Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR042G0393 Punica granatum HOM05D006137 ORTHO05D007697 3.3e-223 778.1 398 100.0
GSVIVG01013108001 Vitis vinifera HOM05D006137 ORTHO05D007697 1.5e-138 496.9 369 69.4
TWI15G1160 Tripterygium wilfordii HOM05D006137 ORTHO05D007697 4.2e-138 495.4 344 71.8
Ciclev10001458m.g Citrus clementina HOM05D006137 ORTHO05D007697 7.2e-138 494.6 385 65.7
Duzib068G1414 Durio zibethinus HOM05D006137 ORTHO05D007697 2.7e-137 492.7 355 70.7
Potri.003G096600 Populus trichocarpa HOM05D006137 ORTHO05D007697 6.1e-137 491.5 383 67.6
Dinv25255 Davidia involucrata HOM05D006137 ORTHO05D007697 1.8e-136 490.0 355 70.7
Gohir.D12G208800 Gossypium hirsutum HOM05D006137 ORTHO05D007697 1.8e-136 490.0 389 67.1
Gorai.008G224300 Gossypium raimondii HOM05D006137 ORTHO05D007697 5.2e-136 488.4 389 67.1
CiPaw.11G098100 Carya illinoinensis HOM05D006137 ORTHO05D007697 1.5e-135 486.9 378 69.0
MD06G1026400 Malus domestica HOM05D006137 ORTHO05D007697 2.0e-135 486.5 357 69.5
Gohir.A12G206400 Gossypium hirsutum HOM05D006137 ORTHO05D007697 7.4e-135 484.6 389 66.8
Thecc.03G309800 Theobroma cacao HOM05D006137 ORTHO05D007697 4.8e-134 481.9 356 68.8
FvH4_5g23010 Fragaria vesca HOM05D006137 ORTHO05D007697 9.1e-133 477.6 357 67.8
FAN08G1929 Fragaria x ananassa HOM05D006137 ORTHO05D007697 1.2e-132 477.2 357 67.2
MELO3C013825.2 Cucumis melo HOM05D006137 ORTHO05D007697 5.9e-132 474.9 359 66.6
RcHm_v2.0_Chr7g0211741 Rosa chinensis HOM05D006137 ORTHO05D007697 7.7e-132 474.6 321 72.0
FAN04G0555 Fragaria x ananassa HOM05D006137 ORTHO05D007697 3.8e-131 472.2 357 66.1
CsaV3_3G001380 Cucumis sativus L. HOM05D006137 ORTHO05D007697 1.1e-130 470.7 387 63.6
Lj3g0008594 Lotus japonicus HOM05D006137 ORTHO05D007697 1.5e-130 470.3 369 64.5
CSS0021967 Camellia sinensis var. sinensis HOM05D006137 ORTHO05D007697 1.9e-130 469.9 391 62.4
TAR629G2895 Trochodendron aralioides HOM05D006137 ORTHO05D007697 5.5e-130 468.4 378 66.1
Atru.chr6.1520 Acer truncatum HOM05D006137 ORTHO05D007697 7.2e-130 468.0 394 65.5
COL.COLO4_16947 Corchorus olitorius HOM05D006137 ORTHO05D007697 7.2e-130 468.0 302 74.5
Lalb_Chr09g0325501 Lupinus albus HOM05D006137 ORTHO05D007697 7.2e-130 468.0 320 70.9
VMungo1215G0535 Vigna mungo HOM05D006137 ORTHO05D007697 7.2e-130 468.0 358 65.4
FvH4_2g06760 Fragaria vesca HOM05D006137 ORTHO05D007697 6.1e-129 464.9 360 66.1
AT2G35500 Arabidopsis thaliana HOM05D006137 ORTHO05D007697 1.0e-128 464.2 333 69.7
Carub.0004s1719 Capsella rubella HOM05D006137 ORTHO05D007697 1.8e-128 463.4 388 63.7
FAN18G2668 Fragaria x ananassa HOM05D006137 ORTHO05D007697 1.8e-128 463.4 303 73.9
FAN13G2862 Fragaria x ananassa HOM05D006137 ORTHO05D007697 2.3e-128 463.0 374 63.9
Phvul.002G137400 Phaseolus vulgaris HOM05D006137 ORTHO05D007697 3.0e-128 462.6 348 65.2
