Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR042G0827 Punica granatum HOM05D002306 ORTHO05D005773 6.9e-198 693.7 340 100.0
Manes.05G190400 Manihot esculenta HOM05D002306 ORTHO05D005773 3.7e-143 511.9 346 71.4
PGR142G2770 Punica granatum HOM05D002306 ORTHO05D005773 5.4e-142 508.1 338 72.2
CiPaw.06G045200 Carya illinoinensis HOM05D002306 ORTHO05D005773 7.0e-142 507.7 349 70.2
Cpa.g.sc3.100 Carica papaya HOM05D002306 ORTHO05D005773 9.2e-142 507.3 346 71.4
Dinv29264 Davidia involucrata HOM05D002306 ORTHO05D005773 2.7e-141 505.8 344 71.5
CANSAT21G2187 Cannabis sativa HOM05D002306 ORTHO05D005773 1.0e-140 503.8 344 70.6
CiPaw.05G198100 Carya illinoinensis HOM05D002306 ORTHO05D005773 1.7e-140 503.1 347 70.3
Eucgr.K00394 Eucalyptus grandis HOM05D002306 ORTHO05D005773 3.9e-140 501.9 328 72.9
Ciclev10020415m.g Citrus clementina HOM05D002306 ORTHO05D005773 3.3e-139 498.8 348 70.7
TWI39G0548 Tripterygium wilfordii HOM05D002306 ORTHO05D005773 4.3e-139 498.4 349 71.3
Manes.01G185000 Manihot esculenta HOM05D002306 ORTHO05D005773 7.3e-139 497.7 348 70.1
Prupe.2G313000 Prunus persica HOM05D002306 ORTHO05D005773 7.3e-139 497.7 345 70.4
Potri.012G017100 Populus trichocarpa HOM05D002306 ORTHO05D005773 9.5e-139 497.3 324 73.8
Thecc.03G200900 Theobroma cacao HOM05D002306 ORTHO05D005773 1.6e-138 496.5 344 70.6
MD07G1293200 Malus domestica HOM05D002306 ORTHO05D005773 2.1e-138 496.1 347 70.0
GSVIVG01038567001 Vitis vinifera HOM05D002306 ORTHO05D005773 2.1e-138 496.1 346 69.4
FAN01G0065 Fragaria x ananassa HOM05D002306 ORTHO05D005773 2.8e-138 495.7 342 70.2
FAN06G4818 Fragaria x ananassa HOM05D002306 ORTHO05D005773 2.8e-138 495.7 342 69.9
Nn3g18949 Nelumbo nucifera HOM05D002306 ORTHO05D005773 4.7e-138 495.0 342 68.4
Duzib084G0543 Durio zibethinus HOM05D002306 ORTHO05D005773 6.1e-138 494.6 345 69.9
FvH4_7g31980 Fragaria vesca HOM05D002306 ORTHO05D005773 1.4e-137 493.4 342 69.9
RcHm_v2.0_Chr1g0381481 Rosa chinensis HOM05D002306 ORTHO05D005773 1.4e-137 493.4 347 70.3
Atru.chr12.2238 Acer truncatum HOM05D002306 ORTHO05D005773 5.2e-137 491.5 356 68.0
Lalb_Chr01g0013731 Lupinus albus HOM05D002306 ORTHO05D005773 5.2e-137 491.5 350 66.3
Potri.015G011300 Populus trichocarpa HOM05D002306 ORTHO05D005773 5.2e-137 491.5 353 68.8
FAN03G1878 Fragaria x ananassa HOM05D002306 ORTHO05D005773 6.8e-137 491.1 344 69.2
Cfa016243 Carpinus fangiana HOM05D002306 ORTHO05D005773 8.9e-137 490.7 348 68.4
VMungo0647G1725 Vigna mungo HOM05D002306 ORTHO05D005773 1.2e-136 490.3 345 69.3
Duzib205G1406 Durio zibethinus HOM05D002306 ORTHO05D005773 2.6e-136 489.2 340 70.3
