Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR031G3794 Punica granatum HOM05D004082 ORTHO05D004729 0.0e+00 2068.9 981 100.0
Haze_04194 Corylus avellana HOM05D004082 ORTHO05D004729 0.0e+00 1715.7 980 81.8
QL03p007071 Quercus lobata HOM05D004082 ORTHO05D004729 0.0e+00 1699.5 978 81.0
CiPaw.07G018100 Carya illinoinensis HOM05D004082 ORTHO05D004729 0.0e+00 1688.3 977 80.7
Potri.013G021200 Populus trichocarpa HOM05D004082 ORTHO05D004729 0.0e+00 1684.1 979 81.0
Duzib106G1815 Durio zibethinus HOM05D004082 ORTHO05D004729 0.0e+00 1674.8 979 81.1
Ciclev10000150m.g Citrus clementina HOM05D004082 ORTHO05D004729 0.0e+00 1674.1 991 80.0
Sabra13G0023600 Salix brachista HOM05D004082 ORTHO05D004729 0.0e+00 1671.0 979 80.1
Eucgr.H04490 Eucalyptus grandis HOM05D004082 ORTHO05D004729 0.0e+00 1668.7 998 79.9
Prupe.6G325300 Prunus persica HOM05D004082 ORTHO05D004729 0.0e+00 1668.7 980 80.3
Dinv40289 Davidia involucrata HOM05D004082 ORTHO05D004729 0.0e+00 1667.9 963 81.5
TWI56G0720 Tripterygium wilfordii HOM05D004082 ORTHO05D004729 0.0e+00 1667.9 979 80.0
Manes.08G120500 Manihot esculenta HOM05D004082 ORTHO05D004729 0.0e+00 1667.5 977 80.2
Gohir.D13G110800 Gossypium hirsutum HOM05D004082 ORTHO05D004729 0.0e+00 1667.1 979 81.5
Thecc.05G302900 Theobroma cacao HOM05D004082 ORTHO05D004729 0.0e+00 1665.2 978 80.7
CSS0005144 Camellia sinensis var. sinensis HOM05D004082 ORTHO05D004729 0.0e+00 1664.4 982 79.8
Duzib177G1172 Durio zibethinus HOM05D004082 ORTHO05D004729 0.0e+00 1660.2 978 80.7
MD12G1218800 Malus domestica HOM05D004082 ORTHO05D004729 0.0e+00 1652.9 981 79.8
GSVIVG01000073001 Vitis vinifera HOM05D004082 ORTHO05D004729 0.0e+00 1652.5 979 79.7
TAR636G3250 Trochodendron aralioides HOM05D004082 ORTHO05D004729 0.0e+00 1647.9 977 78.4
Gorai.007G297200 Gossypium raimondii HOM05D004082 ORTHO05D004729 0.0e+00 1644.0 978 79.6
Lj5C472G3 Lonicera japonica HOM05D004082 ORTHO05D004729 0.0e+00 1632.5 978 78.7
Lj5C530G2 Lonicera japonica HOM05D004082 ORTHO05D004729 0.0e+00 1629.8 978 78.5
DCAR_022172 Daucus carota HOM05D004082 ORTHO05D004729 0.0e+00 1623.6 978 78.4
Cpa.g.sc48.57 Carica papaya HOM05D004082 ORTHO05D004729 0.0e+00 1618.2 978 78.4
CANSAT54G2367 Cannabis sativa HOM05D004082 ORTHO05D004729 0.0e+00 1615.5 984 77.7
Lj5g0001168 Lotus japonicus HOM05D004082 ORTHO05D004729 0.0e+00 1614.4 972 78.7
RcHm_v2.0_Chr3g0454891 Rosa chinensis HOM05D004082 ORTHO05D004729 0.0e+00 1608.6 979 76.8
