Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR042G0366 Punica granatum HOM05D005493 ORTHO05D007154 3.1e-174 615.1 342 100.0
TWI38G1153 Tripterygium wilfordii HOM05D005493 ORTHO05D007154 6.9e-105 384.8 319 71.2
CiPaw.10G081900 Carya illinoinensis HOM05D005493 ORTHO05D007154 3.4e-104 382.5 303 69.6
Thecc.06G236400 Theobroma cacao HOM05D005493 ORTHO05D007154 3.8e-103 379.0 319 66.8
Sed0001140 Sechium edule HOM05D005493 ORTHO05D007154 6.5e-103 378.3 307 70.7
TAR626G1878 Trochodendron aralioides HOM05D005493 ORTHO05D007154 1.4e-102 377.1 323 65.0
TWI63G0139 Tripterygium wilfordii HOM05D005493 ORTHO05D007154 4.2e-102 375.6 314 67.2
Manes.13G088900 Manihot esculenta HOM05D005493 ORTHO05D007154 1.2e-101 374.0 323 66.3
Lsat_1_v5_gn_4_63901 Lactuca sativa HOM05D005493 ORTHO05D007154 4.6e-101 372.1 326 64.7
HanXRQChr16g0515751 Helianthus annuus HOM05D005493 ORTHO05D007154 7.9e-101 371.3 302 67.9
ClCG01G010900 Citrullus lanatus HOM05D005493 ORTHO05D007154 1.0e-100 370.9 327 66.1
Duzib192G0504 Durio zibethinus HOM05D005493 ORTHO05D007154 1.3e-100 370.5 323 63.2
Hma1.2p1_1175F.1_g264030 Hydrangea macrophylla HOM05D005493 ORTHO05D007154 6.7e-100 368.2 296 68.6
MELO3C026067.2 Cucumis melo HOM05D005493 ORTHO05D007154 1.5e-99 367.1 314 66.2
Actinidia39254 Actinidia chinensis HOM05D005493 ORTHO05D007154 2.5e-99 366.3 317 63.7
CsaV3_1G015560 Cucumis sativus L. HOM05D005493 ORTHO05D007154 9.7e-99 364.4 329 63.2
Duzib160G0837 Durio zibethinus HOM05D005493 ORTHO05D007154 9.7e-99 364.4 312 64.7
CAN.G1156.21 Capsicum annuum HOM05D005493 ORTHO05D007154 2.2e-98 363.2 291 66.7
Atru.chr1.2258 Acer truncatum HOM05D005493 ORTHO05D007154 2.8e-98 362.8 327 64.2
Cc09_g00320 Coffea canephora HOM05D005493 ORTHO05D007154 2.4e-97 359.8 319 63.3
Eucgr.E03858 Eucalyptus grandis HOM05D005493 ORTHO05D007154 3.1e-97 359.4 298 66.1
DCAR_006316 Daucus carota HOM05D005493 ORTHO05D007154 9.0e-97 357.8 297 65.7
SalBow8G5358 Salvia bowleyana HOM05D005493 ORTHO05D007154 9.0e-97 357.8 330 60.3
Potri.006G004900 Populus trichocarpa HOM05D005493 ORTHO05D007154 5.0e-95 352.1 317 68.1
Phvul.006G138500 Phaseolus vulgaris HOM05D005493 ORTHO05D007154 1.4e-94 350.5 316 61.7
Gohir.D05G178600 Gossypium hirsutum HOM05D005493 ORTHO05D007154 2.5e-94 349.7 328 61.9
Dinv02850 Davidia involucrata HOM05D005493 ORTHO05D007154 3.2e-94 349.4 269 69.5
Lj1A1246T23 Lonicera japonica HOM05D005493 ORTHO05D007154 4.2e-94 349.0 303 64.7
PGSC0003DMG400013365 Solanum tuberosum HOM05D005493 ORTHO05D007154 4.2e-94 349.0 295 65.1
Gohir.A05G175500 Gossypium hirsutum HOM05D005493 ORTHO05D007154 5.5e-94 348.6 297 65.7
Gorai.009G184000 Gossypium raimondii HOM05D005493 ORTHO05D007154 7.2e-94 348.2 328 61.9
Cpa.g.sc27.228 Carica papaya HOM05D005493 ORTHO05D007154 2.1e-93 346.7 286 67.5
TPR.G17550 Trifolium pratense HOM05D005493 ORTHO05D007154 2.7e-93 346.3 302 64.6