Haze_00198 Corylus avellana HOM05D002306 ORTHO05D005773 4.4e-136 488.4 348 68.4
MD01G1222600 Malus domestica HOM05D002306 ORTHO05D005773 7.5e-136 487.6 347 68.6
FAN10G2791 Fragaria x ananassa HOM05D002306 ORTHO05D005773 9.8e-136 487.3 370 65.7
Glyma.19G065800 Glycine max HOM05D002306 ORTHO05D005773 9.8e-136 487.3 345 69.6
Glyma.14G162400 Glycine max HOM05D002306 ORTHO05D005773 1.7e-135 486.5 345 68.7
Actinidia34230 Actinidia chinensis HOM05D002306 ORTHO05D005773 2.2e-135 486.1 342 69.9
Phvul.001G075000 Phaseolus vulgaris HOM05D002306 ORTHO05D005773 4.9e-135 485.0 345 68.1
CSS0036676 Camellia sinensis var. sinensis HOM05D002306 ORTHO05D005773 8.3e-135 484.2 345 67.8
SalBow4G3229 Salvia bowleyana HOM05D002306 ORTHO05D005773 1.4e-134 483.4 350 66.3
FAN10G0091 Fragaria x ananassa HOM05D002306 ORTHO05D005773 1.9e-134 483.0 370 65.4
Medtr1g007860 Medicago truncatula HOM05D002306 ORTHO05D005773 2.4e-134 482.6 348 65.5
Nn1g00292 Nelumbo nucifera HOM05D002306 ORTHO05D005773 2.4e-134 482.6 339 68.4
ClCG01G000390 Citrullus lanatus HOM05D002306 ORTHO05D005773 3.2e-134 482.3 344 68.6
PSO135G0144 Papaver somniferum HOM05D002306 ORTHO05D005773 4.1e-134 481.9 333 67.0
Actinidia06142 Actinidia chinensis HOM05D002306 ORTHO05D005773 7.0e-134 481.1 343 69.1
Gohir.A12G249000 Gossypium hirsutum HOM05D002306 ORTHO05D005773 9.2e-134 480.7 343 68.5
vmacro10129 Vaccinium macrocarpon HOM05D002306 ORTHO05D005773 9.2e-134 480.7 344 69.2
THA.LOC104799971 Tarenaya hassleriana HOM05D002306 ORTHO05D005773 1.6e-133 479.9 344 67.2
Gohir.D12G249800 Gossypium hirsutum HOM05D002306 ORTHO05D005773 2.0e-133 479.6 343 68.5
Aqoxy6G02068 Aquilegia oxysepala HOM05D002306 ORTHO05D005773 2.7e-133 479.2 346 65.0
Migut.F00200 Erythranthe guttata HOM05D002306 ORTHO05D005773 2.7e-133 479.2 347 67.4
CsaV3_5G000460 Cucumis sativus L. HOM05D002306 ORTHO05D005773 3.5e-133 478.8 344 68.6
Gorai.008G267900 Gossypium raimondii HOM05D002306 ORTHO05D005773 3.5e-133 478.8 343 67.9
QL09p008623 Quercus lobata HOM05D002306 ORTHO05D005773 6.0e-133 478.0 331 69.2
Aa31LG3G9420 Aethionema arabicum HOM05D002306 ORTHO05D005773 7.8e-133 477.6 384 62.5
Hma1.2p1_1587F.1_g292250 Hydrangea macrophylla HOM05D002306 ORTHO05D005773 7.8e-133 477.6 345 68.4
Lj1g0011159 Lotus japonicus HOM05D002306 ORTHO05D005773 1.3e-132 476.9 351 65.2
Eucgr.A01449 Eucalyptus grandis HOM05D002306 ORTHO05D005773 2.3e-132 476.1 335 70.7
MELO3C005890.2 Cucumis melo HOM05D002306 ORTHO05D005773 5.0e-132 474.9 344 67.7
PGSC0003DMG401018530 Solanum tuberosum HOM05D002306 ORTHO05D005773 5.0e-132 474.9 350 67.4
