Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR042G1249 Punica granatum HOM05D006877 ORTHO05D008735 8.7e-295 1017.3 1085 100.0
Prupe.2G325900 Prunus persica HOM05D006877 ORTHO05D008735 1.3e-152 545.0 716 65.2
Ciclev10018634m.g Citrus clementina HOM05D006877 ORTHO05D008735 2.0e-145 521.2 715 69.7
Atru.chr12.1962 Acer truncatum HOM05D006877 ORTHO05D008735 2.6e-145 520.8 712 67.1
Haze_00425 Corylus avellana HOM05D006877 ORTHO05D008735 2.6e-145 520.8 752 65.2
RcHm_v2.0_Chr1g0384191 Rosa chinensis HOM05D006877 ORTHO05D008735 7.4e-145 519.2 754 62.9
Gohir.D08G242601 Gossypium hirsutum HOM05D006877 ORTHO05D008735 1.7e-144 518.1 751 69.9
Gohir.A08G221900 Gossypium hirsutum HOM05D006877 ORTHO05D008735 1.1e-143 515.4 711 71.7
Gorai.004G258300 Gossypium raimondii HOM05D006877 ORTHO05D008735 3.1e-143 513.8 748 69.7
Duzib106G0107 Durio zibethinus HOM05D006877 ORTHO05D008735 1.6e-142 511.5 708 70.5
FAN10G2126 Fragaria x ananassa HOM05D006877 ORTHO05D008735 2.2e-141 507.7 793 67.1
DCAR_020407 Daucus carota HOM05D006877 ORTHO05D008735 2.5e-140 504.2 748 55.2
CANSAT21G1458 Cannabis sativa HOM05D006877 ORTHO05D008735 5.5e-140 503.1 754 68.8
QL09p024038 Quercus lobata HOM05D006877 ORTHO05D008735 7.2e-140 502.7 753 64.9
FAN01G1958 Fragaria x ananassa HOM05D006877 ORTHO05D008735 1.0e-138 498.8 777 67.4
Oeu060385.2 Olea europaea HOM05D006877 ORTHO05D008735 7.5e-137 492.7 753 68.4
VMungo0251G1190 Vigna mungo HOM05D006877 ORTHO05D008735 2.8e-136 490.7 713 61.7
TWI39G0452 Tripterygium wilfordii HOM05D006877 ORTHO05D008735 5.3e-135 486.5 734 59.8
Lalb_Chr13g0294611 Lupinus albus HOM05D006877 ORTHO05D008735 1.3e-133 481.9 711 61.7
TAR381G0744 Trochodendron aralioides HOM05D006877 ORTHO05D008735 1.6e-131 474.9 752 58.8
Lj4g0001495 Lotus japonicus HOM05D006877 ORTHO05D008735 1.4e-130 471.9 718 64.2
MD01G1235800 Malus domestica HOM05D006877 ORTHO05D008735 1.2e-129 468.8 746 60.3
Manes.09G127200 Manihot esculenta HOM05D006877 ORTHO05D008735 1.4e-127 461.8 707 64.4
FAN03G2267 Fragaria x ananassa HOM05D006877 ORTHO05D008735 1.2e-126 458.8 736 63.5
GSVIVG01024409001 Vitis vinifera HOM05D006877 ORTHO05D008735 1.2e-126 458.8 709 53.9
Eucgr.A02969 Eucalyptus grandis HOM05D006877 ORTHO05D008735 4.5e-126 456.8 707 67.3
Migut.F00097 Erythranthe guttata HOM05D006877 ORTHO05D008735 6.5e-125 453.0 711 69.3
Sabra19G0059000 Salix brachista HOM05D006877 ORTHO05D008735 1.9e-124 451.4 710 61.0
MSTRG.8575 Avicennia marina HOM05D006877 ORTHO05D008735 3.2e-124 450.7 711 68.5
Nn1g01910 Nelumbo nucifera HOM05D006877 ORTHO05D008735 1.0e-122 445.7 747 65.5
Dinv17258 Davidia involucrata HOM05D006877 ORTHO05D008735 1.2e-121 442.2 740 58.1
MELO3C024733.2 Cucumis melo HOM05D006877 ORTHO05D008735 7.5e-121 439.5 752 65.3
CSS0011113 Camellia sinensis var. sinensis HOM05D006877 ORTHO05D008735 1.7e-120 438.3 715 63.5