Sabra03G0065200 Salix brachista HOM05D006137 ORTHO05D007697 3.0e-128 462.6 312 71.8
TPR.G19427 Trifolium pratense HOM05D006137 ORTHO05D007697 4.0e-128 462.2 367 62.9
Medtr5g029550 Medicago truncatula HOM05D006137 ORTHO05D007697 5.2e-128 461.8 367 63.2
CANSAT21G0809 Cannabis sativa HOM05D006137 ORTHO05D007697 8.8e-128 461.1 349 67.0
Glyma.01G014900 Glycine max HOM05D006137 ORTHO05D007697 1.2e-127 460.7 358 64.2
arahy.Tifrunner.gnm1.ann1.3JZK2J Arachis hypogaea HOM05D006137 ORTHO05D007697 1.5e-127 460.3 320 69.1
arahy.Tifrunner.gnm1.ann1.J91B8N Arachis hypogaea HOM05D006137 ORTHO05D007697 1.5e-127 460.3 320 69.1
BcaB06g28845 Brassica carinata HOM05D006137 ORTHO05D007697 2.0e-127 459.9 361 65.4
CSS0050317 Camellia sinensis var. sinensis HOM05D006137 ORTHO05D007697 5.7e-127 458.4 312 71.8
C04p64320 Brassica napus HOM05D006137 ORTHO05D007697 7.5e-127 458.0 336 68.2
BolC4t27919H Brassica oleracea HOM05D006137 ORTHO05D007697 7.5e-127 458.0 336 68.2
CANSAT21G0548 Cannabis sativa HOM05D006137 ORTHO05D007697 9.7e-127 457.6 394 62.9
AL4G31550 Arabidopsis lyrata HOM05D006137 ORTHO05D007697 1.7e-126 456.8 392 63.3
Thhalv10016768m.g Eutrema salsugineum HOM05D006137 ORTHO05D007697 1.7e-126 456.8 391 62.4
FAN18G2637 Fragaria x ananassa HOM05D006137 ORTHO05D007697 2.2e-126 456.4 429 58.0
A04p26930 Brassica napus HOM05D006137 ORTHO05D007697 3.7e-126 455.7 361 64.8
ClCG10G001310 Citrullus lanatus HOM05D006137 ORTHO05D007697 6.3e-126 454.9 446 56.1
BraA04t18192Z Brassica rapa HOM05D006137 ORTHO05D007697 1.1e-125 454.1 388 61.6
Sp4g17720 Schrenkiella parvula HOM05D006137 ORTHO05D007697 1.1e-125 454.1 390 61.8
CARHR129650 Cardamine hirsuta HOM05D006137 ORTHO05D007697 1.4e-125 453.8 396 61.9
Hma1.2p1_1027F.1_g249480 Hydrangea macrophylla HOM05D006137 ORTHO05D007697 4.1e-125 452.2 333 68.2
Nn3g19394 Nelumbo nucifera HOM05D006137 ORTHO05D007697 4.1e-125 452.2 344 67.4
BcaC02g07708 Brassica carinata HOM05D006137 ORTHO05D007697 1.7e-123 446.8 301 72.1
Cc08_g03270 Coffea canephora HOM05D006137 ORTHO05D007697 1.5e-122 443.7 395 59.2
Aqoxy2G03876 Aquilegia oxysepala HOM05D006137 ORTHO05D007697 2.5e-122 443.0 316 68.7
Psat2g138120 Pisum sativum HOM05D006137 ORTHO05D007697 3.6e-121 439.1 371 61.2
Sed0022354 Sechium edule HOM05D006137 ORTHO05D007697 1.0e-120 437.6 315 68.3
PSO782G3150 Papaver somniferum HOM05D006137 ORTHO05D007697 1.2e-119 434.1 388 58.0
Rhsim11G0021000 Rhododendron simsii HOM05D006137 ORTHO05D007697 3.4e-119 432.6 400 59.2
EL10Ac2g03238 Beta vulgaris HOM05D006137 ORTHO05D007697 4.4e-119 432.2 301 69.8
Peaxi162Scf00170g00615 Petunia axillaris HOM05D006137 ORTHO05D007697 5.7e-119 431.8 372 60.5
Solyc08g076410.4 Solanum lycopersicum HOM05D006137 ORTHO05D007697 1.3e-118 430.6 353 62.3
PGSC0003DMG400014792 Solanum tuberosum HOM05D006137 ORTHO05D007697 2.2e-118 429.9 352 61.9
