 582.4 724 44.9
EL10Ac2g03131 Beta vulgaris HOM05D005820 ORTHO05D007116 1.0e-163 581.3 695 46.8
EL10Ac4g08387 Beta vulgaris HOM05D005820 ORTHO05D007116 1.0e-163 581.3 695 46.9
AT5G16690 Arabidopsis thaliana HOM05D005820 ORTHO05D007116 5.2e-163 578.9 642 48.1
TPR.G19809 Trifolium pratense HOM05D005820 ORTHO05D007116 2.4e-160 570.1 643 48.7
Migut.J00550 Erythranthe guttata HOM05D005820 ORTHO05D007116 1.6e-159 567.4 742 44.5
MSTRG.19155 Avicennia marina HOM05D005820 ORTHO05D007116 3.5e-159 566.2 730 44.5
Cc10_g10830 Coffea canephora HOM05D005820 ORTHO05D007116 3.8e-158 562.8 728 44.2
Manes.08G160700 Manihot esculenta HOM05D005820 ORTHO05D007116 6.5e-158 562.0 607 51.7
CARHR196510 Cardamine hirsuta HOM05D005820 ORTHO05D007116 3.2e-157 559.7 710 45.1
FAN10G1332 Fragaria x ananassa HOM05D005820 ORTHO05D007116 7.2e-157 558.5 682 47.2
Rhsim03G0224500 Rhododendron simsii HOM05D005820 ORTHO05D007116 7.2e-157 558.5 756 44.0
SGA_v2.0_scaffold75G24867 Striga asiatica HOM05D005820 ORTHO05D007116 1.0e-155 554.7 717 44.8
BcaB08g36827 Brassica carinata HOM05D005820 ORTHO05D007116 2.6e-154 550.1 691 45.2
Lsat_1_v5_gn_9_46201 Lactuca sativa HOM05D005820 ORTHO05D007116 3.7e-153 546.2 724 43.6
Os10g0402200 Oryza sativa ssp. japonica HOM05D005820 ORTHO05D007116 3.7e-153 546.2 718 41.9
ATR0829G080 Amborella trichopoda HOM05D005820 ORTHO05D007116 4.1e-152 542.7 691 44.7
Nitab4.5_0012358g0010 Nicotiana tabacum HOM05D005820 ORTHO05D007116 4.4e-146 522.7 726 42.8
Zm00001eb031810 Zea mays HOM05D005820 ORTHO05D007116 3.7e-145 519.6 726 40.9
HPP92_000954 Vanilla planifolia HOM05D005820 ORTHO05D007116 9.5e-141 505.0 720 42.2
CDE02G0417 Ceratophyllum demersum HOM05D005820 ORTHO05D007116 6.2e-132 475.7 685 41.3
Lalb_Chr01g0000781 Lupinus albus HOM05D005820 ORTHO05D007116 2.8e-124 450.3 582 44.2
Sc13g0011020 Simmondsia chinensis HOM05D005820 ORTHO05D007116 1.3e-121 441.4 527 46.5
ClCG01G004810 Citrullus lanatus HOM05D005820 ORTHO05D007116 4.0e-115 419.9 473 51.4
AUR62042764 Chenopodium quinoa HOM05D005820 ORTHO05D007116 3.4e-114 416.8 579 42.8
Nitab4.5_0010710g0030 Nicotiana tabacum HOM05D005820 ORTHO05D007116 1.0e-110 405.2 568 43.0
unitig_749.g14271 Utricularia gibba HOM05D005820 ORTHO05D007116 2.5e-109 400.6 717 35.8
Psat5g135040 Pisum sativum HOM05D005820 ORTHO05D007116 9.6e-109 398.7 508 44.7
Sabra13G0066100 Salix brachista HOM05D005820 ORTHO05D007116 2.1e-108 397.5 349 59.6
Hma1.2p1_0419F.1_g149510 Hydrangea macrophylla HOM05D005820 ORTHO05D007116 8.1e-108 395.6 425 51.1
CAN.G103.20 Capsicum annuum HOM05D005820 ORTHO05D007116 6.9e-107 392.5 574 41.8
Ciclev10033588m.g Citrus clementina HOM05D005820 ORTHO05D007116 1.4e-104 384.8 346 59.8
PSO170G6050 Papaver somniferum HOM05D005820 ORTHO05D007116 9.9e-98 362.1 432 46.8
Ca_03104_v3 Cicer arietinum L. HOM05D005820 ORTHO05D007116 2.1e-95 354.4 411 47.4
COL.COLO4_22345 Corchorus olitorius HOM05D005820 ORTHO05D007116 2.0e-90 337.8 380 50.3
