Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR042G0828 Punica granatum HOM05D003792 ORTHO05D003195 5.1e-148 527.7 264 100.0
Haze_10092 Corylus avellana HOM05D003792 ORTHO05D003195 5.6e-30 135.6 305 36.7
Dinv42162 Davidia involucrata HOM05D003792 ORTHO05D003195 3.0e-23 113.2 279 34.8
TAR381G1051 Trochodendron aralioides HOM05D003792 ORTHO05D003195 3.0e-23 113.2 266 35.7
Duzib248G0608 Durio zibethinus HOM05D003792 ORTHO05D003195 3.9e-23 112.8 279 34.1
Dinv15716 Davidia involucrata HOM05D003792 ORTHO05D003195 6.7e-23 112.1 264 34.8
GSVIVG01031734001 Vitis vinifera HOM05D003792 ORTHO05D003195 1.1e-22 111.3 267 34.1
QL11p035325 Quercus lobata HOM05D003792 ORTHO05D003195 5.6e-22 109.0 269 33.1
Actinidia00436 Actinidia chinensis HOM05D003792 ORTHO05D003195 1.3e-21 107.8 263 34.2
Potri.009G101400 Populus trichocarpa HOM05D003792 ORTHO05D003195 2.8e-21 106.7 266 36.5
MD05G1081700 Malus domestica HOM05D003792 ORTHO05D003195 3.1e-20 103.2 224 36.6
Ciclev10029147m.g Citrus clementina HOM05D003792 ORTHO05D003195 4.0e-20 102.8 257 35.8
Thecc.02G101400 Theobroma cacao HOM05D003792 ORTHO05D003195 4.0e-20 102.8 270 33.7
TAR628G0921 Trochodendron aralioides HOM05D003792 ORTHO05D003195 4.0e-20 102.8 252 35.7
Sabra09G0077200 Salix brachista HOM05D003792 ORTHO05D003195 9.0e-20 101.7 244 36.1
CSS0015140 Camellia sinensis var. sinensis HOM05D003792 ORTHO05D003195 1.5e-19 100.9 257 34.6
MD08G1101100 Malus domestica HOM05D003792 ORTHO05D003195 7.6e-19 98.6 212 35.4
TAR376G0615 Trochodendron aralioides HOM05D003792 ORTHO05D003195 1.0e-18 98.2 270 34.1
CiPaw.05G007500 Carya illinoinensis HOM05D003792 ORTHO05D003195 2.9e-18 96.7 218 35.8
CANSAT25G3506 Cannabis sativa HOM05D003792 ORTHO05D003195 3.8e-18 96.3 262 30.5
Potri.004G140701 Populus trichocarpa HOM05D003792 ORTHO05D003195 3.8e-18 96.3 238 33.6
CANSAT25G2784 Cannabis sativa HOM05D003792 ORTHO05D003195 6.5e-18 95.5 262 30.5
CSS0036112 Camellia sinensis var. sinensis HOM05D003792 ORTHO05D003195 1.1e-17 94.7 214 36.0
Atru.chr5.2692 Acer truncatum HOM05D003792 ORTHO05D003195 7.1e-17 92.0 263 31.2
MD15G1082300 Malus domestica HOM05D003792 ORTHO05D003195 9.3e-17 91.7 209 36.8
Glyma.02G131800 Glycine max HOM05D003792 ORTHO05D003195 1.2e-16 91.3 247 30.4
Glyma.07G213000 Glycine max HOM05D003792 ORTHO05D003195 1.2e-16 91.3 237 31.2
Dinv39314 Davidia involucrata HOM05D003792 ORTHO05D003195 1.6e-16 90.9 233 34.3
Gorai.008G024800 Gossypium raimondii HOM05D003792 ORTHO05D003195 2.1e-16 90.5 241 33.6