Eucgr.E00233 Eucalyptus grandis HOM05D006137 ORTHO05D007697 3.7e-118 429.1 297 71.7
QL12p001513 Quercus lobata HOM05D006137 ORTHO05D007697 3.7e-118 429.1 337 66.8
Sopen08g024990 Solanum pennellii HOM05D006137 ORTHO05D007697 6.3e-118 428.3 395 58.5
CAN.G726.20 Capsicum annuum HOM05D006137 ORTHO05D007697 8.3e-118 427.9 312 65.4
DCAR_008226 Daucus carota HOM05D006137 ORTHO05D007697 2.4e-117 426.4 301 69.8
Nitab4.5_0002190g0020 Nicotiana tabacum HOM05D006137 ORTHO05D007697 4.1e-117 425.6 376 59.8
THA.LOC104814417 Tarenaya hassleriana HOM05D006137 ORTHO05D007697 7.0e-117 424.9 339 64.9
Oeu017078.1 Olea europaea HOM05D006137 ORTHO05D007697 1.2e-116 424.1 302 67.5
HanXRQChr04g0098961 Helianthus annuus HOM05D006137 ORTHO05D007697 2.7e-116 422.9 378 58.5
ECA233G6209 Erigeron canadensis HOM05D006137 ORTHO05D007697 3.5e-116 422.5 360 60.8
Prupe.5G028300 Prunus persica HOM05D006137 ORTHO05D007697 4.2e-114 415.6 315 68.3
PSO063G4597 Papaver somniferum HOM05D006137 ORTHO05D007697 5.5e-114 415.2 300 67.0
Aa31LG9G15490 Aethionema arabicum HOM05D006137 ORTHO05D007697 9.5e-114 414.5 267 75.7
FAN24G0436 Fragaria x ananassa HOM05D006137 ORTHO05D007697 5.7e-111 405.2 294 68.7
Sc24g0002950 Simmondsia chinensis HOM05D006137 ORTHO05D007697 2.2e-110 403.3 314 66.2
MSTRG.24846 Avicennia marina HOM05D006137 ORTHO05D007697 2.8e-110 402.9 325 61.8
unitig_748.g7545 Utricularia gibba HOM05D006137 ORTHO05D007697 1.8e-109 400.2 356 58.4
Ah.09g233490 Amaranthus hybridus HOM05D006137 ORTHO05D007697 3.2e-109 399.4 372 56.7
Lsat_1_v5_gn_6_3681 Lactuca sativa HOM05D006137 ORTHO05D007697 5.4e-109 398.7 390 57.2
Nitab4.5_0003416g0030 Nicotiana tabacum HOM05D006137 ORTHO05D007697 5.9e-108 395.2 370 56.5
CDE06G2536 Ceratophyllum demersum HOM05D006137 ORTHO05D007697 5.6e-106 388.7 393 55.7
Migut.A01172 Erythranthe guttata HOM05D006137 ORTHO05D007697 7.3e-106 388.3 375 55.7
HPP92_014848 Vanilla planifolia HOM05D006137 ORTHO05D007697 2.8e-105 386.3 311 60.1
vmacro08163 Vaccinium macrocarpon HOM05D006137 ORTHO05D007697 8.0e-105 384.8 272 69.1
Os10g0577700 Oryza sativa ssp. japonica HOM05D006137 ORTHO05D007697 2.6e-103 379.8 364 53.6
SGA_v2.0_scaffold36G14297 Striga asiatica HOM05D006137 ORTHO05D007697 3.6e-97 359.4 337 57.3
Zm00001eb025030 Zea mays HOM05D006137 ORTHO05D007697 2.3e-96 356.7 358 52.8
Oeu019613.1 Olea europaea HOM05D006137 ORTHO05D007697 2.0e-95 353.6 322 57.8
Lj2A232T29 Lonicera japonica HOM05D006137 ORTHO05D007697 5.8e-95 352.1 327 58.4
Haze_08142 Corylus avellana HOM05D006137 ORTHO05D007697 1.3e-94 350.9 524 44.3
ATR0829G218 Amborella trichopoda HOM05D006137 ORTHO05D007697 1.9e-93 347.1 277 62.8
FAN20G1935 Fragaria x ananassa HOM05D006137 ORTHO05D007697 3.2e-93 346.3 314 58.9
Oeu002327.1 Olea europaea HOM05D006137 ORTHO05D007697 7.8e-92 341.7 225 72.4
