Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR031G3931 Punica granatum HOM05D004730 ORTHO05D005705 1.3e-304 1048.9 517 100.0
Eucgr.D02369 Eucalyptus grandis HOM05D004730 ORTHO05D005705 2.3e-253 878.6 510 84.5
Ciclev10019746m.g Citrus clementina HOM05D004730 ORTHO05D005705 3.6e-246 854.7 515 82.1
Thecc.01G343400 Theobroma cacao HOM05D004730 ORTHO05D005705 2.4e-242 842.0 514 81.3
PGR031G3051 Punica granatum HOM05D004730 ORTHO05D005705 1.2e-241 839.7 536 81.5
Prupe.2G187200 Prunus persica HOM05D004730 ORTHO05D005705 4.5e-241 837.8 509 82.1
FAN10G2003 Fragaria x ananassa HOM05D004730 ORTHO05D005705 1.0e-240 836.6 509 81.1
Medtr3g018770 Medicago truncatula HOM05D004730 ORTHO05D005705 1.3e-240 836.3 516 80.4
FAN03G1043 Fragaria x ananassa HOM05D004730 ORTHO05D005705 1.7e-240 835.9 509 81.3
Gorai.004G152100 Gossypium raimondii HOM05D004730 ORTHO05D005705 1.7e-240 835.9 523 80.3
FvH4_7g16330 Fragaria vesca HOM05D004730 ORTHO05D005705 1.1e-239 833.2 509 81.3
Nn1g01877 Nelumbo nucifera HOM05D004730 ORTHO05D005705 1.1e-239 833.2 514 80.0
FAN06G3857 Fragaria x ananassa HOM05D004730 ORTHO05D005705 3.2e-239 831.6 509 81.1
Gohir.D08G146500 Gossypium hirsutum HOM05D004730 ORTHO05D005705 4.2e-239 831.2 523 79.9
FAN06G4548 Fragaria x ananassa HOM05D004730 ORTHO05D005705 5.5e-239 830.9 509 81.1
RcHm_v2.0_Chr1g0359341 Rosa chinensis HOM05D004730 ORTHO05D005705 7.2e-239 830.5 509 80.9
Gohir.A08G125600 Gossypium hirsutum HOM05D004730 ORTHO05D005705 1.0e-237 826.6 523 79.5
Potri.002G170100 Populus trichocarpa HOM05D004730 ORTHO05D005705 1.8e-237 825.9 507 80.7
TPR.G9866 Trifolium pratense HOM05D004730 ORTHO05D005705 3.9e-237 824.7 519 79.0
GSVIVG01027092001 Vitis vinifera HOM05D004730 ORTHO05D005705 5.2e-237 824.3 516 80.6
Atru.chr5.659 Acer truncatum HOM05D004730 ORTHO05D005705 1.1e-236 823.2 516 81.2
vmacro13156 Vaccinium macrocarpon HOM05D004730 ORTHO05D005705 2.6e-236 822.0 515 80.4
Rhsim07G0004700 Rhododendron simsii HOM05D004730 ORTHO05D005705 3.3e-236 821.6 527 79.1
Lalb_Chr21g0314351 Lupinus albus HOM05D004730 ORTHO05D005705 4.4e-236 821.2 508 81.5
Lj3g0019549 Lotus japonicus HOM05D004730 ORTHO05D005705 6.3e-235 817.4 507 79.5
Duzib138G0598 Durio zibethinus HOM05D004730 ORTHO05D005705 3.1e-234 815.1 511 79.6
MD07G1148700 Malus domestica HOM05D004730 ORTHO05D005705 5.3e-234 814.3 510 79.8
Cfa003807 Carpinus fangiana HOM05D004730 ORTHO05D005705 1.6e-233 812.8 501 80.6
Glyma.11G153900 Glycine max HOM05D004730 ORTHO05D005705 1.6e-233 812.8 515 78.6
Glyma.04G141000 Glycine max HOM05D004730 ORTHO05D005705 4.5e-233 811.2 515 78.6
Nitab4.5_0000258g0150 Nicotiana tabacum HOM05D004730 ORTHO05D005705 5.9e-233 810.8 514 79.2
Actinidia10133 Actinidia chinensis HOM05D004730 ORTHO05D005705 1.0e-232 810.1 494 82.6