Peaxi162Scf00037g00423 Petunia axillaris HOM05D004082 ORTHO05D004729 0.0e+00 1607.0 977 76.5
FAN05G3196 Fragaria x ananassa HOM05D004082 ORTHO05D004729 0.0e+00 1605.9 987 77.2
FvH4_6g05900 Fragaria vesca HOM05D004082 ORTHO05D004729 0.0e+00 1601.3 977 77.5
Prupe.6G325400 Prunus persica HOM05D004082 ORTHO05D004729 0.0e+00 1600.9 979 76.7
FAN05G5148 Fragaria x ananassa HOM05D004082 ORTHO05D004729 0.0e+00 1596.3 987 77.1
Sc16g0008480 Simmondsia chinensis HOM05D004082 ORTHO05D004729 0.0e+00 1595.5 978 75.9
Glyma.20G233900 Glycine max HOM05D004082 ORTHO05D004729 0.0e+00 1592.4 976 77.5
Psat6g151160 Pisum sativum HOM05D004082 ORTHO05D004729 0.0e+00 1582.8 977 76.3
PGSC0003DMG401024737 Solanum tuberosum HOM05D004082 ORTHO05D004729 0.0e+00 1582.8 974 76.4
Medtr1g082890 Medicago truncatula HOM05D004082 ORTHO05D004729 0.0e+00 1581.6 976 76.1
Sopen01g042650 Solanum pennellii HOM05D004082 ORTHO05D004729 0.0e+00 1579.7 975 76.4
TPR.G6044 Trifolium pratense HOM05D004082 ORTHO05D004729 0.0e+00 1579.7 974 76.3
Glyma.10G154400 Glycine max HOM05D004082 ORTHO05D004729 0.0e+00 1579.3 976 76.7
Cc02_g33390 Coffea canephora HOM05D004082 ORTHO05D004729 0.0e+00 1575.8 978 76.3
DCAR_003333 Daucus carota HOM05D004082 ORTHO05D004729 0.0e+00 1575.5 980 76.2
Oeu038297.1 Olea europaea HOM05D004082 ORTHO05D004729 0.0e+00 1575.1 984 76.5
VMungo0720G1572 Vigna mungo HOM05D004082 ORTHO05D004729 0.0e+00 1575.1 969 77.1
Medtr7g113570 Medicago truncatula HOM05D004082 ORTHO05D004729 0.0e+00 1574.3 966 76.2
Solyc01g099090.3 Solanum lycopersicum HOM05D004082 ORTHO05D004729 0.0e+00 1574.3 975 76.0
Phvul.007G180100 Phaseolus vulgaris HOM05D004082 ORTHO05D004729 0.0e+00 1573.9 971 76.9
Aqoxy5G00500 Aquilegia oxysepala HOM05D004082 ORTHO05D004729 0.0e+00 1572.4 979 75.9
Sed0016495 Sechium edule HOM05D004082 ORTHO05D004729 0.0e+00 1572.4 982 75.6
FAN14G3006 Fragaria x ananassa HOM05D004082 ORTHO05D004729 0.0e+00 1570.4 957 77.5
TPR.G33180 Trifolium pratense HOM05D004082 ORTHO05D004729 0.0e+00 1570.1 981 75.6
Ca_10110_v3 Cicer arietinum L. HOM05D004082 ORTHO05D004729 0.0e+00 1569.3 979 75.8
Psat3g011080 Pisum sativum HOM05D004082 ORTHO05D004729 0.0e+00 1566.2 980 76.4
Phvul.006G092100 Phaseolus vulgaris HOM05D004082 ORTHO05D004729 0.0e+00 1563.9 973 75.6
CAN.G1034.45 Capsicum annuum HOM05D004082 ORTHO05D004729 0.0e+00 1562.7 980 75.2
MELO3C015324.2 Cucumis melo HOM05D004082 ORTHO05D004729 0.0e+00 1561.6 979 74.6
Glyma.19G235500 Glycine max HOM05D004082 ORTHO05D004729 0.0e+00 1560.8 966 76.1
