Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR031G3428 Punica granatum HOM05D006035 ORTHO05D007155 4.0e-82 308.1 168 100.0
Thecc.04G302600 Theobroma cacao HOM05D006035 ORTHO05D007155 1.7e-43 179.9 165 58.8
Cfa015301 Carpinus fangiana HOM05D006035 ORTHO05D007155 2.8e-43 179.1 163 59.5
Haze_01313 Corylus avellana HOM05D006035 ORTHO05D007155 1.1e-42 177.2 163 58.9
COL.COLO4_34598 Corchorus olitorius HOM05D006035 ORTHO05D007155 1.8e-42 176.4 165 58.8
CiPaw.01G137000 Carya illinoinensis HOM05D006035 ORTHO05D007155 1.6e-41 173.3 165 58.2
QL06p012626 Quercus lobata HOM05D006035 ORTHO05D007155 1.6e-41 173.3 163 58.3
A09p04840 Brassica napus HOM05D006035 ORTHO05D007155 1.3e-40 170.2 162 57.4
Rhsim04G0240200 Rhododendron simsii HOM05D006035 ORTHO05D007155 1.3e-40 170.2 164 57.3
BraA09t36121Z Brassica rapa HOM05D006035 ORTHO05D007155 2.2e-40 169.5 162 57.4
Duzib151G0686 Durio zibethinus HOM05D006035 ORTHO05D007155 2.9e-40 169.1 164 59.1
Gohir.A10G173200 Gossypium hirsutum HOM05D006035 ORTHO05D007155 3.8e-40 168.7 166 57.8
BcaC04g23738 Brassica carinata HOM05D006035 ORTHO05D007155 5.0e-40 168.3 162 56.8
C09p05220 Brassica napus HOM05D006035 ORTHO05D007155 5.0e-40 168.3 162 56.8
BolC9t53448H Brassica oleracea HOM05D006035 ORTHO05D007155 5.0e-40 168.3 162 56.8
Duzib212G0974 Durio zibethinus HOM05D006035 ORTHO05D007155 6.5e-40 167.9 165 57.0
Gohir.D09G234900 Gossypium hirsutum HOM05D006035 ORTHO05D007155 2.5e-39 166.0 166 58.4
Sabra10G0113300 Salix brachista HOM05D006035 ORTHO05D007155 2.5e-39 166.0 171 55.0
vmacro08029 Vaccinium macrocarpon HOM05D006035 ORTHO05D007155 3.2e-39 165.6 164 56.7
BcaB04g19614 Brassica carinata HOM05D006035 ORTHO05D007155 4.2e-39 165.2 162 56.2
Gohir.A09G234100 Gossypium hirsutum HOM05D006035 ORTHO05D007155 7.2e-39 164.5 166 57.8
Gorai.006G257800 Gossypium raimondii HOM05D006035 ORTHO05D007155 9.4e-39 164.1 166 57.8
MD16G1152300 Malus domestica HOM05D006035 ORTHO05D007155 1.6e-38 163.3 167 55.7
SGA_v2.0_scaffold64G22102 Striga asiatica HOM05D006035 ORTHO05D007155 1.6e-38 163.3 163 53.4
Gorai.011G201000 Gossypium raimondii HOM05D006035 ORTHO05D007155 2.1e-38 162.9 166 56.0
MD13G1151300 Malus domestica HOM05D006035 ORTHO05D007155 2.7e-38 162.5 167 56.3
RcHm_v2.0_Chr4g0425671 Rosa chinensis HOM05D006035 ORTHO05D007155 2.7e-38 162.5 168 53.6
Gohir.D10G179700 Gossypium hirsutum HOM05D006035 ORTHO05D007155 3.6e-38 162.2 166 56.6
Lalb_Chr13g0298531 Lupinus albus HOM05D006035 ORTHO05D007155 4.7e-38 161.8 168 53.0
Potri.008G103900 Populus trichocarpa HOM05D006035 ORTHO05D007155 4.7e-38 161.8 171 53.2
VMungo1215G2980 Vigna mungo HOM05D006035 ORTHO05D007155 6.1e-38 161.4 164 53.0