PSO063G6761 Papaver somniferum HOM05D006877 ORTHO05D008735 6.3e-120 436.4 710 58.9
Sed0012706 Sechium edule HOM05D006877 ORTHO05D008735 8.3e-120 436.0 754 62.1
PGSC0003DMG400003143 Solanum tuberosum HOM05D006877 ORTHO05D008735 1.4e-119 435.3 716 68.2
arahy.Tifrunner.gnm1.ann1.G9QUK2 Arachis hypogaea HOM05D006877 ORTHO05D008735 3.1e-119 434.1 751 60.1
Potri.019G049400 Populus trichocarpa HOM05D006877 ORTHO05D008735 3.1e-119 434.1 710 59.7
CsaV3_6G010140 Cucumis sativus L. HOM05D006877 ORTHO05D008735 5.4e-119 433.3 747 65.7
Glyma.08G106500 Glycine max HOM05D006877 ORTHO05D008735 5.4e-119 433.3 710 63.1
ClCG02G007690 Citrullus lanatus HOM05D006877 ORTHO05D008735 1.6e-118 431.8 769 64.8
arahy.Tifrunner.gnm1.ann1.VTBJ7F Arachis hypogaea HOM05D006877 ORTHO05D008735 4.5e-118 430.3 751 59.7
Lj1A1033T71 Lonicera japonica HOM05D006877 ORTHO05D008735 5.9e-118 429.9 722 67.2
Ah.04g156540 Amaranthus hybridus HOM05D006877 ORTHO05D008735 7.8e-118 429.5 713 61.3
Hma1.2p1_0758F.1_g213710 Hydrangea macrophylla HOM05D006877 ORTHO05D008735 2.3e-117 427.9 709 62.1
SalBow4G0068 Salvia bowleyana HOM05D006877 ORTHO05D008735 5.6e-116 423.3 710 67.6
Sopen03g027750 Solanum pennellii HOM05D006877 ORTHO05D008735 7.3e-116 422.9 715 67.6
ECA246G2862 Erigeron canadensis HOM05D006877 ORTHO05D008735 2.8e-115 421.0 716 61.7
COL.COLO4_11806 Corchorus olitorius HOM05D006877 ORTHO05D008735 3.0e-114 417.5 744 59.7
Aqoxy3G02132 Aquilegia oxysepala HOM05D006877 ORTHO05D008735 6.8e-114 416.4 731 58.7
HanXRQChr01g0027911 Helianthus annuus HOM05D006877 ORTHO05D008735 6.8e-114 416.4 722 66.8
Medtr8g080940 Medicago truncatula HOM05D006877 ORTHO05D008735 6.8e-114 416.4 713 61.7
Solyc03g097000.3 Solanum lycopersicum HOM05D006877 ORTHO05D008735 1.5e-113 415.2 716 67.5
MBI04_g20982_MAGBIO Magnolia biondii HOM05D006877 ORTHO05D008735 1.4e-111 408.7 710 61.0
THA.LOC104821701 Tarenaya hassleriana HOM05D006877 ORTHO05D008735 2.7e-110 404.4 748 60.2
Nitab4.5_0011357g0010 Nicotiana tabacum HOM05D006877 ORTHO05D008735 7.8e-110 402.9 713 66.9
Lsat_1_v5_gn_3_600 Lactuca sativa HOM05D006877 ORTHO05D008735 1.7e-109 401.7 725 60.7
SGA_v2.0_scaffold18G08509 Striga asiatica HOM05D006877 ORTHO05D008735 2.3e-109 401.4 708 61.4
CARHR185880 Cardamine hirsuta HOM05D006877 ORTHO05D008735 2.5e-108 397.9 747 54.9
Nitab4.5_0000021g0490 Nicotiana tabacum HOM05D006877 ORTHO05D008735 3.3e-108 397.5 713 67.0
SalBow4G3121 Salvia bowleyana HOM05D006877 ORTHO05D008735 7.3e-108 396.4 710 66.2
EL10Ac3g05079 Beta vulgaris HOM05D006877 ORTHO05D008735 1.6e-107 395.2 729 58.0
Ca_18009_v3 Cicer arietinum L. HOM05D006877 ORTHO05D008735 2.1e-107 394.8 752 57.8
Psat7g076160 Pisum sativum HOM05D006877 ORTHO05D008735 1.8e-106 391.7 749 57.7
AL6G39840 Arabidopsis lyrata HOM05D006877 ORTHO05D008735 2.0e-105 388.3 747 51.0