FAN27G2730 Fragaria x ananassa HOM05D025254 ORTHO05D003195 3.5e-16 89.7 241 34.4
Lj4g0023306 Lotus japonicus HOM05D003792 ORTHO05D003195 3.5e-16 89.7 259 32.4
FAN20G1193 Fragaria x ananassa HOM05D025254 ORTHO05D003195 4.6e-16 89.4 241 32.8
Gohir.D12G024500 Gossypium hirsutum HOM05D003792 ORTHO05D003195 4.6e-16 89.4 248 33.1
Lj5C209G18 Lonicera japonica HOM05D003792 ORTHO05D003195 4.6e-16 89.4 149 40.3
Potri.014G029000 Populus trichocarpa HOM05D003792 ORTHO05D003195 6.0e-16 89.0 234 33.8
FvH4_2g05920 Fragaria vesca HOM05D025254 ORTHO05D003195 1.8e-15 87.4 255 29.8
Gohir.A01G007200 Gossypium hirsutum HOM05D003792 ORTHO05D003195 1.8e-15 87.4 231 32.9
RcHm_v2.0_Chr6g0307971 Rosa chinensis HOM05D003792 ORTHO05D003195 2.3e-15 87.0 207 35.7
arahy.Tifrunner.gnm1.ann1.ND8QY1 Arachis hypogaea HOM05D003792 ORTHO05D003195 3.0e-15 86.7 218 33.5
arahy.Tifrunner.gnm1.ann1.V1SQNE Arachis hypogaea HOM05D003792 ORTHO05D003195 3.0e-15 86.7 218 33.5
Cpa.g.sc62.6 Carica papaya HOM05D003792 ORTHO05D003195 5.1e-15 85.9 326 29.1
FAN15G2062 Fragaria x ananassa HOM05D025254 ORTHO05D003195 5.1e-15 85.9 244 33.2
Gorai.002G008300 Gossypium raimondii HOM05D003792 ORTHO05D003195 6.7e-15 85.5 231 32.5
THA.LOC104819577 Tarenaya hassleriana HOM05D009953 ORTHO05D003195 6.7e-15 85.5 225 36.0
Medtr4g085990 Medicago truncatula HOM05D003792 ORTHO05D003195 1.1e-14 84.7 246 32.5
Manes.10G080100 Manihot esculenta HOM05D003792 ORTHO05D003195 1.5e-14 84.3 210 34.8
FAN15G1261 Fragaria x ananassa HOM05D003792 ORTHO05D003195 1.9e-14 84.0 219 34.2
arahy.Tifrunner.gnm1.ann1.I5Q2RG Arachis hypogaea HOM05D003792 ORTHO05D003195 3.3e-14 83.2 265 29.4
FvH4_2g34400 Fragaria vesca HOM05D003792 ORTHO05D003195 3.3e-14 83.2 219 34.2
TPR.G12693 Trifolium pratense HOM05D003792 ORTHO05D003195 4.3e-14 82.8 246 32.1
GSVIVG01009490001 Vitis vinifera HOM05D003792 ORTHO05D003195 4.3e-14 82.8 224 33.0
arahy.Tifrunner.gnm1.ann1.SW5XY7 Arachis hypogaea HOM05D003792 ORTHO05D003195 5.7e-14 82.4 265 29.1
Cc02_g18840 Coffea canephora HOM05D011234 ORTHO05D003195 9.6e-14 81.6 255 30.6
AT5G42900 Arabidopsis thaliana HOM05D003792 ORTHO05D003195 1.3e-13 81.3 219 32.4
Lalb_Chr05g0219211 Lupinus albus HOM05D003792 ORTHO05D003195 2.1e-13 80.5 260 29.2
Prupe.1G435100 Prunus persica HOM05D003792 ORTHO05D003195 2.1e-13 80.5 203 33.5
Eucgr.F00223 Eucalyptus grandis HOM05D003792 ORTHO05D003195 2.8e-13 80.1 211 35.5
Psat7g125520 Pisum sativum HOM05D003792 ORTHO05D003195 2.8e-13 80.1 245 30.6