MD12G1218900 Malus domestica HOM05D004082 ORTHO05D004729 0.0e+00 1560.8 978 74.5
Hund07072 Selenicereus undatus HOM05D004082 ORTHO05D004729 0.0e+00 1557.7 966 75.9
Lj1g0013013 Lotus japonicus HOM05D004082 ORTHO05D004729 0.0e+00 1557.3 977 74.9
TWI56G1006 Tripterygium wilfordii HOM05D004082 ORTHO05D004729 0.0e+00 1557.3 977 75.9
CsaV3_1G038970 Cucumis sativus L. HOM05D004082 ORTHO05D004729 0.0e+00 1551.2 982 74.7
arahy.Tifrunner.gnm1.ann1.0R76NZ Arachis hypogaea HOM05D004082 ORTHO05D004729 0.0e+00 1546.6 992 73.5
MSTRG.27997 Avicennia marina HOM05D004082 ORTHO05D004729 0.0e+00 1545.4 981 74.4
ECA236G4884 Erigeron canadensis HOM05D004082 ORTHO05D004729 0.0e+00 1544.6 977 74.3
Lalb_Chr02g0148261 Lupinus albus HOM05D004082 ORTHO05D004729 0.0e+00 1544.3 974 74.6
Ah.06g189390 Amaranthus hybridus HOM05D004082 ORTHO05D004729 0.0e+00 1543.5 971 75.3
VMungo0540G1737 Vigna mungo HOM05D004082 ORTHO05D004729 0.0e+00 1541.9 973 74.6
ClCG03G016970 Citrullus lanatus HOM05D004082 ORTHO05D004729 0.0e+00 1538.9 979 74.0
SalBow3G1583 Salvia bowleyana HOM05D004082 ORTHO05D004729 0.0e+00 1538.5 983 74.5
arahy.Tifrunner.gnm1.ann1.7P2G6T Arachis hypogaea HOM05D004082 ORTHO05D004729 0.0e+00 1538.1 982 74.1
arahy.Tifrunner.gnm1.ann1.MMBS5J Arachis hypogaea HOM05D004082 ORTHO05D004729 0.0e+00 1538.1 987 73.7
EL10Ac4g09354 Beta vulgaris HOM05D004082 ORTHO05D004729 0.0e+00 1536.2 977 73.5
FAN09G0543 Fragaria x ananassa HOM05D004082 ORTHO05D004729 0.0e+00 1535.4 934 77.4
Glyma.03G238100 Glycine max HOM05D004082 ORTHO05D004729 0.0e+00 1534.6 987 73.8
HanXRQChr02g0046191 Helianthus annuus HOM05D004082 ORTHO05D004729 0.0e+00 1530.8 979 73.4
vmacro05017 Vaccinium macrocarpon HOM05D004082 ORTHO05D004729 0.0e+00 1530.8 977 74.7
Lalb_Chr18g0045631 Lupinus albus HOM05D004082 ORTHO05D004729 0.0e+00 1529.2 975 74.6
RhsimUnG0226200 Rhododendron simsii HOM05D004082 ORTHO05D004729 0.0e+00 1527.7 946 75.8
arahy.Tifrunner.gnm1.ann1.DUKX6J Arachis hypogaea HOM05D004082 ORTHO05D004729 0.0e+00 1523.8 982 73.7
AUR62000827 Chenopodium quinoa HOM05D004082 ORTHO05D004729 0.0e+00 1517.3 977 73.2
PSO832G1048 Papaver somniferum HOM05D004082 ORTHO05D004729 0.0e+00 1515.0 982 73.1
SGA_v2.0_scaffold81G26069 Striga asiatica HOM05D004082 ORTHO05D004729 0.0e+00 1513.0 979 72.1
Migut.N02007 Erythranthe guttata HOM05D004082 ORTHO05D004729 0.0e+00 1505.3 980 73.2
Nitab4.5_0000137g0200 Nicotiana tabacum HOM05D004082 ORTHO05D004729 0.0e+00 1503.8 966 74.9
