Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR042G0303 Punica granatum HOM05D004189 ORTHO05D004092 0.0e+00 1099.0 645 100.0
Eucgr.A02790 Eucalyptus grandis HOM05D004189 ORTHO05D004092 3.1e-74 283.9 717 37.0
Potri.012G141300 Populus trichocarpa HOM05D004189 ORTHO05D004092 3.5e-65 253.8 683 35.1
Gohir.D12G259100 Gossypium hirsutum HOM05D004189 ORTHO05D004092 2.5e-63 247.7 699 36.5
Gohir.A12G257800 Gossypium hirsutum HOM05D004189 ORTHO05D004092 1.2e-62 245.4 704 36.8
Gorai.008G277500 Gossypium raimondii HOM05D004189 ORTHO05D004092 5.7e-60 236.5 700 36.6
arahy.Tifrunner.gnm1.ann1.E2ZRS1 Arachis hypogaea HOM05D004189 ORTHO05D004092 4.0e-53 213.8 686 33.4
Sabra15G0153700 Salix brachista HOM05D004189 ORTHO05D004092 1.7e-51 208.4 679 32.8
arahy.Tifrunner.gnm1.ann1.EQ3RBX Arachis hypogaea HOM05D004189 ORTHO05D004092 2.8e-51 207.6 589 34.1
Oeu024223.1 Olea europaea HOM05D004189 ORTHO05D004092 1.4e-50 205.3 699 32.5
Thecc.03G176700 Theobroma cacao HOM05D004189 ORTHO05D004092 3.5e-49 200.7 705 31.8
FAN01G1221 Fragaria x ananassa HOM05D013146 ORTHO05D004092 4.5e-49 200.3 717 30.7
Cc03_g07610 Coffea canephora HOM05D004189 ORTHO05D004092 5.0e-48 196.8 678 33.3
Duzib205G0656 Durio zibethinus HOM05D004189 ORTHO05D004092 1.2e-46 192.2 705 30.2
QL09p014192 Quercus lobata HOM05D004189 ORTHO05D004092 1.6e-46 191.8 719 32.1
Ciclev10004574m.g Citrus clementina HOM05D004189 ORTHO05D004092 1.7e-43 181.8 724 31.9
Sc19g0001510 Simmondsia chinensis HOM05D004189 ORTHO05D004092 2.2e-43 181.4 739 30.9
Dinv28441 Davidia involucrata HOM05D004189 ORTHO05D004092 3.2e-42 177.6 751 30.0
TWI23G0464 Tripterygium wilfordii HOM05D004189 ORTHO05D004092 4.1e-42 177.2 652 30.8
TAR374G0772 Trochodendron aralioides HOM05D004189 ORTHO05D004092 7.0e-42 176.4 667 33.0
FAN03G0039 Fragaria x ananassa HOM05D013146 ORTHO05D004092 2.0e-41 174.9 829 29.3
Lalb_Chr19g0130831 Lupinus albus HOM05D004189 ORTHO05D004092 2.0e-41 174.9 907 28.0
Cpa.g.sc107.53 Carica papaya HOM05D004189 ORTHO05D004092 3.5e-41 174.1 662 33.1
RcHm_v2.0_Chr1g0377291 Rosa chinensis HOM05D013146 ORTHO05D004092 1.3e-40 172.2 853 28.7
FAN03G0716 Fragaria x ananassa HOM05D013146 ORTHO05D004092 1.9e-39 168.3 826 28.5
Actinidia34113 Actinidia chinensis HOM05D004189 ORTHO05D004092 3.3e-39 167.5 659 30.3
MD01G1201000 Malus domestica HOM05D004189 ORTHO05D004092 7.3e-39 166.4 670 31.6
CANSAT21G0725 Cannabis sativa HOM05D004189 ORTHO05D004092 3.6e-38 164.1 499 32.9
CANSAT21G0752 Cannabis sativa HOM05D004189 ORTHO05D004092 2.3e-37 161.4 499 32.7
EL10Ac3g05642 Beta vulgaris HOM05D004189 ORTHO05D004092 6.8e-37 159.8 445 31.9
Nn6g33499 Nelumbo nucifera HOM05D004189 ORTHO05D004092 5.8e-36 156.8 663 31.7