SEGI_14560 Sequoiadendron giganteum HOM05D006137 ORTHO05D007697 3.9e-91 339.3 315 54.9
Eucgr.E00231 Eucalyptus grandis HOM05D006137 ORTHO05D007697 1.1e-90 337.8 268 65.7
Oeu019614.1 Olea europaea HOM05D006137 ORTHO05D007697 2.3e-88 330.1 322 55.3
Mapoly0006s0263 Marchantia polymorpha HOM05D006137 ORTHO05D007697 1.2e-84 317.8 307 50.8
SMO228G0118 Selaginella moellendorffii HOM05D006137 ORTHO05D007697 3.2e-77 293.1 303 48.8
Pp3c12_17740 Physcomitrium patens HOM05D006137 ORTHO05D007697 2.3e-75 287.0 362 43.6
AagrBONN_evm.TU.Sc2ySwM_344.1996 Anthoceros agrestis HOM05D006137 ORTHO05D007697 4.8e-73 279.3 300 47.0
Manes.15G185701 Manihot esculenta HOM05D006137 ORTHO05D007697 1.3e-70 271.2 261 59.4
Ca_25185_v3 Cicer arietinum L. HOM05D006137 ORTHO05D007697 4.0e-64 249.6 231 55.8
Hund09822 Selenicereus undatus HOM05D006137 ORTHO05D007697 5.5e-61 239.2 152 77.6
AUR62002644 Chenopodium quinoa HOM05D006137 ORTHO05D007697 1.6e-57 227.6 197 58.4
C03p78000 Brassica napus HOM05D006137 ORTHO05D007697 2.1e-49 200.7 162 64.2
Oeu033557.2 Olea europaea HOM05D006137 ORTHO05D007697 1.7e-46 191.0 195 51.8
AUR62040998 Chenopodium quinoa HOM05D006137 ORTHO05D007697 7.9e-44 182.2 136 61.0
BolC1t02019H Brassica oleracea HOM05D006137 ORTHO05D007697 1.0e-43 181.8 164 59.1
AUR62002645 Chenopodium quinoa HOM05D006137 ORTHO05D007697 3.9e-43 179.9 220 45.5
Hund09821 Selenicereus undatus HOM05D006137 ORTHO05D000006 4.5e-39 166.4 129 56.6
BolC3t20061H Brassica oleracea HOM05D006137 ORTHO05D007697 1.0e-38 165.2 164 54.3
C01p20920 Brassica napus HOM05D006137 ORTHO05D007697 2.9e-38 163.7 164 54.3
Glyma.07G152633 Glycine max HOM05D006137 ORTHO05D007697 1.9e-37 161.0 114 65.8
CBR_g18978 Chara braunii HOM05D006137 ORTHO05D007697 7.4e-34 149.1 189 44.4
MCO11G470 Micromonas commoda HOM05D006137 ORTHO05D007697 4.2e-29 133.3 198 35.4
AUR62040999 Chenopodium quinoa HOM05D006137 ORTHO05D007697 2.3e-27 127.5 110 60.9
Medtr1g009450 Medicago truncatula HOM05D006137 ORTHO05D007697 3.1e-24 117.1 126 53.2
PRCOL_00002339 Prasinoderma coloniale HOM05D006137 ORTHO05D007697 3.5e-23 113.6 195 33.3
C02p41610 Brassica napus HOM05D006137 ORTHO05D007697 1.8e-11 74.7 40 80.0
BolC2t10179H Brassica oleracea HOM05D006137 ORTHO05D007697 1.8e-11 74.7 40 80.0
BcaC09g50780 Brassica carinata HOM05D006137 ORTHO05D007697 1.2e-10 72.0 97 47.4
BolC2t11174H Brassica oleracea HOM05D006137 ORTHO05D007697 1.8e-08 64.7 31 83.9
Cre16.g659850 Chlamydomonas reinhardtii HOM05D006137 ORTHO05D007697 4.1e-08 63.5 202 25.7
Mapoly0089s0033 Marchantia polymorpha HOM05D002058 ORTHO05D003758 2.0e-07 61.2 107 38.3
SEGI_36463 Sequoiadendron giganteum HOM05D002058 ORTHO05D009216 3.8e-06 57.0 133 30.1
AT3G26900 Arabidopsis thaliana HOM05D002058 ORTHO05D009216 6.5e-06 56.2 153 30.7


User provided reference genes

Program Settings