CAN.G239.1 Capsicum annuum HOM05D004730 ORTHO05D005705 1.5e-231 806.2 522 78.2
MELO3C022308.2 Cucumis melo HOM05D004730 ORTHO05D005705 1.5e-231 806.2 507 79.3
DCAR_005384 Daucus carota HOM05D004730 ORTHO05D005705 1.6e-230 802.7 511 78.5
PGSC0003DMG400017986 Solanum tuberosum HOM05D004730 ORTHO05D005705 2.1e-230 802.4 515 77.7
THA.LOC104817359 Tarenaya hassleriana HOM05D004730 ORTHO05D005705 6.1e-230 800.8 517 77.2
Thhalv10005894m.g Eutrema salsugineum HOM05D004730 ORTHO05D005705 8.0e-230 800.4 506 78.1
CsaV3_6G008300 Cucumis sativus L. HOM05D004730 ORTHO05D005705 1.4e-229 799.7 503 78.9
VMungo1080G1812 Vigna mungo HOM05D004730 ORTHO05D005705 5.2e-229 797.7 492 79.9
Sopen05g028800 Solanum pennellii HOM05D004730 ORTHO05D005705 6.7e-229 797.3 516 77.5
Sp5g01680 Schrenkiella parvula HOM05D004730 ORTHO05D005705 1.5e-228 796.2 506 78.1
Cc02_g39260 Coffea canephora HOM05D004730 ORTHO05D005705 2.0e-228 795.8 513 78.8
Solyc05g050390.4 Solanum lycopersicum HOM05D004730 ORTHO05D005705 7.5e-228 793.9 516 77.3
SGA_v2.0_scaffold5G03013 Striga asiatica HOM05D004730 ORTHO05D005705 2.2e-227 792.3 500 79.8
arahy.Tifrunner.gnm1.ann1.DU0G1C Arachis hypogaea HOM05D004730 ORTHO05D005705 1.4e-226 789.6 533 75.2
Peaxi162Scf00403g00522 Petunia axillaris HOM05D004730 ORTHO05D005705 1.4e-226 789.6 521 76.0
CANSAT56G1965 Cannabis sativa HOM05D004730 ORTHO05D005705 3.1e-226 788.5 503 77.3
Lsat_1_v5_gn_3_139961 Lactuca sativa HOM05D004730 ORTHO05D005705 2.7e-225 785.4 518 77.6
Phvul.005G029900 Phaseolus vulgaris HOM05D004730 ORTHO05D005705 7.7e-225 783.9 492 78.5
Aqoxy2G00449 Aquilegia oxysepala HOM05D004730 ORTHO05D005705 1.0e-224 783.5 504 77.6
MD01G1079900 Malus domestica HOM05D004730 ORTHO05D005705 1.3e-224 783.1 509 77.0
PSO339G2575 Papaver somniferum HOM05D004730 ORTHO05D005705 5.0e-224 781.2 516 76.4
MBI06_g08459_MAGBIO Magnolia biondii HOM05D004730 ORTHO05D005705 6.5e-224 780.8 499 77.6
Carub.0005s2846 Capsella rubella HOM05D004730 ORTHO05D005705 1.1e-223 780.0 506 76.7
FAN10G3709 Fragaria x ananassa HOM05D004730 ORTHO05D005705 1.1e-223 780.0 509 76.8
SalBow3G2618 Salvia bowleyana HOM05D004730 ORTHO05D005705 2.5e-223 778.9 517 75.8
CSS0011474 Camellia sinensis var. sinensis HOM05D004730 ORTHO05D005705 7.2e-223 777.3 511 76.3
Carub.0003s3432 Capsella rubella HOM05D004730 ORTHO05D005705 7.2e-223 777.3 517 75.2
Nitab4.5_0004506g0070 Nicotiana tabacum HOM05D004730 ORTHO05D005705 9.4e-223 776.9 514 76.8
Haze_15648 Corylus avellana HOM05D004730 ORTHO05D005705 1.2e-222 776.5 523 75.9
Sed0022953 Sechium edule HOM05D004730 ORTHO05D005705 1.6e-222 776.2 506 77.5
CARHR172020 Cardamine hirsuta HOM05D004730 ORTHO05D005705 2.1e-222 775.8 508 76.2
