Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR031G3332 Punica granatum HOM05D007216 ORTHO05D009261 1.1e-131 473.4 247 100.0
Eucgr.H00196 Eucalyptus grandis HOM05D007216 ORTHO05D009261 2.5e-48 196.4 251 47.8
QL06p015626 Quercus lobata HOM05D007216 ORTHO05D009261 2.6e-45 186.4 247 44.1
Eucgr.J01563 Eucalyptus grandis HOM05D007216 ORTHO05D009261 4.4e-45 185.7 179 55.9
MD13G1206900 Malus domestica HOM05D007216 ORTHO05D009261 3.2e-43 179.5 230 46.1
Actinidia08446 Actinidia chinensis HOM05D007216 ORTHO05D009261 4.2e-43 179.1 184 52.7
Prupe.1G030500 Prunus persica HOM05D007216 ORTHO05D009261 4.2e-43 179.1 190 53.2
Duzib151G0820 Durio zibethinus HOM05D007216 ORTHO05D009261 7.8e-42 174.9 231 46.3
COL.COLO4_15786 Corchorus olitorius HOM05D007216 ORTHO05D009261 1.0e-41 174.5 241 41.9
Duzib151G0028 Durio zibethinus HOM05D007216 ORTHO05D009261 1.3e-41 174.1 231 46.3
CiPaw.01G190600 Carya illinoinensis HOM05D007216 ORTHO05D009261 2.3e-41 173.3 244 43.4
Actinidia05467 Actinidia chinensis HOM05D007216 ORTHO05D009261 3.9e-41 172.6 230 46.5
Haze_11299 Corylus avellana HOM05D007216 ORTHO05D009261 5.1e-41 172.2 242 46.3
Thecc.04G245800 Theobroma cacao HOM05D007216 ORTHO05D009261 5.1e-41 172.2 223 44.4
Haze_11297 Corylus avellana HOM05D007216 ORTHO05D009261 8.7e-41 171.4 242 45.9
MD16G1208400 Malus domestica HOM05D007216 ORTHO05D009261 1.3e-39 167.5 230 44.3
RcHm_v2.0_Chr4g0390311 Rosa chinensis HOM05D007216 ORTHO05D009261 3.6e-39 166.0 238 43.7
Cfa008380 Carpinus fangiana HOM05D007216 ORTHO05D009261 8.1e-39 164.9 222 42.8
Duzib052G0756 Durio zibethinus HOM05D007216 ORTHO05D009261 1.4e-38 164.1 224 43.3
Rhsim02G0032900 Rhododendron simsii HOM05D007216 ORTHO05D009261 1.8e-38 163.7 199 47.2
Solyc09g083360.3 Solanum lycopersicum HOM05D007216 ORTHO05D009261 5.3e-38 162.2 179 46.9
Sopen09g032280 Solanum pennellii HOM05D007216 ORTHO05D009261 5.3e-38 162.2 177 46.9
TAR365G0907 Trochodendron aralioides HOM05D007216 ORTHO05D009261 5.3e-38 162.2 233 43.3
CSS0019068 Camellia sinensis var. sinensis HOM05D007216 ORTHO05D009261 1.5e-37 160.6 179 46.4
CiPaw.02G116600 Carya illinoinensis HOM05D007216 ORTHO05D009261 2.6e-37 159.8 235 45.1
Cpa.g.sc58.45 Carica papaya HOM05D007216 ORTHO05D009261 6.4e-36 155.2 208 42.3
Duzib212G0514 Durio zibethinus HOM05D007216 ORTHO05D009261 1.1e-35 154.5 202 44.1
QL06p015621 Quercus lobata HOM05D007216 ORTHO05D009261 1.9e-35 153.7 224 41.1
Potri.008G161800 Populus trichocarpa HOM05D007216 ORTHO05D009261 2.4e-35 153.3 200 42.5
