Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR031G3837 Punica granatum HOM05D006505 ORTHO05D008086 4.7e-149 531.2 270 100.0
Eucgr.D02590 Eucalyptus grandis HOM05D006505 ORTHO05D008086 5.3e-68 261.9 279 57.3
Ciclev10016360m.g Citrus clementina HOM05D006505 ORTHO05D008086 1.9e-65 253.4 200 68.0
QL09p007239 Quercus lobata HOM05D006505 ORTHO05D008086 6.1e-64 248.4 266 55.3
CiPaw.05G198000 Carya illinoinensis HOM05D006505 ORTHO05D008086 2.2e-61 240.0 198 65.2
Haze_00287 Corylus avellana HOM05D006505 ORTHO05D008086 5.3e-60 235.3 239 54.4
Cfa016168 Carpinus fangiana HOM05D006505 ORTHO05D008086 9.1e-60 234.6 221 58.4
CSS0001335 Camellia sinensis var. sinensis HOM05D006505 ORTHO05D008086 2.6e-59 233.0 199 64.3
CSS0032447 Camellia sinensis var. sinensis HOM05D006505 ORTHO05D008086 2.6e-59 233.0 199 64.3
CSS0016706 Camellia sinensis var. sinensis HOM05D006505 ORTHO05D008086 5.9e-59 231.9 199 64.3
CSS0048860 Camellia sinensis var. sinensis HOM05D006505 ORTHO05D008086 5.9e-59 231.9 199 64.3
MD10G1029200 Malus domestica HOM05D006505 ORTHO05D008086 1.3e-58 230.7 174 66.1
Prupe.8G075800 Prunus persica HOM05D006505 ORTHO05D008086 2.9e-58 229.6 174 68.4
CSS0043282 Camellia sinensis var. sinensis HOM05D006505 ORTHO05D008086 5.0e-58 228.8 199 63.3
Lj9C390T7 Lonicera japonica HOM05D006505 ORTHO05D008086 5.0e-58 228.8 198 59.6
Hund04368 Selenicereus undatus HOM05D000185 ORTHO05D008086 8.5e-58 228.0 197 60.9
Hund04411 Selenicereus undatus HOM05D006505 ORTHO05D008086 8.5e-58 228.0 197 60.9
Rhsim11G0024600 Rhododendron simsii HOM05D006505 ORTHO05D008086 2.5e-57 226.5 200 60.0
RcHm_v2.0_Chr7g0213441 Rosa chinensis HOM05D006505 ORTHO05D008086 5.5e-57 225.3 175 67.4
CANSAT01G1182 Cannabis sativa HOM05D006505 ORTHO05D008086 7.2e-57 224.9 170 70.0
MD05G1028600 Malus domestica HOM05D006505 ORTHO05D008086 1.0e-55 221.1 174 66.1
Thecc.05G317100 Theobroma cacao HOM05D006505 ORTHO05D008086 1.8e-55 220.3 253 54.5
FAN13G1156 Fragaria x ananassa HOM05D005388 ORTHO05D006281 3.0e-55 219.5 176 64.8
FAN18G0596 Fragaria x ananassa HOM05D005388 ORTHO05D006281 3.0e-55 219.5 176 64.8
Duzib177G0740 Durio zibethinus HOM05D006505 ORTHO05D008086 1.2e-54 217.6 207 58.5
FAN08G1835 Fragaria x ananassa HOM05D005388 ORTHO05D006281 9.8e-54 214.5 173 63.6
Atru.chr5.2699 Acer truncatum HOM05D006505 ORTHO05D008086 1.3e-53 214.2 169 66.9
AUR62014209 Chenopodium quinoa HOM05D006505 ORTHO05D008086 1.1e-52 211.1 249 51.8
AUR62038510 Chenopodium quinoa HOM05D006505 ORTHO05D008086 1.8e-52 210.3 247 51.4
TWI56G0195 Tripterygium wilfordii HOM05D006505 ORTHO05D008086 1.8e-52 210.3 152 70.4
Sc03g0004060 Simmondsia chinensis HOM05D006505 ORTHO05D008086 2.4e-52 209.9 211 55.9
vmacro00059 Vaccinium macrocarpon HOM05D006505 ORTHO05D008086 1.2e-51 207.6 140 72.9
EL10Ac7g17956 Beta vulgaris HOM05D006505 ORTHO05D008086 2.0e-51 206.8 188 58.5