CSS0047473 Camellia sinensis var. sinensis HOM05D005493 ORTHO05D007154 3.6e-93 345.9 319 62.7
VMungo0540G1721 Vigna mungo HOM05D005493 ORTHO05D007154 2.3e-92 343.2 290 63.1
AUR62033011 Chenopodium quinoa HOM05D005493 ORTHO05D007154 3.0e-92 342.8 348 58.6
SGA_v2.0_scaffold7G03695 Striga asiatica HOM05D005493 ORTHO05D007154 3.9e-92 342.4 317 61.5
EL10Ac8g19414 Beta vulgaris HOM05D005493 ORTHO05D007154 6.7e-92 341.7 321 62.3
Glyma.09G014500 Glycine max HOM05D005493 ORTHO05D007154 1.1e-91 340.9 314 60.5
Lj6g0009296 Lotus japonicus HOM05D005493 ORTHO05D007154 1.1e-91 340.9 321 62.6
Potri.016G005500 Populus trichocarpa HOM05D005493 ORTHO05D007154 4.3e-91 339.0 317 62.5
Lalb_Chr18g0057311 Lupinus albus HOM05D005493 ORTHO05D007154 5.7e-91 338.6 301 66.1
THA.LOC104806738 Tarenaya hassleriana HOM05D005493 ORTHO05D007154 7.4e-91 338.2 341 58.4
ECA232G3574 Erigeron canadensis HOM05D005493 ORTHO05D007154 9.7e-91 337.8 299 64.5
Ah.11g043160 Amaranthus hybridus HOM05D005493 ORTHO05D007154 4.8e-90 335.5 317 62.1
COL.COLO4_31918 Corchorus olitorius HOM05D005493 ORTHO05D007154 6.3e-90 335.1 261 71.6
Glyma.15G120100 Glycine max HOM05D005493 ORTHO05D007154 6.3e-90 335.1 317 60.3
Aqoxy1G04259 Aquilegia oxysepala HOM05D005493 ORTHO05D007154 1.8e-89 333.6 311 65.0
CANSAT56G4202 Cannabis sativa HOM05D005493 ORTHO05D007154 2.4e-89 333.2 277 70.0
MSTRG.16053 Avicennia marina HOM05D005493 ORTHO05D007154 3.1e-89 332.8 312 59.0
Aa31sc219G70 Aethionema arabicum HOM05D005493 ORTHO05D007154 4.1e-89 332.4 326 58.9
Ciclev10015889m.g Citrus clementina HOM05D005493 ORTHO05D007154 1.5e-88 330.5 320 62.8
Medtr2g027010 Medicago truncatula HOM05D005493 ORTHO05D007154 1.5e-88 330.5 305 62.0
Hund29945 Selenicereus undatus HOM05D005493 ORTHO05D007154 2.0e-88 330.1 327 59.0
PSO339G5884 Papaver somniferum HOM05D005493 ORTHO05D007154 4.5e-88 328.9 300 61.0
CDE05G0023 Ceratophyllum demersum HOM05D005493 ORTHO05D007154 1.3e-87 327.4 320 59.4
Sp2g12390 Schrenkiella parvula HOM05D005493 ORTHO05D007154 2.9e-87 326.2 318 64.2
FAN28G0158 Fragaria x ananassa HOM05D005493 ORTHO05D007154 3.8e-87 325.9 274 69.7
Rhsim13G0140700 Rhododendron simsii HOM05D005493 ORTHO05D007154 6.5e-87 325.1 328 58.8
Sopen11g007500 Solanum pennellii HOM05D005493 ORTHO05D007154 3.2e-86 322.8 247 66.8
arahy.Tifrunner.gnm1.ann1.N8508C Arachis hypogaea HOM05D005493 ORTHO05D007154 4.2e-86 322.4 299 63.2
Cfa000035 Carpinus fangiana HOM05D005493 ORTHO05D007154 7.2e-86 321.6 220 74.1
Nitab4.5_0001296g0130 Nicotiana tabacum HOM05D005493 ORTHO05D007154 1.2e-85 320.9 258 64.3
Psat1g172480 Pisum sativum HOM05D005493 ORTHO05D007154 2.1e-85 320.1 336 57.4
CARHR173630 Cardamine hirsuta HOM05D005493 ORTHO05D007154 2.7e-85 319.7 317 63.1
C07p31340 Brassica napus HOM05D005493 ORTHO05D007154 1.8e-84 317.0 306 64.7
Haze_07019 Corylus avellana HOM05D005493 ORTHO05D007154 2.3e-84 316.6 218 72.9