RcHm_v2.0_Chr1g0377331 Rosa chinensis HOM05D013146 ORTHO05D004092 7.5e-36 156.4 765 29.8
vmacro06681 Vaccinium macrocarpon HOM05D004189 ORTHO05D004092 2.2e-35 154.8 665 31.4
Nitab4.5_0000716g0020 Nicotiana tabacum HOM05D004189 ORTHO05D004092 2.9e-35 154.5 513 31.4
QL09p014207 Quercus lobata HOM05D004189 ORTHO05D004092 4.9e-35 153.7 712 30.8
Nitab4.5_0009681g0010 Nicotiana tabacum HOM05D004189 ORTHO05D004092 4.1e-34 150.6 463 34.3
COL.COLO4_14310 Corchorus olitorius HOM05D004189 ORTHO05D004092 1.6e-33 148.7 521 29.8
Aqoxy7G00356 Aquilegia oxysepala HOM05D004189 ORTHO05D004092 2.1e-33 148.3 762 29.0
FAN10G2986 Fragaria x ananassa HOM05D013146 ORTHO05D004092 3.5e-33 147.5 806 28.3
Glyma.16G189900 Glycine max HOM05D004189 ORTHO05D004092 4.6e-33 147.1 855 26.4
FAN06G2021 Fragaria x ananassa HOM05D013146 ORTHO05D004092 6.0e-33 146.7 668 28.7
FAN06G1386 Fragaria x ananassa HOM05D013146 ORTHO05D004092 7.8e-33 146.4 668 28.6
Peaxi162Scf00444g00847 Petunia axillaris HOM05D004189 ORTHO05D004092 7.8e-33 146.4 707 29.1
Manes.06G147200 Manihot esculenta HOM05D004189 ORTHO05D004092 1.3e-32 145.6 674 29.4
CAN.G490.32 Capsicum annuum HOM05D004189 ORTHO05D004092 2.3e-32 144.8 444 34.0
Glyma.20G158500 Glycine max HOM05D004189 ORTHO05D004092 2.3e-32 144.8 649 30.4
MD07G1268800 Malus domestica HOM05D004189 ORTHO05D004092 3.0e-32 144.4 474 31.4
AT5G52300 Arabidopsis thaliana HOM05D004189 ORTHO05D004092 3.9e-32 144.1 691 28.9
AT4G25580 Arabidopsis thaliana HOM05D004189 ORTHO05D004092 6.6e-32 143.3 644 29.5
Phvul.004G117100 Phaseolus vulgaris HOM05D004189 ORTHO05D004092 1.5e-31 142.1 309 36.9
AUR62021191 Chenopodium quinoa HOM05D004189 ORTHO05D004092 1.9e-31 141.7 456 31.1
AUR62015982 Chenopodium quinoa HOM05D004189 ORTHO05D004092 5.6e-31 140.2 474 30.4
THA.LOC104811978 Tarenaya hassleriana HOM05D004189 ORTHO05D004092 7.3e-31 139.8 631 30.9
Lj2g0010006 Lotus japonicus HOM05D004189 ORTHO05D004092 9.5e-31 139.4 928 26.1
Medtr1g100627 Medicago truncatula HOM05D004189 ORTHO05D004092 1.8e-29 135.2 631 30.7
PSO478G0985 Papaver somniferum HOM05D004189 ORTHO05D004092 4.0e-29 134.0 722 30.9
CARHR265280 Cardamine hirsuta HOM05D004189 ORTHO05D004092 6.8e-29 133.3 701 29.5
PGSC0003DMG400014293 Solanum tuberosum HOM05D004189 ORTHO05D004092 6.8e-29 133.3 448 32.6
Lsat_1_v5_gn_2_132020 Lactuca sativa HOM05D004189 ORTHO05D004092 2.2e-27 128.3 667 28.9
Hund11746 Selenicereus undatus HOM05D004189 ORTHO05D004092 2.9e-27 127.9 709 28.3
Carub.0008s1240 Capsella rubella HOM05D004189 ORTHO05D004092 4.9e-27 127.1 719 27.3
Glyma.10G236000 Glycine max HOM05D004189 ORTHO05D004092 4.9e-27 127.1 649 29.1
ECA238G1803 Erigeron canadensis HOM05D004189 ORTHO05D004092 6.4e-27 126.7 696 27.6