DCAR_020335 Daucus carota HOM05D002306 ORTHO05D005773 6.6e-132 474.6 346 67.9
Nitab4.5_0005491g0070 Nicotiana tabacum HOM05D002306 ORTHO05D005773 6.6e-132 474.6 350 67.4
PSO384G1073 Papaver somniferum HOM05D002306 ORTHO05D005773 8.6e-132 474.2 333 66.7
Ca_12784_v3 Cicer arietinum L. HOM05D002306 ORTHO05D005773 1.1e-131 473.8 353 64.0
Ca_12788_v3 Cicer arietinum L. HOM05D002306 ORTHO05D005773 1.1e-131 473.8 353 64.0
CAN.G481.26 Capsicum annuum HOM05D002306 ORTHO05D005773 1.5e-131 473.4 344 67.4
CARHR266070 Cardamine hirsuta HOM05D002306 ORTHO05D005773 1.5e-131 473.4 345 65.8
Psat6g034960 Pisum sativum HOM05D002306 ORTHO05D005773 1.5e-131 473.4 357 63.0
Sc13g0009860 Simmondsia chinensis HOM05D002306 ORTHO05D005773 1.9e-131 473.0 340 67.4
Carub.0008s1325 Capsella rubella HOM05D002306 ORTHO05D005773 2.5e-131 472.6 339 67.3
Hund11654 Selenicereus undatus HOM05D002306 ORTHO05D005773 4.3e-131 471.9 337 66.5
Peaxi162Scf00740g00143 Petunia axillaris HOM05D002306 ORTHO05D005773 5.6e-131 471.5 344 66.9
arahy.Tifrunner.gnm1.ann1.FPLI9C Arachis hypogaea HOM05D002306 ORTHO05D005773 9.5e-131 470.7 354 64.1
Thhalv10013609m.g Eutrema salsugineum HOM05D002306 ORTHO05D005773 1.2e-130 470.3 339 66.4
Rhsim09G0206400 Rhododendron simsii HOM05D002306 ORTHO05D005773 2.1e-130 469.5 344 68.0
AUR62019412 Chenopodium quinoa HOM05D002306 ORTHO05D005773 2.8e-130 469.2 345 65.2
Nitab4.5_0000548g0060 Nicotiana tabacum HOM05D002306 ORTHO05D005773 3.6e-130 468.8 350 66.0
MBI06_g46366_MAGBIO Magnolia biondii HOM05D002306 ORTHO05D005773 4.7e-130 468.4 342 65.8
Hund21009 Selenicereus undatus HOM05D002306 ORTHO05D005773 6.2e-130 468.0 345 65.5
arahy.Tifrunner.gnm1.ann1.4T5RFS Arachis hypogaea HOM05D002306 ORTHO05D005773 8.0e-130 467.6 354 63.8
BraA03t10835Z Brassica rapa HOM05D002306 ORTHO05D005773 8.0e-130 467.6 347 65.1
Sopen03g022820 Solanum pennellii HOM05D002306 ORTHO05D005773 8.0e-130 467.6 344 66.0
SGA_v2.0_scaffold44G16812 Striga asiatica HOM05D002306 ORTHO05D005773 1.1e-129 467.2 369 64.5
Solyc03g083010.3 Solanum lycopersicum HOM05D002306 ORTHO05D005773 1.8e-129 466.5 344 66.0
CDE04G0267 Ceratophyllum demersum HOM05D002306 ORTHO05D005773 3.1e-129 465.7 335 64.8
AT5G53050 Arabidopsis thaliana HOM05D002306 ORTHO05D005773 4.0e-129 465.3 345 66.1
Actinidia08661 Actinidia chinensis HOM05D002306 ORTHO05D005773 8.9e-129 464.2 337 68.0
EL10Ac3g05271 Beta vulgaris HOM05D002306 ORTHO05D005773 8.9e-129 464.2 339 66.1
AUR62006082 Chenopodium quinoa HOM05D002306 ORTHO05D005773 1.5e-128 463.4 345 64.6