Lalb_Chr03g0033021 Lupinus albus HOM05D006505 ORTHO05D008086 4.5e-51 205.7 175 61.7
EL10Ac1g01458 Beta vulgaris HOM05D006505 ORTHO05D008086 7.7e-51 204.9 194 58.8
ClCG10G009230 Citrullus lanatus HOM05D006505 ORTHO05D008086 6.5e-50 201.8 178 61.8
COL.COLO4_03796 Corchorus olitorius HOM05D006505 ORTHO05D008086 6.5e-50 201.8 203 57.6
Nitab4.5_0013752g0010 Nicotiana tabacum HOM05D006505 ORTHO05D008086 2.5e-49 199.9 198 54.0
Ca_04162_v3 Cicer arietinum L. HOM05D006505 ORTHO05D008086 3.2e-49 199.5 177 59.9
Nitab4.5_0000030g0150 Nicotiana tabacum HOM05D006505 ORTHO05D008086 7.2e-49 198.4 199 53.8
Glyma.09G152000 Glycine max HOM05D006505 ORTHO05D008086 2.1e-48 196.8 177 59.3
CAN.G900.13 Capsicum annuum HOM05D006505 ORTHO05D008086 2.7e-48 196.4 200 53.5
CsaV3_4G009410 Cucumis sativus L. HOM05D006505 ORTHO05D008086 6.1e-48 195.3 176 59.7
Medtr6g004800 Medicago truncatula HOM05D006505 ORTHO05D008086 6.1e-48 195.3 177 59.9
Nitab4.5_0000009g0140 Nicotiana tabacum HOM05D006505 ORTHO05D008086 6.1e-48 195.3 198 52.5
Nitab4.5_0002941g0010 Nicotiana tabacum HOM05D006505 ORTHO05D008086 6.1e-48 195.3 248 47.2
TPR.G33266 Trifolium pratense HOM05D006505 ORTHO05D008086 6.1e-48 195.3 256 47.3
Medtr2g103160 Medicago truncatula HOM05D006505 ORTHO05D008086 1.0e-47 194.5 185 55.7
Psat5g300640 Pisum sativum HOM05D006505 ORTHO05D008086 1.0e-47 194.5 169 60.4
Lj2g0010245 Lotus japonicus HOM05D006505 ORTHO05D008086 2.3e-47 193.4 174 58.0
Lsat_1_v5_gn_5_56361 Lactuca sativa HOM05D006505 ORTHO05D008086 3.0e-47 193.0 134 69.4
Glyma.16G202700 Glycine max HOM05D006505 ORTHO05D008086 5.2e-47 192.2 177 58.2
VMungo0464G0461 Vigna mungo HOM05D006505 ORTHO05D008086 5.2e-47 192.2 179 57.5
arahy.Tifrunner.gnm1.ann1.XVHH14 Arachis hypogaea HOM05D006505 ORTHO05D008086 6.8e-47 191.8 185 54.6
MELO3C019016.2 Cucumis melo HOM05D006505 ORTHO05D008086 8.8e-47 191.4 202 54.5
Lsat_1_v5_gn_3_68661 Lactuca sativa HOM05D006505 ORTHO05D008086 1.2e-46 191.0 134 68.7
Phvul.004G125700 Phaseolus vulgaris HOM05D006505 ORTHO05D008086 1.2e-46 191.0 179 57.0
Phvul.007G023100 Phaseolus vulgaris HOM05D006505 ORTHO05D008086 1.5e-46 190.7 173 59.5
arahy.Tifrunner.gnm1.ann1.P5KSQZ Arachis hypogaea HOM05D006505 ORTHO05D008086 2.6e-46 189.9 177 55.9
arahy.Tifrunner.gnm1.ann1.VH9XRT Arachis hypogaea HOM05D006505 ORTHO05D008086 4.4e-46 189.1 177 55.9
Sopen08g024370 Solanum pennellii HOM05D006505 ORTHO05D008086 1.3e-45 187.6 238 47.1
PGSC0003DMG400030869 Solanum tuberosum HOM05D006505 ORTHO05D008086 1.3e-45 187.6 238 47.1
Sed0012178 Sechium edule HOM05D006505 ORTHO05D008086 2.2e-45 186.8 123 76.4
THA.LOC104798517 Tarenaya hassleriana HOM05D006505 ORTHO05D008086 2.8e-45 186.4 175 56.0
Manes.13G075298 Manihot esculenta HOM05D006505 ORTHO05D008086 3.7e-45 186.0 201 52.2
TPR.G1934 Trifolium pratense HOM05D002510 ORTHO05D006928 3.7e-45 186.0 187 54.0
HanXRQChr10g0282371 Helianthus annuus HOM05D006505 ORTHO05D008086 4.9e-45 185.7 177 55.9