Cc03_g15580 Coffea canephora HOM05D006877 ORTHO05D008735 3.4e-105 387.5 748 65.0
Actinidia18704 Actinidia chinensis HOM05D006877 ORTHO05D008735 7.5e-105 386.3 695 56.7
Thhalv10003569m.g Eutrema salsugineum HOM05D006877 ORTHO05D008735 6.4e-104 383.3 738 58.0
Aa31LG11G9010 Aethionema arabicum HOM05D006877 ORTHO05D008735 2.4e-103 381.3 736 54.6
Sp2g20510 Schrenkiella parvula HOM05D006877 ORTHO05D008735 2.4e-103 381.3 738 54.6
C07p40570 Brassica napus HOM05D006877 ORTHO05D008735 2.3e-101 374.8 741 54.4
Peaxi162Scf00745g00840 Petunia axillaris HOM05D006877 ORTHO05D008735 6.6e-101 373.2 751 63.1
TPR.G11966 Trifolium pratense HOM05D006877 ORTHO05D008735 5.6e-100 370.2 844 53.3
BraA06t26685Z Brassica rapa HOM05D006877 ORTHO05D008735 1.6e-99 368.6 750 53.6
A06p37650 Brassica napus HOM05D006877 ORTHO05D008735 2.1e-99 368.2 750 53.5
Sc25g0001210 Simmondsia chinensis HOM05D006877 ORTHO05D008735 2.1e-99 368.2 750 50.9
BolC7t44594H Brassica oleracea HOM05D006877 ORTHO05D008735 6.2e-99 366.7 758 53.2
CAN.G1131.10 Capsicum annuum HOM05D006877 ORTHO05D008735 6.2e-99 366.7 739 63.2
AUR62002061 Chenopodium quinoa HOM05D006877 ORTHO05D008735 1.1e-87 329.3 191 83.2
Rhsim09G0212700 Rhododendron simsii HOM05D006877 ORTHO05D008735 2.4e-87 328.2 712 53.7
ATR0829G170 Amborella trichopoda HOM05D006877 ORTHO05D008735 2.2e-80 305.1 662 54.1
Hund27367 Selenicereus undatus HOM05D006877 ORTHO05D008735 1.4e-74 285.8 710 59.9
FvH4_7g33960 Fragaria vesca HOM05D006877 ORTHO05D008735 1.1e-68 266.2 307 48.5
CDE03G0296 Ceratophyllum demersum HOM05D006877 ORTHO05D008735 1.8e-66 258.8 645 56.1
Phvul.003G065400 Phaseolus vulgaris HOM05D006877 ORTHO05D008735 3.1e-66 258.1 316 47.5
CiPaw.05G220200 Carya illinoinensis HOM05D006877 ORTHO05D008735 6.9e-66 256.9 291 46.0
Thecc.05G213300 Theobroma cacao HOM05D006877 ORTHO05D008735 3.7e-59 234.6 274 47.4
Cpa.g.sc39.73 Carica papaya HOM05D006877 ORTHO05D008735 6.2e-59 233.8 269 46.5
Zm00001eb378980 Zea mays HOM05D006877 ORTHO05D008735 4.9e-56 224.2 728 48.9
AT5G27270 Arabidopsis thaliana HOM05D006877 ORTHO05D008735 5.5e-55 220.7 300 40.7
AUR62028175 Chenopodium quinoa HOM05D006877 ORTHO05D008735 4.6e-54 217.6 125 82.4
Os06g0111300 Oryza sativa ssp. japonica HOM05D006877 ORTHO05D008735 1.1e-52 213.0 160 63.1
Carub.0006s2526 Capsella rubella HOM05D006877 ORTHO05D008735 1.8e-42 179.1 271 37.3
Pp3c17_13520 Physcomitrium patens HOM05D006877 ORTHO05D008735 1.8e-42 179.1 193 50.8
Mapoly0001s0556 Marchantia polymorpha HOM05D006877 ORTHO05D008735 7.7e-41 173.7 185 50.8
SMO203G0003 Selaginella moellendorffii HOM05D006877 ORTHO05D008735 5.0e-32 144.4 200 42.5
HPP92_012823 Vanilla planifolia HOM05D006877 ORTHO05D008735 1.6e-25 122.9 288 30.2
SEGI_02928 Sequoiadendron giganteum HOM05D006877 ORTHO05D008735 9.4e-23 113.6 299 29.1