FvH4_4g02610 Fragaria vesca HOM05D007216 ORTHO05D009261 3.2e-35 152.9 217 44.2
Nn3g19525 Nelumbo nucifera HOM05D007216 ORTHO05D009261 3.2e-35 152.9 212 44.3
Ciclev10005777m.g Citrus clementina HOM05D007216 ORTHO05D009261 4.2e-35 152.5 224 42.4
Gohir.A09G222900 Gossypium hirsutum HOM05D007216 ORTHO05D009261 4.2e-35 152.5 206 41.3
Gorai.006G246400 Gossypium raimondii HOM05D007216 ORTHO05D009261 5.4e-35 152.1 218 40.4
Nn1g02593 Nelumbo nucifera HOM05D007216 ORTHO05D009261 4.6e-34 149.1 205 45.9
Atru.chr4.2233 Acer truncatum HOM05D007216 ORTHO05D009261 1.7e-33 147.1 245 40.4
Manes.03G169100 Manihot esculenta HOM05D007216 ORTHO05D009261 1.7e-33 147.1 239 37.7
Potri.010G077000 Populus trichocarpa HOM05D007216 ORTHO05D009261 3.0e-33 146.4 233 39.5
Peaxi162Scf00813g00118 Petunia axillaris HOM05D007216 ORTHO05D009261 8.7e-33 144.8 179 44.1
Sabra10G0031800 Salix brachista HOM05D007216 ORTHO05D009261 8.7e-33 144.8 235 37.4
GSVIVG01018111001 Vitis vinifera HOM05D007216 ORTHO05D009261 1.5e-32 144.1 173 48.0
Cc03_g04820 Coffea canephora HOM05D007216 ORTHO05D009261 3.3e-32 142.9 208 42.3
Gohir.D09G224900 Gossypium hirsutum HOM05D007216 ORTHO05D009261 4.3e-32 142.5 178 43.8
BraA09t37658Z Brassica rapa HOM05D007216 ORTHO05D009261 5.6e-32 142.1 199 40.7
BcaC04g21907 Brassica carinata HOM05D007216 ORTHO05D009261 7.3e-32 141.7 199 40.7
Glyma.02G000800 Glycine max HOM05D007216 ORTHO05D009261 2.1e-31 140.2 217 42.9
ATR0665G548 Amborella trichopoda HOM05D007216 ORTHO05D009261 1.1e-30 137.9 202 40.1
FAN12G1817 Fragaria x ananassa HOM05D007216 ORTHO05D009261 1.1e-30 137.9 198 43.4
Dinv29914 Davidia involucrata HOM05D007216 ORTHO05D009261 1.8e-30 137.1 148 49.3
TWI09G1088 Tripterygium wilfordii HOM05D007216 ORTHO05D009261 3.1e-30 136.3 222 38.7
Aa31LG5G3580 Aethionema arabicum HOM05D007216 ORTHO05D009261 4.0e-30 136.0 199 39.2
THA.LOC104827376 Tarenaya hassleriana HOM05D007216 ORTHO05D009261 6.9e-30 135.2 205 40.5
BcaC06g31685 Brassica carinata HOM05D007216 ORTHO05D009261 1.2e-29 134.4 239 35.6
A09p20520 Brassica napus HOM05D007216 ORTHO05D009261 1.5e-29 134.0 206 40.3
Sabra08G0123600 Salix brachista HOM05D007216 ORTHO05D009261 1.5e-29 134.0 190 42.1
BcaC06g34638 Brassica carinata HOM05D007216 ORTHO05D009261 2.6e-29 133.3 239 35.6
C07p26230 Brassica napus HOM05D007216 ORTHO05D009261 2.6e-29 133.3 239 35.6
BolC7t43151H Brassica oleracea HOM05D007216 ORTHO05D009261 2.6e-29 133.3 239 35.6
CANSAT78G2280 Cannabis sativa HOM05D007216 ORTHO05D009261 2.6e-29 133.3 249 40.2