Nn1g02247 Nelumbo nucifera HOM05D004082 ORTHO05D004729 0.0e+00 1500.7 977 72.8
Aqoxy2G03354 Aquilegia oxysepala HOM05D004082 ORTHO05D004729 0.0e+00 1493.4 973 71.1
Os05g0391500 Oryza sativa ssp. japonica HOM05D004082 ORTHO05D004729 0.0e+00 1490.3 981 70.6
Zm00001eb287240 Zea mays HOM05D004082 ORTHO05D004729 0.0e+00 1488.0 982 70.8
COL.COLO4_13463 Corchorus olitorius HOM05D004082 ORTHO05D004729 0.0e+00 1487.6 998 72.4
THA.LOC104805875 Tarenaya hassleriana HOM05D004082 ORTHO05D004729 0.0e+00 1475.3 983 71.5
AUR62005147 Chenopodium quinoa HOM05D004082 ORTHO05D004729 0.0e+00 1471.1 969 71.5
Aa31sc136G30 Aethionema arabicum HOM05D004082 ORTHO05D004729 0.0e+00 1467.6 984 71.6
Gohir.A11G265200 Gossypium hirsutum HOM05D004082 ORTHO05D004729 0.0e+00 1467.6 878 78.4
Lsat_1_v5_gn_9_86081 Lactuca sativa HOM05D004082 ORTHO05D004729 0.0e+00 1466.4 983 70.6
vmacro22529 Vaccinium macrocarpon HOM05D004082 ORTHO05D004729 0.0e+00 1465.3 882 77.4
HPP92_001021 Vanilla planifolia HOM05D004082 ORTHO05D004729 0.0e+00 1454.1 976 70.5
AL1G19440 Arabidopsis lyrata HOM05D004082 ORTHO05D004729 0.0e+00 1449.1 985 70.6
Gohir.A13G107600 Gossypium hirsutum HOM05D004082 ORTHO05D004729 0.0e+00 1448.3 852 80.9
AT1G09010 Arabidopsis thaliana HOM05D004082 ORTHO05D004729 0.0e+00 1437.2 980 69.9
CARHR008900 Cardamine hirsuta HOM05D004082 ORTHO05D004729 0.0e+00 1436.8 980 70.0
A08p34860 Brassica napus HOM05D004082 ORTHO05D004729 0.0e+00 1434.9 980 70.0
Carub.0001s0833 Capsella rubella HOM05D004082 ORTHO05D004729 0.0e+00 1432.9 981 69.6
BraA08t35397Z Brassica rapa HOM05D004082 ORTHO05D004729 0.0e+00 1432.5 980 69.9
Migut.B01033 Erythranthe guttata HOM05D004082 ORTHO05D004729 0.0e+00 1431.4 973 69.1
Sp1g07620 Schrenkiella parvula HOM05D004082 ORTHO05D004729 0.0e+00 1430.2 981 69.9
C05p07040 Brassica napus HOM05D004082 ORTHO05D004729 0.0e+00 1429.8 982 70.1
BolC5t29459H Brassica oleracea HOM05D004082 ORTHO05D004729 0.0e+00 1429.8 982 70.1
Gohir.D11G275400 Gossypium hirsutum HOM05D004082 ORTHO05D004729 0.0e+00 1429.1 858 78.7
A06p05830 Brassica napus HOM05D004082 ORTHO05D004729 0.0e+00 1428.3 981 69.5
BolC8t48880H Brassica oleracea HOM05D004082 ORTHO05D004729 0.0e+00 1425.6 980 70.6
Hund21813 Selenicereus undatus HOM05D004082 ORTHO05D004729 0.0e+00 1424.5 986 68.8
C08p12400 Brassica napus HOM05D004082 ORTHO05D004729 0.0e+00 1420.2 980 70.4
BcaB07g34118 Brassica carinata HOM05D004082 ORTHO05D004729 0.0e+00 1410.2 981 69.5