CiPaw.16G043500 Carya illinoinensis HOM05D003792 ORTHO05D003195 3.7e-13 79.7 203 34.0
PGR031G0673 Punica granatum HOM05D003792 ORTHO05D003195 4.8e-13 79.3 229 32.8
Gohir.A12G023800 Gossypium hirsutum HOM05D003792 ORTHO05D003195 6.3e-13 79.0 236 31.4
Sabra14G0019900 Salix brachista HOM05D003792 ORTHO05D003195 6.3e-13 79.0 233 32.2
Cfa018558 Carpinus fangiana HOM05D000207 ORTHO05D000606 8.2e-13 78.6 212 33.0
Dinv35957 Davidia involucrata HOM05D003792 ORTHO05D003195 1.4e-12 77.8 238 31.5
Rhsim11G0165200 Rhododendron simsii HOM05D003792 ORTHO05D003195 1.8e-12 77.4 194 33.5
Actinidia22631 Actinidia chinensis HOM05D003792 ORTHO05D003195 3.1e-12 76.6 258 32.6
A06p48190 Brassica napus HOM05D003792 ORTHO05D003195 3.1e-12 76.6 223 31.8
DCAR_019451 Daucus carota HOM05D003792 ORTHO05D003195 3.1e-12 76.6 196 32.7
TWI36G1706 Tripterygium wilfordii HOM05D003792 ORTHO05D003195 3.1e-12 76.6 233 32.2
Lalb_Chr09g0328351 Lupinus albus HOM05D003792 ORTHO05D003195 5.3e-12 75.9 206 29.6
Solyc04g078880.3 Solanum lycopersicum HOM05D003792 ORTHO05D003195 5.3e-12 75.9 220 31.8
AL8G18050 Arabidopsis lyrata HOM05D003792 ORTHO05D003195 6.9e-12 75.5 199 33.7
Carub.0008s0601 Capsella rubella HOM05D003792 ORTHO05D003195 6.9e-12 75.5 222 30.6
CiPaw.15G055900 Carya illinoinensis HOM05D003792 ORTHO05D003195 6.9e-12 75.5 207 32.9
QL02p004753 Quercus lobata HOM05D003792 ORTHO05D003195 6.9e-12 75.5 240 31.2
RcHm_v2.0_Chr6g0257491 Rosa chinensis HOM05D025254 ORTHO05D003195 6.9e-12 75.5 260 29.6
Sopen04g032480 Solanum pennellii HOM05D003792 ORTHO05D003195 6.9e-12 75.5 220 30.9
PGSC0003DMG402007970 Solanum tuberosum HOM05D003792 ORTHO05D003195 6.9e-12 75.5 196 32.1
Cc10_g04110 Coffea canephora HOM05D003792 ORTHO05D003195 9.0e-12 75.1 232 30.2
C04p25040 Brassica napus HOM05D003792 ORTHO05D003195 1.2e-11 74.7 223 33.6
BolC4t24005H Brassica oleracea HOM05D003792 ORTHO05D003195 1.2e-11 74.7 223 33.6
Gohir.D01G007300 Gossypium hirsutum HOM05D003792 ORTHO05D003195 1.2e-11 74.7 211 31.8
Manes.18G037600 Manihot esculenta HOM05D003792 ORTHO05D003195 1.2e-11 74.7 195 30.3
Nn5g30305 Nelumbo nucifera HOM05D003792 ORTHO05D003195 1.2e-11 74.7 243 29.6
TWI36G0999 Tripterygium wilfordii HOM05D003792 ORTHO05D003195 1.2e-11 74.7 255 32.2
Potri.002G125900 Populus trichocarpa HOM05D003792 ORTHO05D003195 1.5e-11 74.3 224 33.5
vmacro02043 Vaccinium macrocarpon HOM05D003792 ORTHO05D003195 1.5e-11 74.3 152 35.5
BcaC02g10794 Brassica carinata HOM05D003792 ORTHO05D003195 2.6e-11 73.6 222 32.9