MSTRG.4097 Avicennia marina HOM05D007216 ORTHO05D009261 4.5e-29 132.5 250 38.8
TWI73G0753 Tripterygium wilfordii HOM05D007216 ORTHO05D009261 1.3e-28 131.0 229 37.6
Thhalv10003353m.g Eutrema salsugineum HOM05D007216 ORTHO05D009261 1.7e-28 130.6 180 41.1
CsaV3_2G013060 Cucumis sativus L. HOM05D007216 ORTHO05D009261 2.9e-28 129.8 184 42.4
Medtr1g040435 Medicago truncatula HOM05D007216 ORTHO05D009261 3.8e-28 129.4 244 37.3
A06p47770 Brassica napus HOM05D007216 ORTHO05D009261 4.9e-28 129.0 239 35.1
BolC9t55498H Brassica oleracea HOM05D007216 ORTHO05D009261 4.9e-28 129.0 200 39.5
TAR636G2640 Trochodendron aralioides HOM05D007216 ORTHO05D009261 4.9e-28 129.0 212 39.2
C09p25930 Brassica napus HOM05D007216 ORTHO05D009261 6.4e-28 128.6 178 41.0
Oeu008788.2 Olea europaea HOM05D007216 ORTHO05D009261 6.4e-28 128.6 218 39.0
Sed0021571 Sechium edule HOM05D007216 ORTHO05D009261 6.4e-28 128.6 242 36.0
Gohir.D02G042400 Gossypium hirsutum HOM05D007216 ORTHO05D009261 1.4e-27 127.5 233 39.5
BcaB07g31004 Brassica carinata HOM05D007216 ORTHO05D009261 1.9e-27 127.1 199 37.7
Gorai.005G046700 Gossypium raimondii HOM05D007216 ORTHO05D009261 2.4e-27 126.7 233 39.1
DCAR_027275 Daucus carota HOM05D007216 ORTHO05D009261 4.2e-27 125.9 207 38.2
AL390U10010 Arabidopsis lyrata HOM05D007216 ORTHO05D009261 9.3e-27 124.8 239 36.0
ClCG06G006720 Citrullus lanatus HOM05D007216 ORTHO05D009261 1.2e-26 124.4 246 38.2
Sed0000846 Sechium edule HOM05D007216 ORTHO05D009261 1.6e-26 124.0 234 36.3
THA.LOC104801097 Tarenaya hassleriana HOM05D007216 ORTHO05D009261 3.5e-26 122.9 207 38.2
SpUn0744_0010 Schrenkiella parvula HOM05D007216 ORTHO05D009261 4.6e-26 122.5 223 35.0
Gohir.A02G035500 Gossypium hirsutum HOM05D007216 ORTHO05D009261 6.0e-26 122.1 181 43.1
TPR.G22479 Trifolium pratense HOM05D007216 ORTHO05D009261 7.9e-26 121.7 251 37.5
CARHR006300 Cardamine hirsuta HOM05D007216 ORTHO05D009261 1.8e-25 120.6 204 36.3
Migut.G00433 Erythranthe guttata HOM05D007216 ORTHO05D009261 3.9e-25 119.4 233 36.9
Psat6g102240 Pisum sativum HOM05D007216 ORTHO05D009261 3.9e-25 119.4 249 35.3
Sed0019243 Sechium edule HOM05D007216 ORTHO05D009261 5.1e-25 119.0 227 37.9
Sc13g0004990 Simmondsia chinensis HOM05D007216 ORTHO05D009261 6.7e-25 118.6 200 42.0
MELO3C026778.2 Cucumis melo HOM05D007216 ORTHO05D009261 1.5e-24 117.5 250 35.6
Nitab4.5_0004798g0070 Nicotiana tabacum HOM05D007216 ORTHO05D009261 1.5e-24 117.5 245 34.3
DCAR_027276 Daucus carota HOM05D007216 ORTHO05D009261 5.6e-24 115.5 225 34.2
