Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR042G1688 Punica granatum HOM05D004222 ORTHO05D004982 6.9e-81 303.9 152 100.0
PGR031G1684 Punica granatum HOM05D004222 ORTHO05D004982 7.6e-64 247.3 151 82.1
Dinv15742 Davidia involucrata HOM05D004222 ORTHO05D004982 1.7e-63 246.1 152 79.6
Manes.11G019600 Manihot esculenta HOM05D004222 ORTHO05D004982 8.5e-63 243.8 152 79.6
Eucgr.G03389 Eucalyptus grandis HOM05D004222 ORTHO05D004982 1.9e-62 242.7 151 78.1
Duzib235G1272 Durio zibethinus HOM05D004222 ORTHO05D004982 3.2e-62 241.9 152 78.3
RcHm_v2.0_Chr2g0145741 Rosa chinensis HOM05D004222 ORTHO05D004982 3.2e-62 241.9 151 79.5
Rhsim08G0239600 Rhododendron simsii HOM05D004222 ORTHO05D004982 4.2e-62 241.5 150 78.0
Cfa003517 Carpinus fangiana HOM05D004222 ORTHO05D004982 5.5e-62 241.1 152 77.0
Haze_16054 Corylus avellana HOM05D004222 ORTHO05D004982 5.5e-62 241.1 152 77.0
Eucgr.H02488 Eucalyptus grandis HOM05D004222 ORTHO05D004982 7.2e-62 240.7 151 78.8
Gorai.011G059100 Gossypium raimondii HOM05D004222 ORTHO05D004982 9.3e-62 240.4 152 78.3
CiPaw.01G218100 Carya illinoinensis HOM05D004222 ORTHO05D004982 1.6e-61 239.6 151 74.8
Manes.04G145400 Manihot esculenta HOM05D004222 ORTHO05D004982 2.7e-61 238.8 152 75.7
QL05p004213 Quercus lobata HOM05D004222 ORTHO05D004982 2.7e-61 238.8 153 77.1
Sabra01G0142300 Salix brachista HOM05D004222 ORTHO05D004982 3.6e-61 238.4 152 78.3
Actinidia21792 Actinidia chinensis HOM05D004222 ORTHO05D004982 4.6e-61 238.0 151 76.2
Gohir.A10G053600 Gossypium hirsutum HOM05D004222 ORTHO05D004982 4.6e-61 238.0 152 77.6
Gohir.D10G055400 Gossypium hirsutum HOM05D004222 ORTHO05D004982 7.9e-61 237.3 152 77.6
Potri.001G168300 Populus trichocarpa HOM05D004222 ORTHO05D004982 7.9e-61 237.3 152 77.6
CSS0031925 Camellia sinensis var. sinensis HOM05D004222 ORTHO05D004982 1.0e-60 236.9 150 76.7
Rhsim01G0228800 Rhododendron simsii HOM05D004222 ORTHO05D004982 1.8e-60 236.1 150 76.7
arahy.Tifrunner.gnm1.ann1.J7IGQN Arachis hypogaea HOM05D004222 ORTHO05D004982 3.0e-60 235.3 153 73.2
arahy.Tifrunner.gnm1.ann1.M5IJ04 Arachis hypogaea HOM05D004222 ORTHO05D004982 3.0e-60 235.3 153 73.2
MD09G1181700 Malus domestica HOM05D004222 ORTHO05D004982 3.0e-60 235.3 143 81.1
TWI31G0208 Tripterygium wilfordii HOM05D004222 ORTHO05D004982 3.0e-60 235.3 148 75.0
Dinv37865 Davidia involucrata HOM05D004222 ORTHO05D004982 3.9e-60 235.0 149 76.5
Actinidia32191 Actinidia chinensis HOM05D004222 ORTHO05D004982 5.1e-60 234.6 149 77.2
FAN09G4904 Fragaria x ananassa HOM05D004222 ORTHO05D004982 5.1e-60 234.6 151 77.5
Sc16g0009040 Simmondsia chinensis HOM05D004222 ORTHO05D004982 5.1e-60 234.6 152 75.0
FvH4_6g34870 Fragaria vesca HOM05D004222 ORTHO05D004982 6.7e-60 234.2 151 77.5
FAN14G1002 Fragaria x ananassa HOM05D004222 ORTHO05D004982 6.7e-60 234.2 151 77.5