Atru.chr4.3040 Acer truncatum HOM05D006035 ORTHO05D007155 1.4e-37 160.2 165 54.5
Sed0018605 Sechium edule HOM05D006035 ORTHO05D007155 1.4e-37 160.2 166 53.6
Ciclev10006076m.g Citrus clementina HOM05D006035 ORTHO05D007155 2.3e-37 159.5 167 52.7
Potri.010G146900 Populus trichocarpa HOM05D006035 ORTHO05D007155 6.7e-37 157.9 172 53.5
AL8G23240 Arabidopsis lyrata HOM05D006035 ORTHO05D007155 8.8e-37 157.5 159 53.5
CsaV3_3G015240 Cucumis sativus L. HOM05D006035 ORTHO05D007155 1.5e-36 156.8 165 52.7
Phvul.003G115800 Phaseolus vulgaris HOM05D006035 ORTHO05D007155 7.5e-36 154.5 164 51.8
Duzib052G0321 Durio zibethinus HOM05D006035 ORTHO05D007155 1.3e-35 153.7 164 59.1
PGR004G1138 Punica granatum HOM05D006035 ORTHO05D007155 1.3e-35 153.7 168 52.4
ClCG05G006630 Citrullus lanatus HOM05D006035 ORTHO05D007155 2.2e-35 152.9 165 52.1
MELO3C006721.2 Cucumis melo HOM05D006035 ORTHO05D007155 2.2e-35 152.9 165 52.1
Sp2g19800 Schrenkiella parvula HOM05D006035 ORTHO05D007155 2.2e-35 152.9 166 52.4
SpUn0021_0050 Schrenkiella parvula HOM05D006035 ORTHO05D007155 2.2e-35 152.9 166 52.4
TPR.G25406 Trifolium pratense HOM05D006035 ORTHO05D007155 2.2e-35 152.9 166 48.2
Sabra08G0078500 Salix brachista HOM05D006035 ORTHO05D007155 3.7e-35 152.1 170 50.0
CSS0012943 Camellia sinensis var. sinensis HOM05D006035 ORTHO05D007155 8.2e-35 151.0 168 50.6
CARHR182020 Cardamine hirsuta HOM05D006035 ORTHO05D007155 8.2e-35 151.0 160 54.4
Psat0s4013g0040 Pisum sativum HOM05D006035 ORTHO05D007155 1.1e-34 150.6 165 49.7
Lj1g0017970 Lotus japonicus HOM05D006035 ORTHO05D007155 1.4e-34 150.2 168 50.0
CSS0047932 Camellia sinensis var. sinensis HOM05D006035 ORTHO05D007155 1.8e-34 149.8 168 50.6
Phvul.005G129600 Phaseolus vulgaris HOM05D006035 ORTHO05D007155 1.8e-34 149.8 164 50.0
FvH4_4g19970 Fragaria vesca HOM05D006035 ORTHO05D007155 2.4e-34 149.4 163 52.8
Medtr4g122260 Medicago truncatula HOM05D006035 ORTHO05D007155 2.4e-34 149.4 166 47.6
Glyma.17G034900 Glycine max HOM05D006035 ORTHO05D007155 3.1e-34 149.1 163 50.3
AT5G49480 Arabidopsis thaliana HOM05D006035 ORTHO05D007155 4.1e-34 148.7 159 50.9
Oeu042670.1 Olea europaea HOM05D006035 ORTHO05D007155 4.1e-34 148.7 163 50.9
TWI09G1568 Tripterygium wilfordii HOM05D006035 ORTHO05D007155 4.1e-34 148.7 165 50.9
THA.LOC104818878 Tarenaya hassleriana HOM05D006035 ORTHO05D007155 5.3e-34 148.3 162 53.1
CSS0034436 Camellia sinensis var. sinensis HOM05D006035 ORTHO05D007155 7.0e-34 147.9 171 50.9
Ca_21435_v3 Cicer arietinum L. HOM05D006035 ORTHO05D007155 7.0e-34 147.9 164 48.8
Glyma.07G238700 Glycine max HOM05D006035 ORTHO05D007155 7.0e-34 147.9 163 48.5
CANSAT78G2193 Cannabis sativa HOM05D006035 ORTHO05D007155 1.2e-33 147.1 166 54.2