Phvul.007G280700 Phaseolus vulgaris HOM05D007216 ORTHO05D009261 5.6e-24 115.5 151 45.0
BraA06t27645Z Brassica rapa HOM05D007216 ORTHO05D009261 1.3e-23 114.4 218 34.4
AT5G43650 Arabidopsis thaliana HOM05D007216 ORTHO05D009261 4.8e-23 112.5 159 41.5
Lalb_Chr03g0037861 Lupinus albus HOM05D007216 ORTHO05D009261 8.1e-23 111.7 232 36.6
Carub.0008s0499 Capsella rubella HOM05D007216 ORTHO05D009261 6.9e-22 108.6 204 36.3
Hma1.2p1_0893F.1_g233480 Hydrangea macrophylla HOM05D007216 ORTHO05D009261 1.7e-20 104.0 106 50.0
CAN.G1007.15 Capsicum annuum HOM05D007216 ORTHO05D009261 2.9e-20 103.2 167 40.7
Dinv44631 Davidia involucrata HOM05D007216 ORTHO05D009261 4.6e-18 95.9 111 45.0
Nitab4.5_0000525g0160 Nicotiana tabacum HOM05D007216 ORTHO05D009261 1.3e-17 94.4 245 29.8
HPP92_023468 Vanilla planifolia HOM05D007216 ORTHO05D009261 1.5e-16 90.9 228 31.1
Zm00001eb056760 Zea mays HOM05D007216 ORTHO05D009261 3.3e-16 89.7 162 34.6
HPP92_023463 Vanilla planifolia HOM05D007216 ORTHO05D009261 2.8e-15 86.7 228 30.7
Lj6C656T7 Lonicera japonica HOM05D007216 ORTHO05D009261 4.8e-15 85.9 220 32.7
Os03g0741100 Oryza sativa ssp. japonica HOM05D007216 ORTHO05D009261 4.8e-15 85.9 156 31.4
Aqoxy5G00327 Aquilegia oxysepala HOM05D007216 ORTHO05D009261 8.2e-15 85.1 138 39.9
SpUn0429_0010 Schrenkiella parvula HOM05D007216 ORTHO05D009261 2.0e-13 80.5 217 28.1
HPP92_027840 Vanilla planifolia HOM05D007216 ORTHO05D009261 2.9e-12 76.6 237 29.1
Sp6g18670 Schrenkiella parvula HOM05D004059 ORTHO05D004591 1.3e-09 67.8 83 48.2
AT5G56960 Arabidopsis thaliana HOM05D004059 ORTHO05D004591 1.9e-08 63.9 178 32.0
CAN.G52.7 Capsicum annuum HOM05D004059 ORTHO05D004591 1.9e-08 63.9 153 33.3
Gohir.D07G011700 Gossypium hirsutum HOM05D004059 ORTHO05D004591 3.3e-08 63.2 151 34.4
Gorai.001G012400 Gossypium raimondii HOM05D004059 ORTHO05D004591 3.3e-08 63.2 151 34.4
QL02p062365 Quercus lobata HOM05D004059 ORTHO05D004591 3.3e-08 63.2 141 36.2
COL.COLO4_18190 Corchorus olitorius HOM05D004059 ORTHO05D004591 4.3e-08 62.8 111 41.4
Lj7A677T52 Lonicera japonica HOM05D004059 ORTHO05D004591 4.3e-08 62.8 131 35.9
PGR102G2684 Punica granatum HOM05D004059 ORTHO05D004591 4.3e-08 62.8 128 35.2
Carub.0008s1744 Capsella rubella HOM05D004059 ORTHO05D004591 5.7e-08 62.4 176 31.8
Duzib187G0197 Durio zibethinus HOM05D004059 ORTHO05D004591 7.4e-08 62.0 125 39.2
PGSC0003DMG400022043 Solanum tuberosum HOM05D004059 ORTHO05D004591 7.4e-08 62.0 151 35.1
THA.LOC104811746 Tarenaya hassleriana HOM05D004059 ORTHO05D004591 7.4e-08 62.0 211 32.2