Sp7g23610 Schrenkiella parvula HOM05D004189 ORTHO05D004092 1.9e-26 125.2 657 28.6
Carub.0007s1540 Capsella rubella HOM05D004189 ORTHO05D004092 2.4e-26 124.8 644 27.3
Thhalv10013021m.g Eutrema salsugineum HOM05D004189 ORTHO05D004092 2.4e-26 124.8 670 29.4
AL8G26690 Arabidopsis lyrata HOM05D004189 ORTHO05D004092 9.2e-26 122.9 640 29.1
Cfa008320 Carpinus fangiana HOM05D004189 ORTHO05D004092 9.2e-26 122.9 673 26.9
TPR.G14322 Trifolium pratense HOM05D004189 ORTHO05D004092 9.2e-26 122.9 682 26.8
Sopen03g004620 Solanum pennellii HOM05D004189 ORTHO05D004092 1.2e-25 122.5 474 30.0
MBI18_g30543_MAGBIO Magnolia biondii HOM05D004189 ORTHO05D004092 1.6e-25 122.1 647 27.2
A02p11900 Brassica napus HOM05D004189 ORTHO05D004092 4.6e-25 120.6 689 27.6
CARHR233000 Cardamine hirsuta HOM05D004189 ORTHO05D004092 4.6e-25 120.6 663 27.6
Lj5g0019959 Lotus japonicus HOM05D004189 ORTHO05D004092 4.6e-25 120.6 766 24.9
BcaC03g14545 Brassica carinata HOM05D004189 ORTHO05D004092 6.0e-25 120.2 681 29.8
C02p19900 Brassica napus HOM05D004189 ORTHO05D004092 7.8e-25 119.8 681 29.8
BolC2t08123H Brassica oleracea HOM05D004189 ORTHO05D004092 7.8e-25 119.8 681 29.8
Migut.F00339 Erythranthe guttata HOM05D004189 ORTHO05D004092 7.8e-25 119.8 663 29.9
HanXRQChr07g0207021 Helianthus annuus HOM05D004189 ORTHO05D004092 7.8e-25 119.8 674 29.7
VMungo0720G0841 Vigna mungo HOM05D004189 ORTHO05D004092 1.0e-24 119.4 645 28.8
Potri.015G143950 Populus trichocarpa HOM05D004189 ORTHO05D004092 2.3e-24 118.2 677 28.2
CSS0002108 Camellia sinensis var. sinensis HOM05D004189 ORTHO05D004092 3.9e-24 117.5 556 27.3
Rhsim03G0180900 Rhododendron simsii HOM05D004189 ORTHO05D004092 8.6e-24 116.3 638 28.4
Ca_25745_v3 Cicer arietinum L. HOM05D004189 ORTHO05D004092 1.1e-23 115.9 349 35.0
BraA03t14684Z Brassica rapa HOM05D004189 ORTHO05D004092 7.3e-23 113.2 658 28.4
Migut.F01119 Erythranthe guttata HOM05D004189 ORTHO05D004092 9.5e-23 112.8 609 27.3
A03p56110 Brassica napus HOM05D004189 ORTHO05D004092 1.6e-22 112.1 658 28.4
CiPaw.03G106300 Carya illinoinensis HOM05D004189 ORTHO05D004092 1.6e-22 112.1 837 24.3
AL7G27520 Arabidopsis lyrata HOM05D004189 ORTHO05D004092 2.8e-22 111.3 641 27.8
CSS0007027 Camellia sinensis var. sinensis HOM05D004189 ORTHO05D004092 2.8e-22 111.3 555 27.9
DCAR_018199 Daucus carota HOM05D004189 ORTHO05D004092 4.7e-22 110.5 743 33.4
arahy.Tifrunner.gnm1.ann1.06RI6S Arachis hypogaea HOM05D004189 ORTHO05D004092 1.1e-21 109.4 759 24.4
arahy.Tifrunner.gnm1.ann1.4R9DEN Arachis hypogaea HOM05D001888 ORTHO05D001842 4.0e-21 107.5 705 25.8
MELO3C003321.2 Cucumis melo HOM05D004189 ORTHO05D004092 4.0e-21 107.5 651 27.6
Thhalv10024860m.g Eutrema salsugineum HOM05D004189 ORTHO05D004092 4.0e-21 107.5 644 26.4