Hma1.2p1_0013F.1_g008420 Hydrangea macrophylla HOM05D006035 ORTHO05D007155 1.6e-33 146.7 149 52.3
Oeu038775.1 Olea europaea HOM05D006035 ORTHO05D007155 1.6e-33 146.7 162 48.8
Eucgr.H04056 Eucalyptus grandis HOM05D006035 ORTHO05D007155 2.0e-33 146.4 194 45.4
Oeu038777.1 Olea europaea HOM05D006035 ORTHO05D007155 2.0e-33 146.4 161 49.1
Actinidia31554 Actinidia chinensis HOM05D006035 ORTHO05D007155 2.7e-33 146.0 166 57.8
Lalb_Chr07g0182041 Lupinus albus HOM05D006035 ORTHO05D007155 2.7e-33 146.0 165 49.7
SalBow8G4845 Salvia bowleyana HOM05D006035 ORTHO05D007155 2.7e-33 146.0 164 50.6
Aa31LG11G8120 Aethionema arabicum HOM05D006035 ORTHO05D007155 7.7e-33 144.4 160 51.9
Aqoxy2G02699 Aquilegia oxysepala HOM05D006035 ORTHO05D007155 2.9e-32 142.5 149 47.7
Nitab4.5_0000931g0030 Nicotiana tabacum HOM05D006035 ORTHO05D007155 8.5e-32 141.0 168 45.2
DCAR_030462 Daucus carota HOM05D006035 ORTHO05D007155 1.5e-31 140.2 163 51.5
TWI53G1140 Tripterygium wilfordii HOM05D006035 ORTHO05D007155 2.5e-31 139.4 164 47.6
CAN.G97.9 Capsicum annuum HOM05D006035 ORTHO05D007155 5.5e-31 138.3 167 42.5
Lsat_1_v5_gn_1_41620 Lactuca sativa HOM05D006035 ORTHO05D007155 5.5e-31 138.3 163 47.2
Nn3g21749 Nelumbo nucifera HOM05D006035 ORTHO05D007155 5.5e-31 138.3 167 47.9
PSO210G7669 Papaver somniferum HOM05D006035 ORTHO05D007155 5.5e-31 138.3 165 47.9
PSO761G0247 Papaver somniferum HOM05D006035 ORTHO05D007155 1.2e-30 137.1 165 46.7
Rhsim02G0003100 Rhododendron simsii HOM05D006035 ORTHO05D007155 2.1e-30 136.3 163 47.9
CSS0043064 Camellia sinensis var. sinensis HOM05D006035 ORTHO05D007155 2.7e-30 136.0 162 48.8
Sopen01g024580 Solanum pennellii HOM05D006035 ORTHO05D007155 3.6e-30 135.6 165 43.0
PGSC0003DMG400001204 Solanum tuberosum HOM05D006035 ORTHO05D007155 4.7e-30 135.2 165 42.4
EL10Ac3g05523 Beta vulgaris HOM05D006035 ORTHO05D007155 8.0e-30 134.4 167 49.1
ECA246G4755 Erigeron canadensis HOM05D006035 ORTHO05D007155 8.0e-30 134.4 162 46.3
Migut.G00072 Erythranthe guttata HOM05D006035 ORTHO05D007155 8.0e-30 134.4 146 51.4
Cc03_g00700 Coffea canephora HOM05D006035 ORTHO05D007155 1.0e-29 134.0 176 43.2
Nitab4.5_0000655g0030 Nicotiana tabacum HOM05D006035 ORTHO05D007155 1.0e-29 134.0 161 45.3
TAR633G1133 Trochodendron aralioides HOM05D006035 ORTHO05D007155 1.0e-29 134.0 163 52.1
vmacro15178 Vaccinium macrocarpon HOM05D006035 ORTHO05D007155 1.8e-29 133.3 163 47.9
Sc19g0003080 Simmondsia chinensis HOM05D006035 ORTHO05D007155 2.3e-29 132.9 162 43.8
FAN07G1803 Fragaria x ananassa HOM05D006035 ORTHO05D007155 3.0e-29 132.5 169 48.5
HPP92_008930 Vanilla planifolia HOM05D006035 ORTHO05D007155 4.0e-29 132.1 163 46.6