Manes.09G083900 Manihot esculenta HOM05D006505 ORTHO05D008086 1.4e-44 184.1 224 49.6
Oeu059435.1 Olea europaea HOM05D006505 ORTHO05D008086 2.4e-44 183.3 196 53.1
BcaC05g27199 Brassica carinata HOM05D006505 ORTHO05D008086 9.1e-44 181.4 268 44.4
BolC5t31830H Brassica oleracea HOM05D006505 ORTHO05D008086 9.1e-44 181.4 268 44.4
THA.LOC104798644 Tarenaya hassleriana HOM05D006505 ORTHO05D008086 9.1e-44 181.4 173 54.3
Potri.007G117700 Populus trichocarpa HOM05D006505 ORTHO05D008086 3.5e-43 179.5 185 55.7
Thhalv10008153m.g Eutrema salsugineum HOM05D006505 ORTHO05D008086 5.9e-43 178.7 179 53.6
Sp1g27520 Schrenkiella parvula HOM05D006505 ORTHO05D008086 5.9e-43 178.7 179 53.6
A09p34510 Brassica napus HOM05D006505 ORTHO05D008086 1.3e-42 177.6 179 54.2
BraA09t38992Z Brassica rapa HOM05D006505 ORTHO05D008086 1.3e-42 177.6 179 54.7
C05p31050 Brassica napus HOM05D006505 ORTHO05D008086 2.3e-42 176.8 242 47.1
AL5G22520 Arabidopsis lyrata HOM05D006505 ORTHO05D008086 2.9e-42 176.4 175 52.6
BcaB07g32834 Brassica carinata HOM05D006505 ORTHO05D008086 2.9e-42 176.4 187 53.5
Nn1g10029 Nelumbo nucifera HOM05D006505 ORTHO05D008086 2.9e-42 176.4 178 53.9
Nn1g10155 Nelumbo nucifera HOM05D006505 ORTHO05D008086 2.9e-42 176.4 178 53.9
Solyc08g075720.3 Solanum lycopersicum HOM05D006505 ORTHO05D008086 2.9e-42 176.4 175 54.9
Carub.0001s3014 Capsella rubella HOM05D006505 ORTHO05D008086 3.8e-42 176.0 175 53.1
AT1G31817 Arabidopsis thaliana HOM05D006505 ORTHO05D008086 5.0e-42 175.6 175 52.0
Gohir.D08G224600 Gossypium hirsutum HOM05D006505 ORTHO05D008086 8.6e-42 174.9 179 54.2
Gorai.004G238500 Gossypium raimondii HOM05D006505 ORTHO05D008086 4.2e-41 172.6 179 53.6
Actinidia01261 Actinidia chinensis HOM05D006505 ORTHO05D008086 9.5e-41 171.4 162 56.2
Cc11_g05460 Coffea canephora HOM05D006505 ORTHO05D008086 9.5e-41 171.4 173 56.6
Gohir.A08G207900 Gossypium hirsutum HOM05D006505 ORTHO05D008086 2.1e-40 170.2 179 53.1
Ah.03g147810 Amaranthus hybridus HOM05D006505 ORTHO05D008086 2.8e-40 169.9 129 64.3
CARHR031150 Cardamine hirsuta HOM05D006505 ORTHO05D008086 2.3e-39 166.8 263 39.9
Aa31LG2G14220 Aethionema arabicum HOM05D006505 ORTHO05D008086 5.2e-39 165.6 186 51.6
Migut.A00568 Erythranthe guttata HOM05D006505 ORTHO05D008086 6.8e-39 165.2 212 45.3
Os03g0385900 Oryza sativa ssp. japonica HOM05D006505 ORTHO05D008086 7.5e-38 161.8 125 64.0
GSVIVG01031638001 Vitis vinifera HOM05D006505 ORTHO05D008086 9.8e-38 161.4 195 48.7
Cpa.g.sc48.17 Carica papaya HOM05D006505 ORTHO05D008086 1.7e-37 160.6 161 54.7
Zm00001eb342930 Zea mays HOM05D006505 ORTHO05D008086 8.3e-37 158.3 155 54.8
Peaxi162Scf00193g00002 Petunia axillaris HOM05D006505 ORTHO05D008086 1.1e-36 157.9 170 50.6
Aqoxy1G02002 Aquilegia oxysepala HOM05D006505 ORTHO05D008086 1.4e-36 157.5 123 64.2
MSTRG.25731 Avicennia marina HOM05D006505 ORTHO05D008086 3.2e-36 156.4 179 49.2