Ah.07g207200 Amaranthus hybridus HOM05D032681 ORTHO05D004092 6.8e-21 106.7 383 30.0
Glyma.16G193200 Glycine max HOM05D004189 ORTHO05D004092 1.2e-20 105.9 284 34.2
PSO782G0005 Papaver somniferum HOM05D004189 ORTHO05D004092 3.4e-20 104.4 701 29.1
FvH4_7g29491 Fragaria vesca HOM05D013146 ORTHO05D004092 5.8e-20 103.6 336 32.1
Prupe.2G294400 Prunus persica HOM05D004189 ORTHO05D004092 5.8e-20 103.6 273 44.0
Phvul.007G069800 Phaseolus vulgaris HOM05D004189 ORTHO05D004092 9.9e-20 102.8 625 29.9
BolC7t45929H Brassica oleracea HOM05D004189 ORTHO05D004092 1.3e-19 102.4 650 28.6
C07p54440 Brassica napus HOM05D004189 ORTHO05D004092 2.2e-19 101.7 676 27.1
FAN10G2376 Fragaria x ananassa HOM05D013146 ORTHO05D004092 4.9e-19 100.5 772 26.8
Glyma.09G139600 Glycine max HOM05D004189 ORTHO05D004092 6.4e-19 100.1 1005 25.8
Medtr6g045273 Medicago truncatula HOM05D004189 ORTHO05D004092 1.1e-18 99.4 365 32.1
BcaB05g21946 Brassica carinata HOM05D004189 ORTHO05D004092 1.4e-18 99.0 670 27.3
ATR0680G076 Amborella trichopoda HOM05D004189 ORTHO05D004092 9.2e-18 96.3 629 25.0
Solyc03g025810.4 Solanum lycopersicum HOM05D004189 ORTHO05D004092 1.2e-17 95.9 686 28.1
BcaC06g32799 Brassica carinata HOM05D004189 ORTHO05D004092 6.0e-17 93.6 650 27.8
TPR.G10748 Trifolium pratense HOM05D004189 ORTHO05D004092 6.0e-17 93.6 244 38.5
BcaB01g04200 Brassica carinata HOM05D004189 ORTHO05D004092 3.9e-16 90.9 700 28.3
Sp6g14560 Schrenkiella parvula HOM05D004189 ORTHO05D004092 1.1e-15 89.4 658 25.1
C03p18370 Brassica napus HOM05D004189 ORTHO05D004092 1.5e-15 89.0 687 26.3
ClCG09G012920 Citrullus lanatus HOM05D004189 ORTHO05D004092 1.5e-15 89.0 664 26.1
THA.LOC104800253 Tarenaya hassleriana HOM05D004189 ORTHO05D004092 7.3e-15 86.7 595 27.2
BolC3t14234H Brassica oleracea HOM05D004189 ORTHO05D004092 1.6e-14 85.5 685 26.7
Ca_10770_v3 Cicer arietinum L. HOM05D004189 ORTHO05D004092 6.2e-14 83.6 648 26.7
Glyma.16G192000 Glycine max HOM05D004189 ORTHO05D004092 6.2e-14 83.6 162 42.6
Oeu056256.2 Olea europaea HOM05D004189 ORTHO05D004092 6.2e-14 83.6 205 33.7
Glyma.16G183700 Glycine max HOM05D004189 ORTHO05D004092 1.4e-13 82.4 170 41.2
Lsat_1_v5_gn_8_8621 Lactuca sativa HOM05D004189 ORTHO05D004092 1.4e-13 82.4 603 25.0
Glyma.16G192200 Glycine max HOM05D004189 ORTHO05D004092 3.1e-13 81.3 162 42.0
Psat6g199400 Pisum sativum HOM05D004189 ORTHO05D004092 3.1e-13 81.3 478 24.1
Glyma.16G192732 Glycine max HOM05D004189 ORTHO05D004092 4.0e-13 80.9 170 40.6
Medtr1g100623 Medicago truncatula HOM05D004189 ORTHO05D004092 4.0e-13 80.9 118 44.1
SalBow4G1950 Salvia bowleyana HOM05D026728 ORTHO05D004092 4.0e-13 80.9 331 31.4
SalBow4G1418 Salvia bowleyana HOM05D026728 ORTHO05D004092 5.3e-13 80.5 320 30.0