Glyma.07G236200 Glycine max HOM05D004222 ORTHO05D004982 6.7e-60 234.2 153 73.2
vmacro16353 Vaccinium macrocarpon HOM05D004222 ORTHO05D004982 6.7e-60 234.2 150 77.3
Hma1.2p1_0074F.1_g038830 Hydrangea macrophylla HOM05D004222 ORTHO05D004982 8.7e-60 233.8 151 73.5
Hma1.2p1_3000F.1_g331525 Hydrangea macrophylla HOM05D004222 ORTHO05D004982 8.7e-60 233.8 151 73.5
Glyma.17G037200 Glycine max HOM05D004222 ORTHO05D004982 1.1e-59 233.4 153 73.2
FAN02G1508 Fragaria x ananassa HOM05D004222 ORTHO05D004982 4.3e-59 231.5 151 76.8
vmacro15039 Vaccinium macrocarpon HOM05D004222 ORTHO05D004982 5.7e-59 231.1 149 74.5
Atru.chr1.3997 Acer truncatum HOM05D004222 ORTHO05D004982 7.4e-59 230.7 152 75.7
GSVIVG01016750001 Vitis vinifera HOM05D004222 ORTHO05D004982 7.4e-59 230.7 144 77.8
Lalb_Chr13g0298711 Lupinus albus HOM05D004222 ORTHO05D004982 9.7e-59 230.3 153 73.2
DCAR_023344 Daucus carota HOM05D004222 ORTHO05D004982 1.3e-58 229.9 150 72.7
ClCG09G000990 Citrullus lanatus HOM05D004222 ORTHO05D004982 2.2e-58 229.2 146 76.0
DCAR_002631 Daucus carota HOM05D004222 ORTHO05D004982 2.2e-58 229.2 150 74.0
Ca_21404_v3 Cicer arietinum L. HOM05D004222 ORTHO05D004982 2.8e-58 228.8 153 71.9
Ca_21419_v3 Cicer arietinum L. HOM05D004222 ORTHO05D004982 2.8e-58 228.8 153 71.9
CiPaw.02G135300 Carya illinoinensis HOM05D004222 ORTHO05D004982 3.7e-58 228.4 152 75.0
AUR62006751 Chenopodium quinoa HOM05D004222 ORTHO05D004982 3.7e-58 228.4 145 76.6
Thecc.06G121100 Theobroma cacao HOM05D004222 ORTHO05D004982 4.8e-58 228.0 152 73.7
MELO3C024352.2 Cucumis melo HOM05D004222 ORTHO05D004982 6.3e-58 227.6 147 74.8
TAR383G0284 Trochodendron aralioides HOM05D004222 ORTHO05D004982 8.2e-58 227.3 149 75.2
AUR62000395 Chenopodium quinoa HOM05D004222 ORTHO05D004982 1.1e-57 226.9 151 74.8
TWI75G1350 Tripterygium wilfordii HOM05D004222 ORTHO05D004982 1.4e-57 226.5 147 73.5
EL10Ac4g09456 Beta vulgaris HOM05D004222 ORTHO05D004982 1.8e-57 226.1 151 72.8
CsaV3_7G034430 Cucumis sativus L. HOM05D004222 ORTHO05D004982 1.8e-57 226.1 147 74.1
Phvul.003G118200 Phaseolus vulgaris HOM05D004222 ORTHO05D004982 1.8e-57 226.1 153 71.2
Sed0002362 Sechium edule HOM05D004222 ORTHO05D004982 1.8e-57 226.1 146 75.3
Prupe.3G039800 Prunus persica HOM05D004222 ORTHO05D004982 2.4e-57 225.7 138 79.7
Lj9A532G68 Lonicera japonica HOM05D004222 ORTHO05D004982 5.3e-57 224.6 152 72.4
Lj9C524T6 Lonicera japonica HOM05D004222 ORTHO05D004982 5.3e-57 224.6 152 72.4
Ciclev10032895m.g Citrus clementina HOM05D004222 ORTHO05D004982 6.9e-57 224.2 152 73.7
COL.COLO4_30749 Corchorus olitorius HOM05D004222 ORTHO05D004982 6.9e-57 224.2 153 73.9
Lj4g0027352 Lotus japonicus HOM05D004222 ORTHO05D004982 6.9e-57 224.2 153 71.9
Oeu026248.1 Olea europaea HOM05D004222 ORTHO05D004982 2.0e-56 222.6 153 71.2
Lsat_1_v5_gn_4_74980 Lactuca sativa HOM05D004222 ORTHO05D004982 2.6e-56 222.2 144 75.7