AL5G44220 Arabidopsis lyrata HOM05D004730 ORTHO05D005705 1.4e-221 773.1 506 76.7
Hund16708 Selenicereus undatus HOM05D004730 ORTHO05D005705 1.8e-221 772.7 518 74.1
Aa31LG10G15710 Aethionema arabicum HOM05D004730 ORTHO05D005705 3.0e-221 771.9 510 76.1
COL.COLO4_06293 Corchorus olitorius HOM05D004730 ORTHO05D005705 8.8e-221 770.4 460 83.9
MSTRG.17337 Avicennia marina HOM05D004730 ORTHO05D005705 7.5e-220 767.3 500 77.6
C06p27700 Brassica napus HOM05D004730 ORTHO05D005705 7.5e-220 767.3 511 76.9
C06p27860 Brassica napus HOM05D004730 ORTHO05D005705 7.5e-220 767.3 511 76.9
AUR62023469 Chenopodium quinoa HOM05D004730 ORTHO05D005705 2.8e-219 765.4 517 74.7
Migut.B01859 Erythranthe guttata HOM05D004730 ORTHO05D005705 8.3e-219 763.8 516 76.0
Sabra02G0142200 Salix brachista HOM05D004730 ORTHO05D005705 1.4e-218 763.1 551 71.1
PSO210G5634 Papaver somniferum HOM05D004730 ORTHO05D005705 4.1e-218 761.5 516 74.2
ECA248G0182 Erigeron canadensis HOM05D004730 ORTHO05D005705 1.2e-217 760.0 514 76.5
BolC6t37941H Brassica oleracea HOM05D004730 ORTHO05D005705 3.5e-217 758.4 532 73.3
CiPaw.01G075800 Carya illinoinensis HOM05D004730 ORTHO05D005705 7.7e-217 757.3 457 82.9
Ah.05g179630 Amaranthus hybridus HOM05D004730 ORTHO05D005705 5.0e-216 754.6 515 74.6
EL10Ac1g00278 Beta vulgaris HOM05D004730 ORTHO05D005705 1.1e-215 753.4 514 74.1
Oeu015369.3 Olea europaea HOM05D004730 ORTHO05D005705 5.5e-215 751.1 547 71.5
Lj7C501G3 Lonicera japonica HOM05D004730 ORTHO05D005705 3.6e-214 748.4 595 67.6
BcaC08g45152 Brassica carinata HOM05D004730 ORTHO05D005705 7.5e-212 740.7 497 75.3
arahy.Tifrunner.gnm1.ann1.EBD5YY Arachis hypogaea HOM05D004730 ORTHO05D005705 3.7e-211 738.4 518 73.6
Sc23g0002110 Simmondsia chinensis HOM05D004730 ORTHO05D005705 1.1e-210 736.9 478 75.7
HanXRQChr11g0353001 Helianthus annuus HOM05D004730 ORTHO05D005705 1.8e-210 736.1 507 76.3
BraA07t30209Z Brassica rapa HOM05D004730 ORTHO05D005705 2.0e-209 732.6 463 79.7
A07p25690 Brassica napus HOM05D004730 ORTHO05D005705 5.9e-209 731.1 463 79.7
Sc01g0002740 Simmondsia chinensis HOM05D004730 ORTHO05D005705 7.8e-209 730.7 503 71.8
Manes.01G246700 Manihot esculenta HOM05D004730 ORTHO05D005705 5.7e-204 714.5 430 82.8
Aa31LG1G27820 Aethionema arabicum HOM05D004730 ORTHO05D005705 1.8e-202 709.5 508 70.7
Duzib133G1016 Durio zibethinus HOM05D004730 ORTHO05D005705 1.8e-202 709.5 514 71.6
TWI23G0180 Tripterygium wilfordii HOM05D004730 ORTHO05D005705 1.1e-199 700.3 516 69.2
unitig_62.g23797 Utricularia gibba HOM05D004730 ORTHO05D005705 5.6e-199 698.0 506 70.8
ATR0213G028 Amborella trichopoda HOM05D004730 ORTHO05D005705 6.2e-198 694.5 531 67.4
TWI59G0293 Tripterygium wilfordii HOM05D004730 ORTHO05D005705 4.0e-197 691.8 522 67.0