SGA_v2.0_scaffold10G05341 Striga asiatica HOM05D026728 ORTHO05D004092 9.0e-13 79.7 297 34.7
BraA03t10863Z Brassica rapa HOM05D004189 ORTHO05D004092 1.2e-12 79.3 690 26.8
Nn1g01463 Nelumbo nucifera HOM05D004189 ORTHO05D004092 1.2e-12 79.3 501 26.7
Psat0s2227g0040 Pisum sativum HOM05D004189 ORTHO05D004092 1.2e-12 79.3 269 37.5
BcaC01g06182 Brassica carinata HOM05D004189 ORTHO05D004092 1.5e-12 79.0 690 27.0
A03p15730 Brassica napus HOM05D004189 ORTHO05D004092 1.5e-12 79.0 677 27.0
Lalb_Chr21g0305031 Lupinus albus HOM05D004189 ORTHO05D004092 3.4e-12 77.8 119 47.1
CDE08G1026 Ceratophyllum demersum HOM05D004189 ORTHO05D004092 5.8e-12 77.0 360 26.4
GSVIVG01028976001 Vitis vinifera HOM05D004189 ORTHO05D004092 5.8e-12 77.0 259 29.3
Nitab4.5_0003242g0020 Nicotiana tabacum HOM05D004189 ORTHO05D004092 9.9e-12 76.3 135 41.5
TPR.G10757 Trifolium pratense HOM05D004189 ORTHO05D004092 2.2e-11 75.1 225 32.4
Aa31LG7G12260 Aethionema arabicum HOM05D004189 ORTHO05D004092 2.4e-10 71.6 623 26.2
BraA02t06255Z Brassica rapa HOM05D004189 ORTHO05D004092 1.2e-09 69.3 697 25.1
MBI17_g21975_MAGBIO Magnolia biondii HOM05D004189 ORTHO05D004092 1.6e-09 68.9 97 45.4
Haze_13708 Corylus avellana HOM05D004189 ORTHO05D004092 2.7e-09 68.2 236 37.3
Sp6g14580 Schrenkiella parvula HOM05D004189 ORTHO05D004092 7.8e-09 66.6 246 27.2
CsaV3_3G049950 Cucumis sativus L. HOM05D004189 ORTHO05D004092 1.7e-08 65.5 278 29.1
Peaxi162Scf00234g00811 Petunia axillaris HOM05D004189 ORTHO05D004092 2.3e-08 65.1 136 41.9
Nitab4.5_0002721g0060 Nicotiana tabacum HOM05D004189 ORTHO05D004092 3.9e-08 64.3 119 39.5
SGA_v2.0_scaffold60G21043 Striga asiatica HOM05D004189 ORTHO05D004092 3.9e-08 64.3 91 40.7
unitig_46.g18790 Utricularia gibba HOM05D004189 ORTHO05D004092 6.6e-08 63.5 82 51.2
Sed0019460 Sechium edule HOM05D004189 ORTHO05D004092 1.5e-07 62.4 134 40.3
ECA233G5127 Erigeron canadensis HOM05D004189 ORTHO05D004092 3.3e-07 61.2 396 24.0
Lj8A24G36 Lonicera japonica HOM05D004189 ORTHO05D004092 5.6e-07 60.5 711 25.6
Aa31LG3G8720 Aethionema arabicum HOM05D004189 ORTHO05D004092 7.3e-07 60.1 687 24.5
ECA238G1893 Erigeron canadensis HOM05D004189 ORTHO05D004092 9.6e-07 59.7 390 26.7
Thhalv10015427m.g Eutrema salsugineum HOM05D004189 ORTHO05D004092 9.6e-07 59.7 233 27.9
Aqoxy1G00878 Aquilegia oxysepala HOM05D006297 ORTHO05D007873 2.8e-06 58.2 90 41.1
SalBow2G2574 Salvia bowleyana HOM05D004189 ORTHO05D004092 2.8e-06 58.2 110 40.9
Sopen01g005170 Solanum pennellii HOM05D000155 ORTHO05D000022 2.8e-06 58.2 126 34.1
AL8G26710 Arabidopsis lyrata HOM05D004189 ORTHO05D004092 4.8e-06 57.4 249 26.9
CAN.G166.11 Capsicum annuum HOM05D004189 ORTHO05D004092 4.8e-06 57.4 102 39.2


User provided reference genes

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