Nitab4.5_0003780g0070 Nicotiana tabacum HOM05D004222 ORTHO05D004982 2.6e-56 222.2 152 73.0
Nitab4.5_0006737g0050 Nicotiana tabacum HOM05D004222 ORTHO05D004982 2.6e-56 222.2 155 74.8
CAN.G786.39 Capsicum annuum HOM05D004222 ORTHO05D004982 3.4e-56 221.9 152 73.0
Ciclev10026608m.g Citrus clementina HOM05D004222 ORTHO05D004982 4.5e-56 221.5 144 75.0
PSO135G0791 Papaver somniferum HOM05D004222 ORTHO05D004982 4.5e-56 221.5 153 73.2
TAR626G0656 Trochodendron aralioides HOM05D004222 ORTHO05D004982 4.5e-56 221.5 142 77.5
Sp1g40590 Schrenkiella parvula HOM05D004222 ORTHO05D004982 5.9e-56 221.1 152 71.7
BcaC01g01437 Brassica carinata HOM05D004222 ORTHO05D004982 7.7e-56 220.7 152 71.1
C03p92020 Brassica napus HOM05D004222 ORTHO05D004982 7.7e-56 220.7 152 71.1
Thhalv10012402m.g Eutrema salsugineum HOM05D004222 ORTHO05D004982 7.7e-56 220.7 149 72.5
BolC3t21520H Brassica oleracea HOM05D004222 ORTHO05D004982 1.0e-55 220.3 152 71.1
Glyma.02G277500 Glycine max HOM05D004222 ORTHO05D004982 1.0e-55 220.3 155 69.0
Solyc04g010090.3 Solanum lycopersicum HOM05D004222 ORTHO05D004982 1.0e-55 220.3 155 74.2
Sopen04g005230 Solanum pennellii HOM05D004222 ORTHO05D004982 1.0e-55 220.3 155 74.2
Ah.04g158670 Amaranthus hybridus HOM05D004222 ORTHO05D004982 1.3e-55 219.9 145 73.8
MSTRG.9521 Avicennia marina HOM05D004222 ORTHO05D004982 1.3e-55 219.9 145 77.9
CANSAT64G2454 Cannabis sativa HOM05D004222 ORTHO05D004982 1.3e-55 219.9 140 79.3
Cc02_g29210 Coffea canephora HOM05D004222 ORTHO05D004982 1.3e-55 219.9 145 74.5
Nn2g10347 Nelumbo nucifera HOM05D004222 ORTHO05D004982 1.3e-55 219.9 145 72.4
A08p01190 Brassica napus HOM05D004222 ORTHO05D004982 2.9e-55 218.8 152 70.4
BraA08t32170Z Brassica rapa HOM05D004222 ORTHO05D004982 2.9e-55 218.8 152 70.4
ECA232G1089 Erigeron canadensis HOM05D004222 ORTHO05D004982 2.9e-55 218.8 144 75.0
THA.LOC104810368 Tarenaya hassleriana HOM05D004222 ORTHO05D004982 3.8e-55 218.4 141 76.6
Aqoxy5G01362 Aquilegia oxysepala HOM05D004222 ORTHO05D004982 5.0e-55 218.0 138 75.4
BcaB04g17022 Brassica carinata HOM05D004222 ORTHO05D004982 5.0e-55 218.0 152 70.4
Oeu043649.1 Olea europaea HOM05D004222 ORTHO05D004982 5.0e-55 218.0 145 72.4
CARHR044490 Cardamine hirsuta HOM05D004222 ORTHO05D004982 6.5e-55 217.6 131 79.4
PSO724G0032 Papaver somniferum HOM05D004222 ORTHO05D004982 6.5e-55 217.6 154 70.8
Cc04_g01280 Coffea canephora HOM05D004222 ORTHO05D004982 8.5e-55 217.2 147 72.1
PGSC0003DMG400011493 Solanum tuberosum HOM05D004222 ORTHO05D004982 8.5e-55 217.2 155 73.5
Phvul.008G203400 Phaseolus vulgaris HOM05D004222 ORTHO05D004982 1.1e-54 216.9 153 68.6
SGA_v2.0_scaffold68G22854 Striga asiatica HOM05D004222 ORTHO05D004982 1.1e-54 216.9 146 75.3
AT1G54140 Arabidopsis thaliana HOM05D004222 ORTHO05D004982 1.4e-54 216.5 143 74.8