Sp2g07640 Schrenkiella parvula HOM05D003792 ORTHO05D003195 2.6e-11 73.6 228 32.9
SpUn0117_0010 Schrenkiella parvula HOM05D003792 ORTHO05D003195 2.6e-11 73.6 228 32.9
BraA06t27688Z Brassica rapa HOM05D003792 ORTHO05D003195 3.4e-11 73.2 224 30.8
GSVIVG01024176001 Vitis vinifera HOM05D003792 ORTHO05D003195 3.4e-11 73.2 180 31.1
Phvul.003G291900 Phaseolus vulgaris HOM05D003792 ORTHO05D003195 4.5e-11 72.8 192 29.2
CDE04G2954 Ceratophyllum demersum HOM05D000925 ORTHO05D002746 7.6e-11 72.0 215 30.7
Glyma.17G242100 Glycine max HOM05D003792 ORTHO05D003195 1.0e-10 71.6 198 31.3
BcaNung03785 Brassica carinata HOM05D009953 ORTHO05D003195 1.3e-10 71.2 214 32.7
COL.COLO4_32649 Corchorus olitorius HOM05D003465 ORTHO05D004034 1.3e-10 71.2 247 29.6
Duzib052G0481 Durio zibethinus HOM05D003792 ORTHO05D003195 1.3e-10 71.2 270 28.9
Sp7g31710 Schrenkiella parvula HOM05D009953 ORTHO05D003195 1.3e-10 71.2 233 30.5
PSO210G6487 Papaver somniferum HOM05D003792 ORTHO05D003195 2.2e-10 70.5 208 30.3
VMungo0647G0635 Vigna mungo HOM05D003792 ORTHO05D003195 2.2e-10 70.5 198 29.8
Actinidia38059 Actinidia chinensis HOM05D004168 ORTHO05D004999 2.9e-10 70.1 205 31.7
Aa31LG9G12960 Aethionema arabicum HOM05D003792 ORTHO05D003195 2.9e-10 70.1 234 31.2
Actinidia23277 Actinidia chinensis HOM05D003792 ORTHO05D003195 3.8e-10 69.7 223 29.6
Duzib116G0066 Durio zibethinus HOM05D003792 ORTHO05D003195 5.0e-10 69.3 214 33.2
Glyma.14G083000 Glycine max HOM05D003792 ORTHO05D003195 5.0e-10 69.3 196 32.1
Rhsim06G0050200 Rhododendron simsii HOM05D003792 ORTHO05D003195 5.0e-10 69.3 255 31.8
CSS0021091 Camellia sinensis var. sinensis HOM05D003792 ORTHO05D003195 1.1e-09 68.2 238 29.8
BcaC01g00943 Brassica carinata HOM05D009953 ORTHO05D003195 1.4e-09 67.8 217 33.2
Nitab4.5_0002760g0070 Nicotiana tabacum HOM05D003792 ORTHO05D003195 1.4e-09 67.8 195 31.8
Aqoxy6G01313 Aquilegia oxysepala HOM05D003792 ORTHO05D003195 1.9e-09 67.4 238 30.7
Nn1g04847 Nelumbo nucifera HOM05D003792 ORTHO05D003195 1.9e-09 67.4 202 31.7
BolC1t00464H Brassica oleracea HOM05D009953 ORTHO05D003195 2.5e-09 67.0 212 32.1
Thhalv10003264m.g Eutrema salsugineum HOM05D003792 ORTHO05D003195 2.5e-09 67.0 230 30.4
Gohir.A06G018700 Gossypium hirsutum HOM05D003792 ORTHO05D003195 2.5e-09 67.0 211 32.2
Medtr1g019360 Medicago truncatula HOM05D003792 ORTHO05D003195 2.5e-09 67.0 176 29.0
Oeu012963.1 Olea europaea HOM05D003792 ORTHO05D003195 2.5e-09 67.0 201 31.8
Oeu025580.1 Olea europaea HOM05D003792 ORTHO05D003195 3.2e-09 66.6 219 31.1