vmacro22170 Vaccinium macrocarpon HOM05D006877 ORTHO05D008735 2.1e-22 112.5 78 66.7
CDE06G2178 Ceratophyllum demersum HOM05D006877 ORTHO05D008735 3.0e-21 108.6 127 42.5
Cc01_g05460 Coffea canephora HOM05D006877 ORTHO05D008735 6.7e-21 107.5 89 55.1
vmacro22171 Vaccinium macrocarpon HOM05D006877 ORTHO05D008735 5.9e-17 94.4 195 32.8
COL.COLO4_05229 Corchorus olitorius HOM05D006877 ORTHO05D008735 9.4e-15 87.0 59 71.2
CARHR259090 Cardamine hirsuta HOM05D006877 ORTHO05D008735 2.6e-12 79.0 50 70.0
BcaNung02478 Brassica carinata HOM05D000721 ORTHO05D001990 7.5e-12 77.4 140 32.1
CDE05G0456 Ceratophyllum demersum HOM05D002479 ORTHO05D002675 7.7e-09 67.4 95 38.9
MBI02_g29389_MAGBIO Magnolia biondii HOM05D002479 ORTHO05D002675 1.7e-08 66.2 88 38.6
AUR62037373 Chenopodium quinoa HOM05D002479 ORTHO05D002675 3.8e-08 65.1 85 36.5
PSO210G1488 Papaver somniferum HOM05D002479 ORTHO05D002675 5.0e-08 64.7 93 36.6
Ah.01g005230 Amaranthus hybridus HOM05D002479 ORTHO05D002675 6.6e-08 64.3 84 40.5
Dinv01391 Davidia involucrata HOM05D002479 ORTHO05D002675 8.6e-08 63.9 93 36.6
SGA_v2.0_scaffold75G24811 Striga asiatica HOM05D000001 ORTHO05D009270 8.6e-08 63.9 254 25.2
TAR626G0455 Trochodendron aralioides HOM05D002479 ORTHO05D002675 8.6e-08 63.9 93 36.6
HanXRQChr15g0480341 Helianthus annuus HOM05D002479 ORTHO05D002675 1.1e-07 63.5 91 36.3
Cc05_g06520 Coffea canephora HOM05D002479 ORTHO05D002675 1.5e-07 63.2 93 36.6
AagrBONN_evm.TU.Sc2ySwM_362.1641 Anthoceros agrestis HOM05D006877 ORTHO05D008735 1.9e-07 62.8 134 29.1
Aqoxy4G01360 Aquilegia oxysepala HOM05D002479 ORTHO05D002675 1.9e-07 62.8 95 36.8
ClCG02G010810 Citrullus lanatus HOM05D000001 ORTHO05D000003 1.9e-07 62.8 284 19.4
ClCG01G020210 Citrullus lanatus HOM05D002479 ORTHO05D002675 2.5e-07 62.4 201 26.4
AagrBONN_evm.TU.Sc2ySwM_344.385__386 Anthoceros agrestis HOM05D002479 ORTHO05D002675 3.3e-07 62.0 87 35.6
FvH4_6g44930 Fragaria vesca HOM05D002479 ORTHO05D002675 3.3e-07 62.0 85 36.5
FAN02G3196 Fragaria x ananassa HOM05D002479 ORTHO05D002675 3.3e-07 62.0 85 36.5
FAN05G3474 Fragaria x ananassa HOM05D002479 ORTHO05D002675 3.3e-07 62.0 85 36.5
QL11p056630 Quercus lobata HOM05D000001 ORTHO05D000003 3.3e-07 62.0 285 18.6
FAN14G2792 Fragaria x ananassa HOM05D002479 ORTHO05D002675 4.2e-07 61.6 85 36.5
Lsat_1_v5_gn_3_39301 Lactuca sativa HOM05D002479 ORTHO05D002675 4.2e-07 61.6 97 33.0
PGSC0003DMG400029268 Solanum tuberosum HOM05D000001 ORTHO05D000003 4.2e-07 61.6 293 21.5
FAN24G2985 Fragaria x ananassa HOM05D000001 ORTHO05D000003 5.5e-07 61.2 285 18.2
Oeu043369.1 Olea europaea HOM05D002479 ORTHO05D002675 5.5e-07 61.2 91 35.2
CSS0000020 Camellia sinensis var. sinensis HOM05D002479 ORTHO05D002675 7.2e-07 60.8 81 39.5
CSS0034469 Camellia sinensis var. sinensis HOM05D002479 ORTHO05D002675 7.2e-07 60.8 81 39.5
FvH4_2g16980 Fragaria vesca HOM05D000001 ORTHO05D000003 7.2e-07 60.8 285 18.2