Ah.13g070360 Amaranthus hybridus HOM05D002306 ORTHO05D005773 2.0e-128 463.0 334 66.5
HanXRQChr15g0485691 Helianthus annuus HOM05D002306 ORTHO05D005773 2.0e-128 463.0 344 64.0
A03p15450 Brassica napus HOM05D002306 ORTHO05D005773 2.6e-128 462.6 347 64.3
Sabra15G0009300 Salix brachista HOM05D002306 ORTHO05D005773 3.4e-128 462.2 416 58.2
ECA232G4612 Erigeron canadensis HOM05D002306 ORTHO05D005773 4.4e-128 461.8 344 64.8
Sed0011455 Sechium edule HOM05D002306 ORTHO05D005773 4.4e-128 461.8 336 67.0
BcaB01g04217 Brassica carinata HOM05D002306 ORTHO05D005773 9.8e-128 460.7 347 64.3
C03p18010 Brassica napus HOM05D002306 ORTHO05D005773 1.3e-127 460.3 348 64.1
BolC3t14206H Brassica oleracea HOM05D002306 ORTHO05D005773 1.3e-127 460.3 348 64.1
BraA03t10837Z Brassica rapa HOM05D002306 ORTHO05D005773 1.3e-127 460.3 353 63.7
Sabra12G0015300 Salix brachista HOM05D002306 ORTHO05D005773 1.3e-127 460.3 408 58.8
Cc02_g01380 Coffea canephora HOM05D002306 ORTHO05D005773 2.9e-127 459.1 347 65.1
AL8G27680 Arabidopsis lyrata HOM05D002306 ORTHO05D005773 6.4e-127 458.0 388 60.6
BcaC01g06217 Brassica carinata HOM05D002306 ORTHO05D005773 8.3e-127 457.6 348 63.8
A03p15420 Brassica napus HOM05D002306 ORTHO05D005773 8.3e-127 457.6 340 64.7
Lsat_1_v5_gn_9_49801 Lactuca sativa HOM05D002306 ORTHO05D005773 8.3e-127 457.6 344 65.7
Sp6g15210 Schrenkiella parvula HOM05D002306 ORTHO05D005773 8.3e-127 457.6 339 65.2
Sp7g25780 Schrenkiella parvula HOM05D002306 ORTHO05D005773 8.3e-127 457.6 342 65.2
BcaC04g20512 Brassica carinata HOM05D002306 ORTHO05D005773 1.4e-126 456.8 345 63.8
BolC9t57152H Brassica oleracea HOM05D002306 ORTHO05D005773 1.4e-126 456.8 345 63.8
Lsat_1_v5_gn_2_136261 Lactuca sativa HOM05D002306 ORTHO05D005773 2.4e-126 456.1 335 66.0
BcaB08g35665 Brassica carinata HOM05D002306 ORTHO05D005773 5.4e-126 454.9 339 64.9
Oeu037052.1 Olea europaea HOM05D002306 ORTHO05D005773 5.4e-126 454.9 341 66.9
ATR0602G226 Amborella trichopoda HOM05D002306 ORTHO05D005773 1.6e-125 453.4 340 65.0
HanXRQChr04g0100471 Helianthus annuus HOM05D002306 ORTHO05D005773 7.8e-125 451.1 341 64.8
A10p10540 Brassica napus HOM05D002306 ORTHO05D005773 1.0e-124 450.7 339 64.3
Actinidia08663 Actinidia chinensis HOM05D002306 ORTHO05D005773 1.7e-124 449.9 340 66.5
BraA10t43138Z Brassica rapa HOM05D002306 ORTHO05D005773 2.3e-124 449.5 339 64.3
Os05g0542200 Oryza sativa ssp. japonica HOM05D002306 ORTHO05D005773 3.9e-124 448.7 340 64.1
Zm00001eb294430 Zea mays HOM05D002306 ORTHO05D005773 1.9e-123 446.4 340 63.8
C09p42760 Brassica napus HOM05D002306 ORTHO05D005773 1.1e-121 440.7 373 58.7