Medtr4g123000 Medicago truncatula HOM05D004222 ORTHO05D004982 1.4e-54 216.5 155 70.3
Medtr3g015130 Medicago truncatula HOM05D004222 ORTHO05D004982 1.9e-54 216.1 155 70.3
VMungo0647G2371 Vigna mungo HOM05D004222 ORTHO05D004982 2.5e-54 215.7 153 69.9
Carub.0001s4338 Capsella rubella HOM05D004222 ORTHO05D004982 3.2e-54 215.3 131 77.9
AL1G62860 Arabidopsis lyrata HOM05D004222 ORTHO05D004982 4.2e-54 214.9 143 74.1
SGA_v2.0_scaffold4G02066 Striga asiatica HOM05D004222 ORTHO05D004982 4.2e-54 214.9 153 69.3
ECA232G2519 Erigeron canadensis HOM05D004222 ORTHO05D004982 5.5e-54 214.5 144 73.6
Peaxi162Scf00528g00226 Petunia axillaris HOM05D004222 ORTHO05D004982 7.2e-54 214.2 133 77.4
unitig_699.g19654 Utricularia gibba HOM05D004222 ORTHO05D004982 6.1e-53 211.1 145 71.0
SalBow6G6030 Salvia bowleyana HOM05D004222 ORTHO05D004982 7.9e-53 210.7 145 73.1
Ah.06g195960 Amaranthus hybridus HOM05D004222 ORTHO05D004982 1.0e-52 210.3 151 70.9
Migut.I01080 Erythranthe guttata HOM05D004222 ORTHO05D004982 1.0e-52 210.3 146 71.9
Psat0s1953g0320 Pisum sativum HOM05D004222 ORTHO05D004982 1.0e-52 210.3 158 68.4
MBI05_g15473_MAGBIO Magnolia biondii HOM05D004222 ORTHO05D004982 1.4e-52 209.9 141 71.6
AL1G63010 Arabidopsis lyrata HOM05D004222 ORTHO05D004982 2.3e-52 209.1 143 72.7
TPR.G18581 Trifolium pratense HOM05D004222 ORTHO05D004982 2.3e-52 209.1 153 65.4
ATR0598G103 Amborella trichopoda HOM05D004222 ORTHO05D004982 3.0e-52 208.8 144 71.5
SalBow6G3336 Salvia bowleyana HOM05D004222 ORTHO05D004982 6.7e-52 207.6 145 71.7
BcaC08g44165 Brassica carinata HOM05D004222 ORTHO05D004982 1.1e-51 206.8 152 69.7
C06p15670 Brassica napus HOM05D004222 ORTHO05D004982 1.5e-51 206.5 152 69.7
SalBow6G2027 Salvia bowleyana HOM05D004222 ORTHO05D004982 2.0e-51 206.1 145 71.0
Dinv10670 Davidia involucrata HOM05D004222 ORTHO05D004982 4.4e-51 204.9 131 77.1
SEGI_03819 Sequoiadendron giganteum HOM05D004222 ORTHO05D004982 1.3e-50 203.4 152 66.4
BcaB02g10859 Brassica carinata HOM05D004222 ORTHO05D004982 2.8e-50 202.2 144 70.1
BolC6t36754H Brassica oleracea HOM05D004222 ORTHO05D004982 6.3e-50 201.1 152 68.4
CDE08G1040 Ceratophyllum demersum HOM05D004222 ORTHO05D004982 8.2e-50 200.7 139 70.5
SHI11210 Sapria himalayana HOM05D004222 ORTHO05D004982 2.4e-49 199.1 144 66.7
VMungo1215G2100 Vigna mungo HOM05D004222 ORTHO05D004982 1.5e-48 196.4 228 48.2
Aa31LG10G1270 Aethionema arabicum HOM05D004222 ORTHO05D004982 2.0e-48 196.1 139 69.1
HPP92_016607 Vanilla planifolia HOM05D004222 ORTHO05D004982 1.3e-47 193.4 164 64.6
HanXRQChr09g0262591 Helianthus annuus HOM05D004222 ORTHO05D004982 3.8e-47 191.8 123 76.4
Atru.chr1.2991 Acer truncatum HOM05D004222 ORTHO05D004982 1.6e-45 186.4 121 71.9
Zm00001eb392970 Zea mays HOM05D004222 ORTHO05D004982 6.1e-45 184.5 148 66.2
SMO340G0157 Selaginella moellendorffii HOM05D004222 ORTHO05D004982 2.3e-44 182.6 139 61.9