Peaxi162Scf00827g00517 Petunia axillaris HOM05D005493 ORTHO05D007154 6.7e-84 315.1 244 65.6
Solyc11g012760.2 Solanum lycopersicum HOM05D005493 ORTHO05D007154 8.8e-84 314.7 255 64.7
A06p44860 Brassica napus HOM05D005493 ORTHO05D007154 1.5e-83 313.9 315 63.2
BraA06t27358Z Brassica rapa HOM05D005493 ORTHO05D007154 4.4e-83 312.4 315 62.9
QL05p067786 Quercus lobata HOM05D005493 ORTHO05D007154 5.7e-83 312.0 335 58.8
Nn1g07522 Nelumbo nucifera HOM05D005493 ORTHO05D007154 1.7e-82 310.5 271 63.5
SGA_v2.0_scaffold186G40127 Striga asiatica HOM05D005493 ORTHO05D007154 1.7e-82 310.5 319 57.4
arahy.Tifrunner.gnm1.ann1.2D6L40 Arachis hypogaea HOM05D005493 ORTHO05D007154 2.2e-82 310.1 303 63.7
BcaB07g30764 Brassica carinata HOM05D005493 ORTHO05D007154 3.7e-82 309.3 309 63.1
Carub.0008s0010 Capsella rubella HOM05D005493 ORTHO05D007154 2.4e-81 306.6 319 62.1
Thhalv10000943m.g Eutrema salsugineum HOM05D005493 ORTHO05D007154 1.2e-80 304.3 317 61.5
RcHm_v2.0_Chr2g0120371 Rosa chinensis HOM05D005493 ORTHO05D007154 2.6e-80 303.1 297 63.6
Zm00001eb253250 Zea mays HOM05D005493 ORTHO05D007154 5.9e-80 302.0 303 56.1
MBI14_g10146_MAGBIO Magnolia biondii HOM05D005493 ORTHO05D007154 1.0e-79 301.2 279 67.7
Prupe.4G003700 Prunus persica HOM05D005493 ORTHO05D007154 1.3e-79 300.8 323 60.7
MSTRG.7128 Avicennia marina HOM05D005493 ORTHO05D007154 2.2e-79 300.1 311 61.1
A09p23180 Brassica napus HOM05D005493 ORTHO05D007154 2.2e-79 300.1 309 61.8
BraA09t37921Z Brassica rapa HOM05D005493 ORTHO05D007154 2.2e-79 300.1 309 61.8
Dinv15338 Davidia involucrata HOM05D005493 ORTHO05D007154 2.9e-79 299.7 268 65.7
MD10G1339200 Malus domestica HOM05D005493 ORTHO05D007154 2.9e-79 299.7 321 57.6
Oeu025962.1 Olea europaea HOM05D005493 ORTHO05D007154 1.4e-78 297.4 313 60.1
FvH4_1g24140 Fragaria vesca HOM05D005493 ORTHO05D007154 2.5e-78 296.6 317 60.9
FAN19G1729 Fragaria x ananassa HOM05D005493 ORTHO05D007154 2.5e-78 296.6 317 60.9
C09p29920 Brassica napus HOM05D005493 ORTHO05D007154 4.2e-78 295.8 309 61.8
FAN23G1811 Fragaria x ananassa HOM05D005493 ORTHO05D007154 4.2e-78 295.8 304 61.5
BcaC04g21607 Brassica carinata HOM05D005493 ORTHO05D007154 9.4e-78 294.7 309 61.5
BolC9t55855H Brassica oleracea HOM05D005493 ORTHO05D007154 1.2e-77 294.3 305 62.3
vmacro03608 Vaccinium macrocarpon HOM05D005493 ORTHO05D007154 1.6e-77 293.9 368 49.2
CDE05G0194 Ceratophyllum demersum HOM05D005493 ORTHO05D007154 2.7e-77 293.1 292 57.5
Sabra06G0004100 Salix brachista HOM05D005493 ORTHO05D007154 3.6e-77 292.7 246 64.2
Sc17g0007990 Simmondsia chinensis HOM05D005493 ORTHO05D007154 8.0e-77 291.6 238 69.3
Rhsim13G0140600 Rhododendron simsii HOM05D005493 ORTHO05D007154 1.5e-75 287.3 306 55.9
AL8G10270 Arabidopsis lyrata HOM05D005493 ORTHO05D007154 5.7e-75 285.4 310 59.7
Migut.M01444 Erythranthe guttata HOM05D005493 ORTHO05D007154 7.4e-75 285.0 345 52.8
ATR0751G138 Amborella trichopoda HOM05D005493 ORTHO05D007154 1.7e-74 283.9 303 56.1