Thhalv10006730m.g Eutrema salsugineum HOM05D004082 ORTHO05D004729 0.0e+00 1399.8 981 69.0
arahy.Tifrunner.gnm1.ann1.HF1TD9 Arachis hypogaea HOM05D004082 ORTHO05D004729 0.0e+00 1357.8 762 81.1
SHI18140 Sapria himalayana HOM05D004082 ORTHO05D004729 0.0e+00 1350.1 1006 64.0
BcaC07g38468 Brassica carinata HOM05D004082 ORTHO05D004729 0.0e+00 1345.9 980 67.7
unitig_52.g17387 Utricularia gibba HOM05D004082 ORTHO05D004729 0.0e+00 1344.7 988 64.9
BcaC07g38465 Brassica carinata HOM05D004082 ORTHO05D004729 0.0e+00 1311.2 984 66.3
BcaC05g24752 Brassica carinata HOM05D004082 ORTHO05D004729 0.0e+00 1294.3 984 65.2
Gorai.013G124100 Gossypium raimondii HOM05D004082 ORTHO05D004729 0.0e+00 1285.0 771 79.9
Ca_09358_v3 Cicer arietinum L. HOM05D004082 ORTHO05D004729 0.0e+00 1240.3 789 74.1
BraA06t23793Z Brassica rapa HOM05D004082 ORTHO05D004729 0.0e+00 1239.6 854 69.3
ATR0626G266 Amborella trichopoda HOM05D004082 ORTHO05D004729 0.0e+00 1213.0 787 72.3
Migut.O00505 Erythranthe guttata HOM05D004082 ORTHO05D004729 0.0e+00 1209.5 791 73.1
CDE05G1313 Ceratophyllum demersum HOM05D004082 ORTHO05D004729 4.9e-305 1051.2 688 72.7
Mapoly0034s0073 Marchantia polymorpha HOM05D004082 ORTHO05D004729 3.6e-300 1035.0 983 53.1
SMO367G0677 Selaginella moellendorffii HOM05D004082 ORTHO05D004729 6.9e-299 1030.8 969 53.4
Lj9A80G16 Lonicera japonica HOM05D004082 ORTHO05D004729 3.2e-280 968.8 708 66.7
Pp3c8_17060 Physcomitrium patens HOM05D004082 ORTHO05D004729 1.5e-277 959.9 968 52.0
AagrBONN_evm.TU.Sc2ySwM_368.1060 Anthoceros agrestis HOM05D004082 ORTHO05D004729 8.8e-270 934.1 965 49.6
Pp3c15_10050 Physcomitrium patens HOM05D004082 ORTHO05D004729 5.5e-264 914.8 982 48.9
Nitab4.5_0003227g0010 Nicotiana tabacum HOM05D004082 ORTHO05D004729 7.0e-259 897.9 569 75.6
CBR_g23107 Chara braunii HOM05D004082 ORTHO05D004729 1.0e-230 804.3 843 49.5
Nitab4.5_0003227g0030 Nicotiana tabacum HOM05D004082 ORTHO05D004729 8.9e-206 721.5 402 81.3
MBI17_g12862_MAGBIO Magnolia biondii HOM05D004082 ORTHO05D004729 6.1e-138 496.1 288 80.6
Atru.chr1.88 Acer truncatum HOM05D004082 ORTHO05D004729 8.5e-124 449.1 414 57.0
CAN.G623.33 Capsicum annuum HOM05D004082 ORTHO05D004729 3.8e-116 423.7 380 60.5
QL03p006635 Quercus lobata HOM05D004082 ORTHO05D004729 2.5e-115 421.0 342 62.0
Atru.chr2.402 Acer truncatum HOM05D004082 ORTHO05D004729 4.4e-112 410.2 222 85.6
Gorai.013G124200 Gossypium raimondii HOM05D004082 ORTHO05D004729 5.8e-96 356.7 192 88.0
SEGI_31510 Sequoiadendron giganteum HOM05D004082 ORTHO05D004729 2.2e-87 328.2 202 73.8