FAN09G3013 Fragaria x ananassa HOM05D002479 ORTHO05D002675 7.2e-07 60.8 85 35.3
MELO3C035015.2 Cucumis melo HOM05D000001 ORTHO05D000003 9.5e-07 60.5 288 21.2
Nitab4.5_0001961g0100 Nicotiana tabacum HOM05D000001 ORTHO05D000003 9.5e-07 60.5 293 20.1
Nitab4.5_0005160g0080 Nicotiana tabacum HOM05D000001 ORTHO05D000003 1.2e-06 60.1 291 20.3
Prupe.8G181700 Prunus persica HOM05D000001 ORTHO05D000003 1.2e-06 60.1 292 19.5
CANSAT64G1102 Cannabis sativa HOM05D002479 ORTHO05D002675 1.6e-06 59.7 93 33.3
Solyc07g054480.3 Solanum lycopersicum HOM05D002479 ORTHO05D002675 1.6e-06 59.7 91 34.1
Sopen07g028420 Solanum pennellii HOM05D002479 ORTHO05D002675 1.6e-06 59.7 91 34.1
MSTRG.14189 Avicennia marina HOM05D002479 ORTHO05D002675 2.1e-06 59.3 93 34.4
Nitab4.5_0027477g0010 Nicotiana tabacum HOM05D002479 ORTHO05D002675 2.1e-06 59.3 91 34.1
Sc06g0009220 Simmondsia chinensis HOM05D002479 ORTHO05D002675 2.1e-06 59.3 85 34.1
arahy.Tifrunner.gnm1.ann1.8Z7TM2 Arachis hypogaea HOM05D002479 ORTHO05D002675 2.8e-06 58.9 104 31.7
CBR_g19478 Chara braunii HOM05D006877 ORTHO05D000003 2.8e-06 58.9 89 32.6
Nitab4.5_0009520g0020 Nicotiana tabacum HOM05D002479 ORTHO05D002675 2.8e-06 58.9 83 36.1
PGR004G1668 Punica granatum HOM05D002479 ORTHO05D002675 2.8e-06 58.9 78 35.9
PGSC0003DMG400018365 Solanum tuberosum HOM05D002479 ORTHO05D002675 2.8e-06 58.9 91 34.1
EL10Ac9g20676 Beta vulgaris HOM05D002479 ORTHO05D002675 3.6e-06 58.5 85 34.1
COL.COLO4_05230 Corchorus olitorius HOM05D006877 ORTHO05D008735 3.6e-06 58.5 39 66.7
Potri.004G208000 Populus trichocarpa HOM05D000001 ORTHO05D000003 3.6e-06 58.5 289 21.1
vmacro02682 Vaccinium macrocarpon HOM05D000001 ORTHO05D000003 3.6e-06 58.5 286 19.9
Migut.B01435 Erythranthe guttata HOM05D000001 ORTHO05D000003 4.7e-06 58.2 296 24.7
RcHm_v2.0_Chr2g0162121 Rosa chinensis HOM05D002479 ORTHO05D002675 4.7e-06 58.2 85 35.3
Sopen12g032510 Solanum pennellii HOM05D000001 ORTHO05D000003 4.7e-06 58.2 294 20.7
MSTRG.4437 Avicennia marina HOM05D000001 ORTHO05D000003 6.1e-06 57.8 290 21.7
CAN.G996.9 Capsicum annuum HOM05D002479 ORTHO05D002675 6.1e-06 57.8 91 34.1
CBR_g31394 Chara braunii HOM05D004127 ORTHO05D005119 6.1e-06 57.8 181 28.7
DCAR_004368 Daucus carota HOM05D006967 ORTHO05D008692 6.1e-06 57.8 85 36.5
Nn2g14806 Nelumbo nucifera HOM05D002479 ORTHO05D002675 6.1e-06 57.8 92 35.9
Sed0006509 Sechium edule HOM05D000001 ORTHO05D000003 6.1e-06 57.8 288 19.4
CSS0021477 Camellia sinensis var. sinensis HOM05D000001 ORTHO05D000003 8.0e-06 57.4 290 21.0
MD17G1081600 Malus domestica HOM05D002479 ORTHO05D002675 8.0e-06 57.4 85 36.5
Peaxi162Scf00007g00285 Petunia axillaris HOM05D002479 ORTHO05D002675 8.0e-06 57.4 91 33.0
SalBow7G2923 Salvia bowleyana HOM05D002479 ORTHO05D002675 8.0e-06 57.4 82 39.0


User provided reference genes

Program Settings