FAN01G1335 Fragaria x ananassa HOM05D004730 ORTHO05D005705 3.0e-192 675.6 415 81.7
AT3G61710 Arabidopsis thaliana HOM05D004730 ORTHO05D005705 7.8e-185 651.0 438 74.4
AUR62004484 Chenopodium quinoa HOM05D004730 ORTHO05D005705 6.2e-182 641.3 471 70.9
HPP92_011453 Vanilla planifolia HOM05D004730 ORTHO05D005705 2.0e-180 636.3 518 64.1
CDE05G0988 Ceratophyllum demersum HOM05D004730 ORTHO05D005705 9.6e-175 617.5 516 61.8
Os01g0681400 Oryza sativa ssp. japonica HOM05D004730 ORTHO05D005705 1.5e-172 610.1 487 64.1
Os03g0644000 Oryza sativa ssp. japonica HOM05D004730 ORTHO05D005705 5.8e-172 608.2 502 63.5
SEGI_06994 Sequoiadendron giganteum HOM05D004730 ORTHO05D005705 5.8e-172 608.2 506 61.5
Zm00001eb142950 Zea mays HOM05D004730 ORTHO05D005705 1.1e-170 604.0 492 64.4
Psat5g217520 Pisum sativum HOM05D004730 ORTHO05D005705 7.3e-167 591.3 384 77.9
Dinv35110 Davidia involucrata HOM05D004730 ORTHO05D005705 2.6e-164 582.8 371 80.9
Dinv32581 Davidia involucrata HOM05D004730 ORTHO05D005705 1.3e-163 580.5 371 80.9
Oeu019761.1 Olea europaea HOM05D004730 ORTHO05D005705 6.4e-163 578.2 342 83.3
SHI13286 Sapria himalayana HOM05D004730 ORTHO05D005705 2.4e-162 576.2 436 69.0
TAR374G0734 Trochodendron aralioides HOM05D004730 ORTHO05D005705 2.3e-160 569.7 364 79.1
Pp3c10_4130 Physcomitrium patens HOM05D004730 ORTHO05D005705 4.3e-159 565.5 493 60.0
Os03g0258500 Oryza sativa ssp. japonica HOM05D004730 ORTHO05D005705 4.8e-158 562.0 489 61.3
vmacro12679 Vaccinium macrocarpon HOM05D004730 ORTHO05D005705 1.9e-154 550.1 393 72.5
ClCG06G002220 Citrullus lanatus HOM05D004730 ORTHO05D005705 4.2e-154 548.9 355 78.6
Zm00001eb364100 Zea mays HOM05D004730 ORTHO05D005705 4.2e-154 548.9 492 58.1
Mapoly0091s0016 Marchantia polymorpha HOM05D004730 ORTHO05D005705 7.4e-151 538.1 545 54.5
Pp3c1_21510 Physcomitrium patens HOM05D004730 ORTHO05D005705 5.8e-148 528.5 505 56.0
SMO114G0122 Selaginella moellendorffii HOM05D004730 ORTHO05D005705 5.3e-141 505.4 496 54.8
CANSAT56G2405 Cannabis sativa HOM05D004730 ORTHO05D005705 1.2e-140 504.2 288 83.7
BolC6t37951H Brassica oleracea HOM05D004730 ORTHO05D005705 3.4e-140 502.7 357 74.8
AagrBONN_evm.TU.Sc2ySwM_344.2008 Anthoceros agrestis HOM05D004730 ORTHO05D005705 5.1e-136 488.8 507 51.7
Cpa.g.sc96.6 Carica papaya HOM05D004730 ORTHO05D005705 1.6e-129 467.2 338 74.0
Rhsim01G0172100 Rhododendron simsii HOM05D004730 ORTHO05D005705 2.0e-127 460.3 427 60.9
C06p27850 Brassica napus HOM05D004730 ORTHO05D006825 3.2e-114 416.4 365 65.2
CBR_g66692 Chara braunii HOM05D004730 ORTHO05D005705 1.6e-113 414.1 397 52.6
MBI01_g34153_MAGBIO Magnolia biondii HOM05D004730 ORTHO05D005705 2.6e-111 406.8 475 52.6
Ca_26857_v3 Cicer arietinum L. HOM05D004730 ORTHO05D005705 4.5e-108 396.0 320 65.9