Thecc.09G087400 Theobroma cacao HOM05D004059 ORTHO05D004591 7.4e-08 62.0 123 38.2
BcaC03g14194 Brassica carinata HOM05D004059 ORTHO05D004591 9.7e-08 61.6 83 45.8
C02p14760 Brassica napus HOM05D004059 ORTHO05D004591 9.7e-08 61.6 83 45.8
BolC2t07605H Brassica oleracea HOM05D004059 ORTHO05D004591 9.7e-08 61.6 83 45.8
A02p08850 Brassica napus HOM05D004059 ORTHO05D004591 1.6e-07 60.8 83 44.6
Gohir.A07G011900 Gossypium hirsutum HOM05D004059 ORTHO05D004591 1.6e-07 60.8 151 33.8
Potri.006G148800 Populus trichocarpa HOM05D004059 ORTHO05D004591 1.6e-07 60.8 165 35.8
CARHR270700 Cardamine hirsuta HOM05D004059 ORTHO05D004591 2.2e-07 60.5 83 44.6
FAN19G2456 Fragaria x ananassa HOM05D004059 ORTHO05D004591 2.8e-07 60.1 63 52.4
BcaB05g22300 Brassica carinata HOM05D004059 ORTHO05D004591 3.7e-07 59.7 83 43.4
BcaB08g36035 Brassica carinata HOM05D004059 ORTHO05D004591 3.7e-07 59.7 178 32.6
Rhsim05G0018600 Rhododendron simsii HOM05D004059 ORTHO05D004591 3.7e-07 59.7 133 34.6
AL8G32820 Arabidopsis lyrata HOM05D004059 ORTHO05D004591 4.8e-07 59.3 175 32.6
CANSAT56G2242 Cannabis sativa HOM05D004059 ORTHO05D004591 4.8e-07 59.3 63 49.2
Nitab4.5_0002593g0060 Nicotiana tabacum HOM05D004059 ORTHO05D004591 4.8e-07 59.3 104 37.5
FvH4_1g07710 Fragaria vesca HOM05D004059 ORTHO05D004591 8.2e-07 58.5 62 51.6
Nn8g38830 Nelumbo nucifera HOM05D004059 ORTHO05D004591 8.2e-07 58.5 123 37.4
RcHm_v2.0_Chr2g0093571 Rosa chinensis HOM05D004059 ORTHO05D004591 8.2e-07 58.5 67 47.8
Hund25946 Selenicereus undatus HOM05D004059 ORTHO05D004591 8.2e-07 58.5 124 39.5
vmacro06298 Vaccinium macrocarpon HOM05D004059 ORTHO05D004591 8.2e-07 58.5 128 34.4
Actinidia29906 Actinidia chinensis HOM05D004059 ORTHO05D004591 1.1e-06 58.2 169 33.7
BcaC04g20035 Brassica carinata HOM05D004059 ORTHO05D004591 1.1e-06 58.2 83 45.8
C09p48620 Brassica napus HOM05D004059 ORTHO05D004591 1.1e-06 58.2 83 45.8
BraA02t05954Z Brassica rapa HOM05D004059 ORTHO05D004591 1.1e-06 58.2 63 52.4
CSS0005796 Camellia sinensis var. sinensis HOM05D004059 ORTHO05D004591 1.1e-06 58.2 145 37.2
AUR62029052 Chenopodium quinoa HOM05D004059 ORTHO05D004591 1.4e-06 57.8 88 40.9
Cc06_g11520 Coffea canephora HOM05D004059 ORTHO05D004591 1.4e-06 57.8 144 33.3
Haze_25925 Corylus avellana HOM05D004059 ORTHO05D004591 1.8e-06 57.4 61 50.8
CsaV3_1G040580 Cucumis sativus L. HOM05D004059 ORTHO05D004591 1.8e-06 57.4 137 34.3
Lalb_Chr08g0232291 Lupinus albus HOM05D004059 ORTHO05D004591 1.8e-06 57.4 154 35.7