Peaxi162Scf00252g00410 Petunia axillaris HOM05D003792 ORTHO05D003195 3.2e-09 66.6 191 30.4
BolC9t55450H Brassica oleracea HOM05D003792 ORTHO05D003195 4.2e-09 66.2 221 32.1
MSTRG.24332 Avicennia marina HOM05D003792 ORTHO05D003195 5.5e-09 65.9 197 32.5
vmacro21518 Vaccinium macrocarpon HOM05D003792 ORTHO05D003195 5.5e-09 65.9 240 30.0
ClCG02G005970 Citrullus lanatus HOM05D003792 ORTHO05D003195 9.3e-09 65.1 248 30.6
Prupe.8G126300 Prunus persica HOM05D003792 ORTHO05D003195 9.3e-09 65.1 101 41.6
VMungo0251G0642 Vigna mungo HOM05D003792 ORTHO05D003195 9.3e-09 65.1 226 29.6
Nitab4.5_0000287g0270 Nicotiana tabacum HOM05D003792 ORTHO05D003195 1.2e-08 64.7 191 31.4
THA.LOC104812575 Tarenaya hassleriana HOM05D003792 ORTHO05D003195 1.2e-08 64.7 249 30.5
Gorai.010G020000 Gossypium raimondii HOM05D003792 ORTHO05D003195 1.6e-08 64.3 216 31.9
Aa31LG2G16400 Aethionema arabicum HOM05D009953 ORTHO05D003195 2.1e-08 63.9 226 30.5
A09p20080 Brassica napus HOM05D003792 ORTHO05D003195 2.1e-08 63.9 219 29.7
C03p86190 Brassica napus HOM05D009953 ORTHO05D003195 2.1e-08 63.9 215 32.6
BraA09t37621Z Brassica rapa HOM05D003792 ORTHO05D003195 2.1e-08 63.9 219 29.7
TPR.G3791 Trifolium pratense HOM05D003792 ORTHO05D003195 2.1e-08 63.9 185 29.2
Actinidia29872 Actinidia chinensis HOM05D004168 ORTHO05D004999 2.7e-08 63.5 214 30.8
PGSC0003DMG400006224 Solanum tuberosum HOM05D011234 ORTHO05D003195 3.6e-08 63.2 192 31.2
Duzib093G2220 Durio zibethinus HOM05D003792 ORTHO05D003195 4.6e-08 62.8 215 31.6
Lsat_1_v5_gn_6_111920 Lactuca sativa HOM05D003792 ORTHO05D003195 4.6e-08 62.8 230 30.9
Gohir.D05G205900 Gossypium hirsutum HOM05D003792 ORTHO05D003195 6.1e-08 62.4 174 33.9
Gohir.D06G017100 Gossypium hirsutum HOM05D003792 ORTHO05D003195 6.1e-08 62.4 216 31.5
Sc15g0006120 Simmondsia chinensis HOM05D004168 ORTHO05D003195 7.9e-08 62.0 208 29.8
THA.LOC104814167 Tarenaya hassleriana HOM05D003792 ORTHO05D003195 7.9e-08 62.0 234 31.2
BolC3t20907H Brassica oleracea HOM05D009953 ORTHO05D003195 1.0e-07 61.6 214 32.2
ECA246G0047 Erigeron canadensis HOM05D003792 ORTHO05D003195 1.0e-07 61.6 198 31.3
Carub.0007s0642 Capsella rubella HOM05D009953 ORTHO05D003195 1.3e-07 61.2 225 31.1
MBI03_g13463_MAGBIO Magnolia biondii HOM05D003792 ORTHO05D003195 1.3e-07 61.2 181 30.4
Gohir.A05G202700 Gossypium hirsutum HOM05D003792 ORTHO05D003195 1.8e-07 60.8 178 31.5
Lsat_1_v5_gn_4_125741 Lactuca sativa HOM05D003792 ORTHO05D003195 1.8e-07 60.8 197 32.5