arahy.Tifrunner.gnm1.ann1.9S7XN2 Arachis hypogaea HOM05D005820 ORTHO05D007116 4.2e-88 330.1 371 49.3
SalBow3G3950 Salvia bowleyana HOM05D005820 ORTHO05D007116 5.5e-88 329.7 512 40.0
AagrBONN_evm.TU.Sc2ySwM_368.2608 Anthoceros agrestis HOM05D005820 ORTHO05D007116 7.1e-88 329.3 695 31.4
Hma1.2p1_0419F.1_g149500 Hydrangea macrophylla HOM05D005820 ORTHO05D007116 3.2e-80 303.9 283 56.9
PGSC0003DMG402015362 Solanum tuberosum HOM05D005820 ORTHO05D007116 1.6e-79 301.6 340 49.1
arahy.Tifrunner.gnm1.ann1.86ZX86 Arachis hypogaea HOM05D005820 ORTHO05D007116 4.3e-77 293.5 364 45.3
Mapoly0140s0032 Marchantia polymorpha HOM05D005820 ORTHO05D007116 7.4e-77 292.7 787 27.8
SHI15005 Sapria himalayana HOM05D005820 ORTHO05D007116 9.7e-77 292.4 299 50.8
Pp3c16_7630 Physcomitrium patens HOM05D005820 ORTHO05D007116 7.7e-74 282.7 858 27.0
PGSC0003DMG401015362 Solanum tuberosum HOM05D005820 ORTHO05D007116 7.7e-74 282.7 322 44.7
SMO203G0218 Selaginella moellendorffii HOM05D005820 ORTHO05D007116 1.6e-71 275.0 686 29.2
MD01G1239300 Malus domestica HOM05D005820 ORTHO05D007116 2.4e-67 261.2 490 36.7
Cpa.g.sc43.140 Carica papaya HOM05D005820 ORTHO05D007116 3.0e-62 244.2 237 52.7
Lj3A884T58 Lonicera japonica HOM05D005820 ORTHO05D007116 2.6e-61 241.1 236 54.7
Ciclev10032799m.g Citrus clementina HOM05D005820 ORTHO05D007116 1.1e-56 225.7 196 58.2
Oeu001352.2 Olea europaea HOM05D005820 ORTHO05D007116 1.4e-51 208.8 259 45.2
Cpa.g.sc43.143 Carica papaya HOM05D005820 ORTHO05D007116 1.1e-48 199.1 235 48.1
arahy.Tifrunner.gnm1.ann1.9KL91U Arachis hypogaea HOM05D005820 ORTHO05D007116 3.6e-47 194.1 684 26.9
Lj3A884T57 Lonicera japonica HOM05D005820 ORTHO05D007116 5.7e-45 186.8 266 43.2
arahy.Tifrunner.gnm1.ann1.CH4JFK Arachis hypogaea HOM05D005820 ORTHO05D007116 7.5e-45 186.4 692 26.6
CAN.G824.56 Capsicum annuum HOM05D005820 ORTHO05D007116 1.3e-44 185.7 157 56.1
Oeu046340.1 Olea europaea HOM05D005820 ORTHO05D007116 2.2e-44 184.9 160 58.8
Lalb_Chr01g0000771 Lupinus albus HOM05D005820 ORTHO05D007116 1.4e-43 182.2 158 56.3
CBR_g52284 Chara braunii HOM05D005820 ORTHO05D007116 2.2e-36 158.3 890 20.3
Nitab4.5_0010710g0040 Nicotiana tabacum HOM05D005820 ORTHO05D007116 3.7e-36 157.5 137 56.2
AUR62022348 Chenopodium quinoa HOM05D005820 ORTHO05D007116 3.2e-27 127.9 97 62.9
Hma1.2p1_0419F.1_g149520 Hydrangea macrophylla HOM05D005820 ORTHO05D007116 3.3e-24 117.9 120 47.5
SEGI_39455 Sequoiadendron giganteum HOM05D005820 ORTHO05D007116 3.9e-17 94.4 163 36.8
CAN.G557.3 Capsicum annuum HOM05D005820 ORTHO05D007116 7.3e-16 90.1 147 42.2
CAN.G1793.2 Capsicum annuum HOM05D005820 ORTHO05D007116 9.5e-08 63.2 164 28.0
SHI15006 Sapria himalayana HOM05D005820 ORTHO05D007116 6.2e-07 60.5 180 27.8
CAN.G159.6 Capsicum annuum HOM05D001691 ORTHO05D007116 1.1e-06 59.7 131 34.4
Ah.10g032150 Amaranthus hybridus HOM05D005820 ORTHO05D007116 5.2e-06 57.4 272 24.6
COL.COLO4_37046 Corchorus olitorius HOM05D005820 ORTHO05D007116 6.8e-06 57.0 35 68.6


User provided reference genes

Program Settings