Manes.03G205900 Manihot esculenta HOM05D006035 ORTHO05D007155 6.8e-29 131.3 149 44.3
Ah.13g071330 Amaranthus hybridus HOM05D006035 ORTHO05D007155 8.8e-29 131.0 162 46.9
HanXRQChr11g0353881 Helianthus annuus HOM05D006035 ORTHO05D007155 3.4e-28 129.0 163 43.6
AUR62039264 Chenopodium quinoa HOM05D006035 ORTHO05D007155 1.7e-27 126.7 165 46.7
HanXRQChr05g0146001 Helianthus annuus HOM05D006035 ORTHO05D007155 2.2e-27 126.3 163 44.8
Lsat_1_v5_gn_6_116540 Lactuca sativa HOM05D006035 ORTHO05D007155 1.1e-26 124.0 163 44.2
MSTRG.10157 Avicennia marina HOM05D006035 ORTHO05D007155 1.4e-26 123.6 163 51.5
Dinv44276 Davidia involucrata HOM05D006035 ORTHO05D007155 9.1e-26 120.9 162 43.8
unitig_32.g11850 Utricularia gibba HOM05D006035 ORTHO05D007155 4.5e-25 118.6 170 42.9
AUR62016225 Chenopodium quinoa HOM05D006035 ORTHO05D007155 7.7e-25 117.9 150 46.7
Lsat_1_v5_gn_6_116560 Lactuca sativa HOM05D006035 ORTHO05D007155 2.9e-24 115.9 163 42.3
Solyc01g058720.4 Solanum lycopersicum HOM05D006035 ORTHO05D007155 1.1e-23 114.0 149 41.6
Peaxi162Scf00228g00041 Petunia axillaris HOM05D006035 ORTHO05D007155 2.5e-23 112.8 140 45.7
ATR0693G356 Amborella trichopoda HOM05D006035 ORTHO05D007155 1.0e-21 107.5 163 42.9
Oeu038773.1 Olea europaea HOM05D006035 ORTHO05D007155 1.4e-21 107.1 196 36.2
HPP92_005426 Vanilla planifolia HOM05D006035 ORTHO05D007155 1.2e-20 104.0 153 41.2
Lj6P692T31 Lonicera japonica HOM05D006035 ORTHO05D007155 2.6e-20 102.8 102 52.9
MD04G1036600 Malus domestica HOM05D006035 ORTHO05D007155 2.6e-20 102.8 105 53.3
Manes.15G000900 Manihot esculenta HOM05D006035 ORTHO05D007155 3.4e-20 102.4 164 43.3
GSVIVG01034916001 Vitis vinifera HOM05D006035 ORTHO05D007155 1.6e-17 93.6 74 58.1
CDE08G1648 Ceratophyllum demersum HOM05D006035 ORTHO05D007155 2.0e-17 93.2 129 45.0
CSS0018156 Camellia sinensis var. sinensis HOM05D006035 ORTHO05D007155 2.7e-17 92.8 162 42.6
Cpa.g.sc9.45 Carica papaya HOM05D006035 ORTHO05D007155 2.3e-16 89.7 163 42.9
Prupe.1G115600 Prunus persica HOM05D006035 ORTHO05D007155 3.6e-14 82.4 168 40.5
Ciclev10006337m.g Citrus clementina HOM05D006035 ORTHO05D007155 8.0e-14 81.3 53 71.7
Zm00001eb395970 Zea mays HOM05D006035 ORTHO05D007155 8.0e-14 81.3 131 42.0
Carub.0008s0934 Capsella rubella HOM05D006035 ORTHO05D007155 1.4e-13 80.5 165 41.2
SEGI_01581 Sequoiadendron giganteum HOM05D006035 ORTHO05D007155 1.4e-13 80.5 161 31.1
SEGI_08802 Sequoiadendron giganteum HOM05D006035 ORTHO05D007155 1.2e-12 77.4 160 31.2
TAR362G0119 Trochodendron aralioides HOM05D006035 ORTHO05D007155 2.0e-12 76.6 163 41.7
Oeu038774.1 Olea europaea HOM05D006035 ORTHO05D007155 4.4e-12 75.5 164 34.8