Duzib168G0233 Durio zibethinus HOM05D004059 ORTHO05D004591 2.4e-06 57.0 147 33.3
FAN23G2659 Fragaria x ananassa HOM05D004059 ORTHO05D004591 2.4e-06 57.0 62 50.0
FAN26G1668 Fragaria x ananassa HOM05D004059 ORTHO05D004591 2.4e-06 57.0 62 50.0
FAN26G3139 Fragaria x ananassa HOM05D004059 ORTHO05D004591 2.4e-06 57.0 62 50.0
FAN28G1400 Fragaria x ananassa HOM05D004059 ORTHO05D004591 2.4e-06 57.0 62 50.0
Lalb_Chr11g0074551 Lupinus albus HOM05D004059 ORTHO05D004591 2.4e-06 57.0 146 36.3
MD02G1081600 Malus domestica HOM05D004059 ORTHO05D004591 2.4e-06 57.0 123 35.8
MD15G1208900 Malus domestica HOM05D004059 ORTHO05D004591 2.4e-06 57.0 125 36.0
Sopen07g018910 Solanum pennellii HOM05D004059 ORTHO05D004591 2.4e-06 57.0 103 37.9
Phvul.009G231600 Phaseolus vulgaris HOM05D004059 ORTHO05D004591 3.1e-06 56.6 63 50.8
Gohir.A05G030300 Gossypium hirsutum HOM05D004059 ORTHO05D004591 4.1e-06 56.2 261 26.4
Prupe.7G207500 Prunus persica HOM05D004059 ORTHO05D004591 4.1e-06 56.2 130 36.2
CAN.G1583.1 Capsicum annuum HOM05D000597 ORTHO05D004591 5.3e-06 55.8 82 43.9
Cfa003070 Carpinus fangiana HOM05D004059 ORTHO05D004591 5.3e-06 55.8 72 47.2
ClCG03G015470 Citrullus lanatus HOM05D004059 ORTHO05D004591 5.3e-06 55.8 164 34.1
Peaxi162Scf00028g00036 Petunia axillaris HOM05D004059 ORTHO05D004591 5.3e-06 55.8 99 38.4
THA.LOC104818114 Tarenaya hassleriana HOM05D004059 ORTHO05D004591 5.3e-06 55.8 143 35.0
vmacro17254 Vaccinium macrocarpon HOM05D004059 ORTHO05D004591 5.3e-06 55.8 70 44.3
CiPaw.04G148500 Carya illinoinensis HOM05D004059 ORTHO05D004591 6.9e-06 55.5 122 36.1
AUR62033947 Chenopodium quinoa HOM05D004059 ORTHO05D004591 6.9e-06 55.5 140 36.4
Dinv36776 Davidia involucrata HOM05D004059 ORTHO05D004591 6.9e-06 55.5 230 30.0
HanXRQChr03g0060341 Helianthus annuus HOM05D004059 ORTHO05D004591 6.9e-06 55.5 147 34.0
Medtr2g039620 Medicago truncatula HOM05D004059 ORTHO05D004591 6.9e-06 55.5 71 45.1
Aa31LG3G12850 Aethionema arabicum HOM05D004059 ORTHO05D004591 9.0e-06 55.1 174 28.2
CiPaw.03G214200 Carya illinoinensis HOM05D004059 ORTHO05D004591 9.0e-06 55.1 171 33.9
Glyma.15G170500 Glycine max HOM05D004059 ORTHO05D004591 9.0e-06 55.1 138 34.1
Lj4C294T9 Lonicera japonica HOM05D004059 ORTHO05D004591 9.0e-06 55.1 121 36.4
Nitab4.5_0006053g0020 Nicotiana tabacum HOM05D004059 ORTHO05D004591 9.0e-06 55.1 104 36.5
TPR.G13416 Trifolium pratense HOM05D004059 ORTHO05D004591 9.0e-06 55.1 71 45.1


User provided reference genes

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