MELO3C018454.2 Cucumis melo HOM05D003792 ORTHO05D003195 2.3e-07 60.5 232 27.2
Thecc.08G006700 Theobroma cacao HOM05D003792 ORTHO05D003195 3.0e-07 60.1 215 30.2
BcaB03g11864 Brassica carinata HOM05D009953 ORTHO05D003195 5.1e-07 59.3 214 30.8
BcaB07g31033 Brassica carinata HOM05D003792 ORTHO05D003195 5.1e-07 59.3 219 30.6
C01p04800 Brassica napus HOM05D009953 ORTHO05D003195 5.1e-07 59.3 212 31.6
COL.COLO4_26514 Corchorus olitorius HOM05D003792 ORTHO05D003195 5.1e-07 59.3 221 30.8
Thhalv10026267m.g Eutrema salsugineum HOM05D009953 ORTHO05D003195 5.1e-07 59.3 214 29.4
Phvul.001G022200 Phaseolus vulgaris HOM05D003792 ORTHO05D003195 5.1e-07 59.3 198 29.3
Sp7g31720 Schrenkiella parvula HOM05D009953 ORTHO05D003195 6.7e-07 58.9 238 29.4
BcaC06g31740 Brassica carinata HOM05D003792 ORTHO05D003195 1.1e-06 58.2 203 31.0
BraA01t00428Z Brassica rapa HOM05D009953 ORTHO05D003195 1.1e-06 58.2 216 30.6
BraA03t15320Z Brassica rapa HOM05D009953 ORTHO05D003195 1.1e-06 58.2 183 32.8
Haze_17521 Corylus avellana HOM05D000207 ORTHO05D000606 1.1e-06 58.2 204 30.9
Gorai.009G212200 Gossypium raimondii HOM05D003792 ORTHO05D003195 1.1e-06 58.2 174 34.5
CARHR181240 Cardamine hirsuta HOM05D003792 ORTHO05D003195 1.5e-06 57.8 209 27.8
THA.LOC104822850 Tarenaya hassleriana HOM05D003792 ORTHO05D003195 1.5e-06 57.8 227 27.3
HanXRQChr14g0439641 Helianthus annuus HOM05D003792 ORTHO05D003195 1.9e-06 57.4 211 31.8
Lj5g0016368 Lotus japonicus HOM05D003792 ORTHO05D003195 1.9e-06 57.4 194 29.4
Sabra02G0098600 Salix brachista HOM05D000207 ORTHO05D003195 1.9e-06 57.4 98 39.8
Lalb_Chr22g0355111 Lupinus albus HOM05D003792 ORTHO05D003195 2.5e-06 57.0 159 26.4
Peaxi162Scf00016g01956 Petunia axillaris HOM05D011234 ORTHO05D003195 2.5e-06 57.0 231 29.0
Sed0006191 Sechium edule HOM05D003792 ORTHO05D003195 2.5e-06 57.0 197 26.9
A03p62520 Brassica napus HOM05D009953 ORTHO05D003195 3.3e-06 56.6 215 30.7
CARHR242110 Cardamine hirsuta HOM05D009953 ORTHO05D003195 4.3e-06 56.2 212 30.7
Migut.B00353 Erythranthe guttata HOM05D011234 ORTHO05D003195 4.3e-06 56.2 235 25.5
Sopen10g021380 Solanum pennellii HOM05D011234 ORTHO05D003195 4.3e-06 56.2 190 30.0
Cpa.g.sc49.18 Carica papaya HOM05D003792 ORTHO05D003195 7.4e-06 55.5 187 30.5
THA.LOC104807270 Tarenaya hassleriana HOM05D009953 ORTHO05D003195 7.4e-06 55.5 169 30.2
BolC7t46450H Brassica oleracea HOM05D009953 ORTHO05D003195 9.7e-06 55.1 215 31.2


User provided reference genes

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