Zm00001eb342430 Zea mays HOM05D002306 ORTHO05D005773 3.4e-120 435.6 391 57.3
HPP92_010499 Vanilla planifolia HOM05D002306 ORTHO05D005773 2.2e-119 433.0 336 62.2
Sed0009393 Sechium edule HOM05D002306 ORTHO05D005773 1.0e-116 424.1 303 69.0
Oeu060994.1 Olea europaea HOM05D002306 ORTHO05D005773 2.8e-114 416.0 353 61.2
unitig_748.g7291 Utricularia gibba HOM05D002306 ORTHO05D005773 8.9e-113 411.0 334 60.2
Mapoly0155s0003 Marchantia polymorpha HOM05D002306 ORTHO05D005773 6.0e-101 371.7 390 48.2
Lj3C903G6 Lonicera japonica HOM05D002306 ORTHO05D005773 7.3e-99 364.8 226 75.7
AagrBONN_evm.TU.Sc2ySwM_228.3658 Anthoceros agrestis HOM05D002306 ORTHO05D005773 3.5e-93 345.9 334 51.8
Pp3c4_28770 Physcomitrium patens HOM05D002306 ORTHO05D005773 4.8e-90 335.5 318 50.9
CBR_g39074 Chara braunii HOM05D002306 ORTHO05D005773 4.9e-87 325.5 358 45.3
COL.COLO4_16788 Corchorus olitorius HOM05D002306 ORTHO05D005773 9.6e-83 311.2 198 74.2
CBR_g52250 Chara braunii HOM05D002306 ORTHO05D005773 1.4e-81 307.4 332 47.3
SHI02360 Sapria himalayana HOM05D002306 ORTHO05D005773 3.1e-81 306.2 287 56.1
SMO147G0069 Selaginella moellendorffii HOM05D002306 ORTHO05D005773 3.2e-78 296.2 276 53.6
QL05p052295 Quercus lobata HOM05D002306 ORTHO05D005773 1.4e-68 264.2 177 70.6
unitig_0.g2458 Utricularia gibba HOM05D000451 ORTHO05D000351 1.8e-68 263.8 287 49.8
MBI06_g36471_MAGBIO Magnolia biondii HOM05D002306 ORTHO05D005773 7.4e-67 258.5 248 55.2
SGA_v2.0_scaffold192G40528 Striga asiatica HOM05D005626 ORTHO05D007032 3.4e-64 249.6 343 44.0
Cre11.g481250 Chlamydomonas reinhardtii HOM05D002306 ORTHO05D005773 1.4e-44 184.5 289 37.7
Lsat_1_v5_gn_7_80100 Lactuca sativa HOM05D002306 ORTHO05D005773 2.8e-42 176.8 132 59.8
CDE03G0512 Ceratophyllum demersum HOM05D002306 ORTHO05D005773 2.4e-41 173.7 125 59.2
Ciclev10023844m.g Citrus clementina HOM05D002306 ORTHO05D005773 5.9e-40 169.1 139 61.9
Cre02.g077451 Chlamydomonas reinhardtii HOM05D002306 ORTHO05D005773 5.5e-38 162.5 323 33.7
PRCOL_00002303 Prasinoderma coloniale HOM05D002306 ORTHO05D005773 2.3e-31 140.6 354 29.9
COL.COLO4_16789 Corchorus olitorius HOM05D002476 ORTHO05D002652 1.2e-27 128.3 114 57.9
Lj3C903G5 Lonicera japonica HOM05D002306 ORTHO05D005773 2.2e-26 124.0 114 55.3
Actinidia03176 Actinidia chinensis HOM05D002306 ORTHO05D005773 5.4e-25 119.4 83 66.3
TPR.G40491 Trifolium pratense HOM05D002306 ORTHO05D005773 1.6e-21 107.8 61 80.3
CDE03G0170 Ceratophyllum demersum HOM05D002306 ORTHO05D005773 6.2e-21 105.9 94 59.6
SEGI_37240 Sequoiadendron giganteum HOM05D002306 ORTHO05D005773 8.0e-21 105.5 58 81.0