Os03g0408500 Oryza sativa ssp. japonica HOM05D004222 ORTHO05D004982 5.2e-44 181.4 149 64.4
CBR_g52315 Chara braunii HOM05D004222 ORTHO05D004982 3.3e-43 178.7 141 60.3
Mapoly0152s0015 Marchantia polymorpha HOM05D004222 ORTHO05D004982 7.4e-43 177.6 139 61.9
Pp3c19_19770 Physcomitrium patens HOM05D004222 ORTHO05D004982 9.7e-43 177.2 125 65.6
Zm00001eb019630 Zea mays HOM05D004222 ORTHO05D004982 4.8e-42 174.9 153 62.1
AagrBONN_evm.TU.Sc2ySwM_117.372 Anthoceros agrestis HOM05D004222 ORTHO05D004982 2.6e-40 169.1 122 65.6
AUR62029931 Chenopodium quinoa HOM05D004222 ORTHO05D004982 6.3e-34 147.9 97 72.2
AUR62043147 Chenopodium quinoa HOM05D004222 ORTHO05D004982 9.1e-33 144.1 86 77.9
AUR62033567 Chenopodium quinoa HOM05D004222 ORTHO05D004982 1.0e-31 140.6 86 77.9
Eucgr.J01267 Eucalyptus grandis HOM05D004222 ORTHO05D004982 8.5e-31 137.5 153 49.0
TPR.G12685 Trifolium pratense HOM05D004222 ORTHO05D004982 1.6e-29 133.3 89 74.2
HanXRQChr14g0440851 Helianthus annuus HOM05D004222 ORTHO05D004982 1.0e-28 130.6 146 47.3
Ah.06g188160 Amaranthus hybridus HOM05D000059 ORTHO05D004982 5.2e-28 128.3 106 64.2
Duzib160G0511 Durio zibethinus HOM05D004222 ORTHO05D004982 5.2e-28 128.3 112 61.6
C06p09920 Brassica napus HOM05D004222 ORTHO05D004982 2.0e-27 126.3 126 55.6
Thhalv10029376m.g Eutrema salsugineum HOM05D004222 ORTHO05D004982 2.4e-25 119.4 102 61.8
Cc02_g29240 Coffea canephora HOM05D004222 ORTHO05D004982 4.5e-24 115.2 88 68.2
PRCOL_00004328 Prasinoderma coloniale HOM05D004222 ORTHO05D004982 1.2e-21 107.1 124 47.6
BcaC08g43594 Brassica carinata HOM05D004222 ORTHO05D004982 2.8e-21 105.9 88 63.6
BolC6t36064H Brassica oleracea HOM05D004222 ORTHO05D004982 2.8e-21 105.9 88 63.6
Cre07.g353350 Chlamydomonas reinhardtii HOM05D004222 ORTHO05D004982 6.1e-21 104.8 118 44.9
Haze_26828 Corylus avellana HOM05D000371 ORTHO05D004982 5.2e-20 101.7 105 44.8
Os07g0612500 Oryza sativa ssp. japonica HOM05D004222 ORTHO05D004982 5.4e-17 91.7 144 35.4
FAN05G5041 Fragaria x ananassa HOM05D004222 ORTHO05D004982 1.9e-14 83.2 64 62.5
TPR.G10895 Trifolium pratense HOM05D004222 ORTHO05D004982 9.5e-14 80.9 66 62.1
AUR62034601 Chenopodium quinoa HOM05D004222 ORTHO05D004982 8.0e-13 77.8 46 78.3
unitig_52.g17107 Utricularia gibba HOM05D004222 ORTHO05D004982 3.4e-11 72.4 84 50.0
MCO04G196 Micromonas commoda HOM05D004222 ORTHO05D004982 5.7e-11 71.6 89 38.2
Medtr6g027990 Medicago truncatula HOM05D004222 ORTHO05D004982 6.4e-10 68.2 50 68.0
CARHR038570 Cardamine hirsuta HOM05D004222 ORTHO05D004982 1.7e-07 60.1 74 47.3
ECA238G1237 Erigeron canadensis HOM05D004222 ORTHO05D004982 5.0e-07 58.5 143 35.7
Nitab4.5_0018373g0020 Nicotiana tabacum HOM05D000428 ORTHO05D000582 1.1e-06 57.4 83 41.0


User provided reference genes

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