QL03p006592 Quercus lobata HOM05D004082 ORTHO05D004729 4.3e-83 313.9 276 57.6
SEGI_00836 Sequoiadendron giganteum HOM05D004082 ORTHO05D004729 9.6e-75 286.2 159 80.5
Lj9A80G18 Lonicera japonica HOM05D004082 ORTHO05D004729 8.1e-74 283.1 214 62.6
CDE05G2291 Ceratophyllum demersum HOM05D004082 ORTHO05D004729 1.0e-68 266.2 156 77.6
Atru.chr1.89 Acer truncatum HOM05D004082 ORTHO05D004729 1.3e-68 265.8 143 83.9
PRCOL_00002375 Prasinoderma coloniale HOM05D004082 ORTHO05D004729 1.3e-60 239.2 635 29.6
QL03p006553 Quercus lobata HOM05D004082 ORTHO05D004729 6.5e-55 220.3 372 39.8
Atru.chr2.403 Acer truncatum HOM05D004082 ORTHO05D004729 4.6e-45 187.6 151 60.3
arahy.Tifrunner.gnm1.ann1.3W7GTE Arachis hypogaea HOM05D004082 ORTHO05D004729 7.9e-45 186.8 94 87.2
Cfa025543 Carpinus fangiana HOM05D004082 ORTHO05D004729 1.3e-42 179.5 816 24.9
CDE05G1624 Ceratophyllum demersum HOM05D004082 ORTHO05D004729 1.2e-40 172.9 92 88.0
Hund21239 Selenicereus undatus HOM05D004082 ORTHO05D004729 1.8e-36 159.1 167 48.5
CAN.G22.21 Capsicum annuum HOM05D004082 ORTHO05D004729 3.0e-36 158.3 150 56.0
SGA_v2.0_scaffold54G19617 Striga asiatica HOM05D004082 ORTHO05D004729 8.2e-34 150.2 150 54.0
Lj9A80T26 Lonicera japonica HOM05D004082 ORTHO05D004729 1.3e-31 142.9 93 72.0
ATR0626G076 Amborella trichopoda HOM05D004082 ORTHO05D004729 2.5e-30 138.7 120 56.7
CAN.G623.34 Capsicum annuum HOM05D004082 ORTHO05D004729 4.4e-27 127.9 89 68.5
QL03p073950 Quercus lobata HOM05D004082 ORTHO05D004729 1.6e-24 119.4 122 54.1
CBR_g49561 Chara braunii HOM05D000019 ORTHO05D000353 2.6e-24 118.6 183 38.3
VMungo1127G1159 Vigna mungo HOM05D004082 ORTHO05D004729 8.8e-20 103.6 184 34.2
SGA_v2.0_scaffold54G19618 Striga asiatica HOM05D004082 ORTHO05D004729 5.7e-19 100.9 121 45.5
CAN.G2092.2 Capsicum annuum HOM05D004082 ORTHO05D004729 1.5e-14 86.3 114 43.9
Hma1.2p1_0928F.1_g237760 Hydrangea macrophylla HOM05D004082 ORTHO05D004729 3.6e-13 81.6 47 80.9
QL03p007034 Quercus lobata HOM05D000125 ORTHO05D000120 3.6e-13 81.6 71 59.2
Hund20275 Selenicereus undatus HOM05D004082 ORTHO05D004729 2.6e-11 75.5 57 57.9
Solyc12g038840.2 Solanum lycopersicum HOM05D004082 ORTHO05D004729 2.2e-10 72.4 76 50.0
SEGI_10811 Sequoiadendron giganteum HOM05D004082 ORTHO05D004729 5.9e-08 64.3 44 65.9
CSS0034197 Camellia sinensis var. sinensis HOM05D000231 ORTHO05D000132 1.0e-07 63.5 70 45.7


User provided reference genes

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