BcaC06g31350 Brassica carinata HOM05D005493 ORTHO05D007154 2.0e-72 276.9 306 58.8
BcaC06g34232 Brassica carinata HOM05D005493 ORTHO05D007154 1.5e-70 270.8 306 57.2
AT5G47680 Arabidopsis thaliana HOM05D005493 ORTHO05D007154 1.2e-69 267.7 341 56.6
Ca_00763_v3 Cicer arietinum L. HOM05D005493 ORTHO05D007154 2.0e-67 260.4 258 58.1
SEGI_02626 Sequoiadendron giganteum HOM05D005493 ORTHO05D007154 3.1e-65 253.1 290 52.8
HPP92_027483 Vanilla planifolia HOM05D005493 ORTHO05D007154 1.2e-64 251.1 232 56.5
BolC7t43675H Brassica oleracea HOM05D005493 ORTHO05D007154 3.5e-64 249.6 306 56.5
AUR62034063 Chenopodium quinoa HOM05D005493 ORTHO05D007154 1.0e-63 248.1 195 65.6
Pp3c1_33120 Physcomitrium patens HOM05D005493 ORTHO05D007154 1.4e-60 237.7 304 47.0
Pp3c2_12110 Physcomitrium patens HOM05D005493 ORTHO05D007154 2.9e-55 219.9 304 44.4
GSVIVG01002894001 Vitis vinifera HOM05D005493 ORTHO05D007154 8.6e-55 218.4 138 81.9
CBR_g3993 Chara braunii HOM05D005493 ORTHO05D007154 1.9e-54 217.2 251 46.2
Mapoly0011s0174 Marchantia polymorpha HOM05D005493 ORTHO05D007154 1.9e-54 217.2 289 49.5
SMO358G0363 Selaginella moellendorffii HOM05D005493 ORTHO05D007154 4.5e-48 196.1 266 45.1
Sabra16G0010400 Salix brachista HOM05D005493 ORTHO05D007154 3.6e-45 186.4 332 44.6
Os02g0725600 Oryza sativa ssp. japonica HOM05D005493 ORTHO05D007154 7.5e-43 178.7 123 76.4
SHI12358 Sapria himalayana HOM05D005493 ORTHO05D007154 7.0e-41 172.2 121 67.8
Actinidia11906 Actinidia chinensis HOM05D005493 ORTHO05D007154 9.2e-41 171.8 174 55.7
AagrBONN_evm.TU.Sc2ySwM_362.2751 Anthoceros agrestis HOM05D005493 ORTHO05D007154 6.2e-37 159.1 253 39.9
MCO13G503 Micromonas commoda HOM05D005493 ORTHO05D007154 9.8e-35 151.8 177 43.5
Cre06.g278500 Chlamydomonas reinhardtii HOM05D005493 ORTHO05D007154 8.3e-34 148.7 291 36.8
Zm00001eb070580 Zea mays HOM05D005493 ORTHO05D007154 3.2e-33 146.7 106 74.5
Zm00001eb264500 Zea mays HOM05D005493 ORTHO05D007154 3.2e-33 146.7 108 73.1
CBR_g1099 Chara braunii HOM05D000019 ORTHO05D000002 1.1e-25 121.7 207 32.9
unitig_37.g12178 Utricularia gibba HOM05D005493 ORTHO05D007154 8.6e-23 112.1 159 51.6
PRCOL_00000725 Prasinoderma coloniale HOM05D005493 ORTHO05D007154 3.3e-22 110.2 196 32.7
Zm00001eb168490 Zea mays HOM05D000087 ORTHO05D011931 8.1e-21 105.5 81 70.4
SHI50428 Sapria himalayana HOM05D005493 ORTHO05D007154 6.4e-18 95.9 140 45.0
Cfa025804 Carpinus fangiana HOM05D005493 ORTHO05D007154 1.3e-15 88.2 375 27.5
Cre02.g119350 Chlamydomonas reinhardtii HOM05D005493 ORTHO05D007154 1.5e-14 84.7 183 30.1
Cre10.g456851 Chlamydomonas reinhardtii HOM05D005493 ORTHO05D007154 5.3e-12 76.3 209 26.8
vmacro23227 Vaccinium macrocarpon HOM05D005493 ORTHO05D007154 2.2e-10 70.9 64 60.9
unitig_37.g12179 Utricularia gibba HOM05D005493 ORTHO05D007154 1.4e-09 68.2 81 50.6


User provided reference genes

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