SEGI_09966 Sequoiadendron giganteum HOM05D002306 ORTHO05D005773 1.3e-18 98.2 127 45.7
Lsat_1_v5_gn_5_184380 Lactuca sativa HOM05D000942 ORTHO05D014303 8.3e-18 95.5 61 72.1
SEGI_13792 Sequoiadendron giganteum HOM05D002306 ORTHO05D005773 1.6e-16 91.3 68 60.3
Oeu053931.1 Olea europaea HOM05D002306 ORTHO05D005773 1.0e-15 88.6 68 61.8
Medtr5g071310 Medicago truncatula HOM05D000009 ORTHO05D000008 1.9e-14 84.3 130 40.0
TAR629G2756 Trochodendron aralioides HOM05D002306 ORTHO05D005773 9.5e-14 82.0 71 56.3
SEGI_03713 Sequoiadendron giganteum HOM05D002306 ORTHO05D036569 8.9e-12 75.5 49 67.3
Lsat_1_v5_gn_7_88240 Lactuca sativa HOM05D000942 ORTHO05D014303 4.4e-11 73.2 121 39.7
Nitab4.5_0010777g0010 Nicotiana tabacum HOM05D000363 ORTHO05D000236 1.3e-07 61.6 341 22.0
PSO170G0253 Papaver somniferum HOM05D000363 ORTHO05D000236 1.3e-07 61.6 338 21.9
Nn1g05792 Nelumbo nucifera HOM05D000363 ORTHO05D000236 2.3e-07 60.8 346 25.7
CDE08G0389 Ceratophyllum demersum HOM05D000363 ORTHO05D000236 3.0e-07 60.5 77 41.6
GSVIVG01018184001 Vitis vinifera HOM05D000363 ORTHO05D000236 3.9e-07 60.1 150 32.0
Medtr5g070490 Medicago truncatula HOM05D000009 ORTHO05D000008 5.1e-07 59.7 98 39.8
Migut.D00141 Erythranthe guttata HOM05D000363 ORTHO05D000236 8.6e-07 58.9 344 22.4
QL11p045365 Quercus lobata HOM05D000363 ORTHO05D000236 1.1e-06 58.5 147 34.0
PSO170G6498 Papaver somniferum HOM05D000363 ORTHO05D000236 1.5e-06 58.2 341 23.2
AagrBONN_evm.TU.Sc2ySwM_362.2316 Anthoceros agrestis HOM05D000363 ORTHO05D000236 1.9e-06 57.8 158 31.6
MELO3C017947.2 Cucumis melo HOM05D000363 ORTHO05D000236 1.9e-06 57.8 273 24.5
Nn5g29722 Nelumbo nucifera HOM05D000363 ORTHO05D000236 1.9e-06 57.8 265 25.3
CiPaw.08G093800 Carya illinoinensis HOM05D000363 ORTHO05D000236 2.5e-06 57.4 163 28.8
Eucgr.B01907 Eucalyptus grandis HOM05D000363 ORTHO05D000236 2.5e-06 57.4 148 31.8
PSO407G0260 Papaver somniferum HOM05D000363 ORTHO05D000236 2.5e-06 57.4 348 24.1
SGA_v2.0_scaffold2G01385 Striga asiatica HOM05D000363 ORTHO05D000236 2.5e-06 57.4 267 25.5
HanXRQChr01g0001081 Helianthus annuus HOM05D000363 ORTHO05D000236 3.3e-06 57.0 269 20.4
PSO407G0103 Papaver somniferum HOM05D000363 ORTHO05D000236 4.3e-06 56.6 147 29.3
AagrBONN_evm.TU.Sc2ySwM_362.2317 Anthoceros agrestis HOM05D000363 ORTHO05D000236 7.3e-06 55.8 158 31.0
Cpa.g.sc6.184 Carica papaya HOM05D000363 ORTHO05D000236 7.3e-06 55.8 147 30.6
PSO407G0386 Papaver somniferum HOM05D000363 ORTHO05D000236 9.5e-06 55.5 147 27.9


User provided reference genes

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