Pp3c16_2040 Physcomitrium patens HOM05D006035 ORTHO05D007155 7.5e-12 74.7 148 30.4
SEGI_03909 Sequoiadendron giganteum HOM05D006035 ORTHO05D007155 5.4e-10 68.6 157 31.8
Pp3c25_1480 Physcomitrium patens HOM05D000227 ORTHO05D007155 4.6e-09 65.5 146 28.8
Potri.005G052800 Populus trichocarpa HOM05D000227 ORTHO05D000451 8.6e-08 61.2 145 28.3
FvH4_7g20700 Fragaria vesca HOM05D000227 ORTHO05D000451 1.5e-07 60.5 145 28.3
CBR_g28479 Chara braunii HOM05D000227 ORTHO05D007155 2.5e-07 59.7 143 25.2
FAN01G2463 Fragaria x ananassa HOM05D000227 ORTHO05D000451 2.5e-07 59.7 150 27.3
FAN01G2988 Fragaria x ananassa HOM05D000227 ORTHO05D000451 2.5e-07 59.7 150 27.3
FAN06G4215 Fragaria x ananassa HOM05D000122 ORTHO05D017956 3.3e-07 59.3 144 28.5
HPP92_001701 Vanilla planifolia HOM05D000227 ORTHO05D000451 3.3e-07 59.3 145 28.3
CSS0036108 Camellia sinensis var. sinensis HOM05D000227 ORTHO05D000451 4.3e-07 58.9 146 26.0
CBR_g28477 Chara braunii HOM05D000227 ORTHO05D000451 4.3e-07 58.9 143 25.2
HanXRQChr05g0134471 Helianthus annuus HOM05D000227 ORTHO05D000451 4.3e-07 58.9 145 29.0
Manes.09G153600 Manihot esculenta HOM05D000227 ORTHO05D000451 4.3e-07 58.9 144 27.1
RcHm_v2.0_Chr1g0364931 Rosa chinensis HOM05D000227 ORTHO05D000451 5.6e-07 58.5 145 26.9
Medtr7g115040 Medicago truncatula HOM05D000227 ORTHO05D000451 7.3e-07 58.2 142 25.4
Os03g0310800 Oryza sativa ssp. japonica HOM05D006035 ORTHO05D007155 7.3e-07 58.2 110 39.1
QL06p006093 Quercus lobata HOM05D001729 ORTHO05D001155 1.2e-06 57.4 52 57.7
CAN.G638.86 Capsicum annuum HOM05D000227 ORTHO05D000451 1.6e-06 57.0 144 26.4
Glyma.19G244300 Glycine max HOM05D000227 ORTHO05D000451 2.1e-06 56.6 145 24.8
Os12g0603800 Oryza sativa ssp. japonica HOM05D000227 ORTHO05D000451 2.1e-06 56.6 154 25.3
EL10Ac2g04468 Beta vulgaris HOM05D000135 ORTHO05D000203 2.8e-06 56.2 147 29.9
CSS0037530 Camellia sinensis var. sinensis HOM05D000227 ORTHO05D000451 2.8e-06 56.2 144 25.7
CSS0041234 Camellia sinensis var. sinensis HOM05D000227 ORTHO05D000451 2.8e-06 56.2 144 25.7
Atru.chr2.808 Acer truncatum HOM05D000227 ORTHO05D000451 3.6e-06 55.8 142 26.8
CARHR195730 Cardamine hirsuta HOM05D000135 ORTHO05D000203 4.7e-06 55.5 142 28.9
Thhalv10014926m.g Eutrema salsugineum HOM05D000227 ORTHO05D000451 6.2e-06 55.1 145 28.3
Glyma.02G143800 Glycine max HOM05D000227 ORTHO05D000451 8.0e-06 54.7 145 27.6
Glyma.03G246800 Glycine max HOM05D000227 ORTHO05D000451 8.0e-06 54.7 142 25.4
Nitab4.5_0002724g0060 Nicotiana tabacum HOM05D000227 ORTHO05D000451 8.0e-06 54.7 147 26.5
SMO169G0076 Selaginella moellendorffii HOM05D000227 ORTHO05D000451 8.0e-06 54.7 145 26.2


User provided reference genes

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