Actinidia20237 Actinidia chinensis HOM05D004730 ORTHO05D005705 1.1e-93 348.2 296 63.9
TAR374G1455 Trochodendron aralioides HOM05D004730 ORTHO05D005705 2.8e-89 333.6 232 72.0
MBI01_g41444_MAGBIO Magnolia biondii HOM05D004730 ORTHO05D005705 3.7e-86 323.2 318 59.1
CARHR263800 Cardamine hirsuta HOM05D004730 ORTHO05D005705 1.8e-80 304.3 232 65.9
FAN01G0353 Fragaria x ananassa HOM05D004730 ORTHO05D005705 6.8e-80 302.4 163 84.7
MBI06_g41841_MAGBIO Magnolia biondii HOM05D004730 ORTHO05D005705 7.8e-76 288.9 219 65.3
Cre01.g020264 Chlamydomonas reinhardtii HOM05D004730 ORTHO05D005705 2.1e-73 280.8 396 39.9
Ca_26830_v3 Cicer arietinum L. HOM05D004730 ORTHO05D005705 3.2e-69 266.9 145 84.1
C06p27910 Brassica napus HOM05D000590 ORTHO05D006825 1.2e-65 255.0 208 69.2
Cpa.g.sc96.5 Carica papaya HOM05D004730 ORTHO05D005705 1.2e-63 248.4 146 78.8
Actinidia20236 Actinidia chinensis HOM05D004730 ORTHO05D005705 8.4e-62 242.3 145 79.3
MCO03G136 Micromonas commoda HOM05D004730 ORTHO05D005705 5.4e-61 239.6 306 42.2
PRCOL_00007095 Prasinoderma coloniale HOM05D004730 ORTHO05D005705 9.9e-55 218.8 330 41.8
Hma1.2p1_0295F.1_g116660 Hydrangea macrophylla HOM05D004730 ORTHO05D005705 2.7e-44 184.1 162 56.8
ATR0213G009 Amborella trichopoda HOM05D004730 ORTHO05D005705 3.1e-40 170.6 120 67.5
MBI01_g11796_MAGBIO Magnolia biondii HOM05D004730 ORTHO05D005705 5.5e-37 159.8 100 74.0
ATR0213G026 Amborella trichopoda HOM05D004730 ORTHO05D005705 9.3e-37 159.1 194 49.5
Ca_26856_v3 Cicer arietinum L. HOM05D004730 ORTHO05D005705 8.4e-30 136.0 117 65.8
arahy.Tifrunner.gnm1.ann1.PHUB4S Arachis hypogaea HOM05D004730 ORTHO05D005705 3.0e-27 127.5 68 85.3
Cfa022403 Carpinus fangiana HOM05D004730 ORTHO05D005705 1.1e-26 125.6 334 29.3
MBI10_g27627_MAGBIO Magnolia biondii HOM05D004730 ORTHO05D017720 5.7e-18 96.7 65 75.4
CDE08G1494 Ceratophyllum demersum HOM05D004730 ORTHO05D005705 9.7e-18 95.9 442 25.6
arahy.Tifrunner.gnm1.ann1.LSW4XK Arachis hypogaea HOM05D000092 ORTHO05D000042 1.3e-14 85.5 72 62.5
GSVIVG01027089001 Vitis vinifera HOM05D004730 ORTHO05D005705 5.0e-14 83.6 45 86.7
arahy.Tifrunner.gnm1.ann1.CLZ951 Arachis hypogaea HOM05D004730 ORTHO05D005705 3.0e-11 74.3 75 54.7
CDE08G0541 Ceratophyllum demersum HOM05D004730 ORTHO05D005705 5.7e-10 70.1 99 49.5
MBI01_g41445_MAGBIO Magnolia biondii HOM05D004730 ORTHO05D005705 7.4e-10 69.7 58 55.2
arahy.Tifrunner.gnm1.ann1.VTA1BU Arachis hypogaea HOM05D004730 ORTHO05D005705 4.8e-09 67.0 101 43.6
Nn1g06163 Nelumbo nucifera HOM05D004730 ORTHO05D005705 2.0e-07 61.6 44 54.5
SHI13287 Sapria himalayana HOM05D005377 ORTHO05D003034 2.6e-07 61.2 58 44.8
CARHR263810 Cardamine hirsuta HOM05D004730 ORTHO05D005705 7.7e-07 59.7 112 41.1


User provided reference genes

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