AL1G45900 Arabidopsis lyrata HOM05D006505 ORTHO05D008086 1.2e-35 154.5 164 49.4
SalBow4G2740 Salvia bowleyana HOM05D006505 ORTHO05D008086 1.7e-34 150.6 188 44.7
SGA_v2.0_scaffold89G27392 Striga asiatica HOM05D006505 ORTHO05D008086 8.6e-34 148.3 203 42.9
unitig_0.g2835 Utricularia gibba HOM05D006505 ORTHO05D008086 1.2e-32 144.4 135 54.1
Rhsim11G0030300 Rhododendron simsii HOM05D001695 ORTHO05D008931 3.1e-31 139.8 92 73.9
BcaB03g13787 Brassica carinata HOM05D006505 ORTHO05D008086 8.9e-31 138.3 153 51.0
CDE02G2054 Ceratophyllum demersum HOM05D006505 ORTHO05D008086 9.8e-30 134.8 129 54.3
ECA240G0490 Erigeron canadensis HOM05D006505 ORTHO05D008086 1.3e-29 134.4 113 61.1
Rhsim01G0291600 Rhododendron simsii HOM05D006505 ORTHO05D008086 7.0e-28 128.6 133 54.9
SGA_v2.0_scaffold96G29075 Striga asiatica HOM05D006505 ORTHO05D008086 6.0e-27 125.6 232 37.5
Nn1g10037 Nelumbo nucifera HOM05D006505 ORTHO05D008086 1.3e-26 124.4 95 64.2
C05p39630 Brassica napus HOM05D006505 ORTHO05D008086 5.0e-26 122.5 105 57.1
BolC5t32703H Brassica oleracea HOM05D006505 ORTHO05D008086 1.5e-25 120.9 107 57.9
Dinv41818 Davidia involucrata HOM05D001955 ORTHO05D001917 4.0e-23 112.8 189 41.8
TAR636G3390 Trochodendron aralioides HOM05D006505 ORTHO05D008086 3.4e-22 109.8 118 52.5
BcaC05g27958 Brassica carinata HOM05D004130 ORTHO05D004705 9.2e-20 101.7 80 58.8
Actinidia32777 Actinidia chinensis HOM05D006505 ORTHO05D008086 4.7e-16 89.4 108 48.1
MBI05_g23315_MAGBIO Magnolia biondii HOM05D006505 ORTHO05D008086 4.0e-15 86.3 69 58.0
AagrBONN_evm.TU.Sc2ySwM_340.30 Anthoceros agrestis HOM05D000964 ORTHO05D003870 1.4e-12 77.8 122 39.3
CAN.G601.5 Capsicum annuum HOM05D006505 ORTHO05D008086 9.2e-12 75.1 104 43.3
SMO340G0059 Selaginella moellendorffii HOM05D000964 ORTHO05D003870 2.1e-11 73.9 121 36.4
Sed0026211 Sechium edule HOM05D006505 ORTHO05D008086 3.5e-11 73.2 99 44.4
PSO339G5687 Papaver somniferum HOM05D006505 ORTHO05D008086 2.1e-08 63.9 66 47.0
PSO384G0602 Papaver somniferum HOM05D006505 ORTHO05D008086 2.1e-08 63.9 66 47.0
Cre06.g288400 Chlamydomonas reinhardtii HOM05D000964 ORTHO05D003870 2.8e-08 63.5 124 39.5
PSO648G0043 Papaver somniferum HOM05D006505 ORTHO05D008086 2.8e-08 63.5 66 47.0
PSO339G1081 Papaver somniferum HOM05D006505 ORTHO05D008086 1.1e-07 61.6 66 45.5
arahy.Tifrunner.gnm1.ann1.U4I6QC Arachis hypogaea HOM05D000964 ORTHO05D003870 1.2e-06 58.2 123 35.0
Cfa018462 Carpinus fangiana HOM05D000964 ORTHO05D003870 2.6e-06 57.0 123 35.0
CAN.G1595.3 Capsicum annuum HOM05D000964 ORTHO05D003870 4.4e-06 56.2 123 32.5
Solyc00g500030.1 Solanum lycopersicum HOM05D000964 ORTHO05D003870 4.4e-06 56.2 123 32.5
Solyc00g500075.1 Solanum lycopersicum HOM05D000964 ORTHO05D003870 4.4e-06 56.2 123 32.5
Gohir.A05G326932 Gossypium hirsutum HOM05D000964 ORTHO05D003870 9.9e-06 55.1 123 30.9


User provided reference genes

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