Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR031G3052 Punica granatum HOM05D005944 ORTHO05D007188 7.7e-146 520.4 249 100.0
QL12p041319 Quercus lobata HOM05D005944 ORTHO05D007188 1.4e-78 297.0 247 61.5
Cfa013369 Carpinus fangiana HOM05D005944 ORTHO05D007188 1.3e-76 290.4 247 59.1
Hma1.2p1_0049F.1_g028530 Hydrangea macrophylla HOM05D005944 ORTHO05D007188 1.3e-76 290.4 236 61.0
CSS0001771 Camellia sinensis var. sinensis HOM05D005944 ORTHO05D007188 1.7e-76 290.0 238 60.9
Haze_21893 Corylus avellana HOM05D005944 ORTHO05D007188 6.4e-76 288.1 243 58.8
CiPaw.08G026000 Carya illinoinensis HOM05D005944 ORTHO05D007188 5.4e-75 285.0 244 60.2
TAR626G0255 Trochodendron aralioides HOM05D005944 ORTHO05D007188 1.2e-74 283.9 249 58.2
Eucgr.C00599 Eucalyptus grandis HOM05D005944 ORTHO05D007188 2.1e-74 283.1 262 56.5
Rhsim07G0147000 Rhododendron simsii HOM05D005944 ORTHO05D007188 4.6e-74 282.0 247 57.5
Manes.16G075200 Manihot esculenta HOM05D005944 ORTHO05D007188 1.3e-73 280.4 234 59.4
Phvul.009G110100 Phaseolus vulgaris HOM05D005944 ORTHO05D007188 1.7e-73 280.0 243 56.4
CiPaw.07G203800 Carya illinoinensis HOM05D005944 ORTHO05D007188 5.1e-73 278.5 250 58.8
VMungo1309G1803 Vigna mungo HOM05D005944 ORTHO05D007188 1.1e-72 277.3 235 56.6
MD08G1113400 Malus domestica HOM05D005944 ORTHO05D007188 1.5e-72 276.9 250 58.0
Potri.006G238000 Populus trichocarpa HOM05D005944 ORTHO05D007188 2.5e-72 276.2 243 57.2
TWI34G0404 Tripterygium wilfordii HOM05D005944 ORTHO05D007188 5.6e-72 275.0 227 62.1
Glyma.06G086100 Glycine max HOM05D005944 ORTHO05D007188 2.1e-71 273.1 237 57.4
TPR.G15103 Trifolium pratense HOM05D005944 ORTHO05D007188 3.6e-71 272.3 239 56.5
Cc08_g09670 Coffea canephora HOM05D005944 ORTHO05D007188 4.7e-71 271.9 240 55.8
Sc09g0009310 Simmondsia chinensis HOM05D005944 ORTHO05D007188 4.7e-71 271.9 248 56.5
Thecc.09G045700 Theobroma cacao HOM05D005944 ORTHO05D007188 4.7e-71 271.9 236 57.6
Cpa.g.sc78.4 Carica papaya HOM05D005944 ORTHO05D007188 6.2e-71 271.6 249 55.8
Duzib168G0738 Durio zibethinus HOM05D005944 ORTHO05D007188 6.2e-71 271.6 247 56.3
Psat5g021160 Pisum sativum HOM05D005944 ORTHO05D007188 1.1e-70 270.8 236 57.2
Lalb_Chr11g0064511 Lupinus albus HOM05D005944 ORTHO05D007188 1.4e-70 270.4 236 55.5
Prupe.1G447700 Prunus persica HOM05D005944 ORTHO05D007188 1.8e-70 270.0 252 55.6
Ciclev10009275m.g Citrus clementina HOM05D005944 ORTHO05D007188 4.0e-70 268.9 260 53.1
Ca_15588_v3 Cicer arietinum L. HOM05D005944 ORTHO05D007188 5.2e-70 268.5 245 55.9
MELO3C011137.2 Cucumis melo HOM05D005944 ORTHO05D007188 5.2e-70 268.5 248 53.6
TWI63G0268 Tripterygium wilfordii HOM05D005944 ORTHO05D007188 9.0e-70 267.7 233 60.1
Nn8g39119 Nelumbo nucifera HOM05D005944 ORTHO05D007188 1.2e-69 267.3 251 55.8
Ah.10g034990 Amaranthus hybridus HOM05D005944 ORTHO05D007188 9.9e-69 264.2 245 54.3
Gohir.A06G092600 Gossypium hirsutum HOM05D005944 ORTHO05D007188 9.9e-69 264.2 227 57.7
Gohir.D06G092200 Gossypium hirsutum HOM05D005944 ORTHO05D007188 1.3e-68 263.8 212 59.9
MD15G1092800 Malus domestica HOM05D005944 ORTHO05D007188 1.3e-68 263.8 252 56.0
vmacro23277 Vaccinium macrocarpon HOM05D005944 ORTHO05D007188 2.2e-68 263.1 245 56.7
EL10Ac2g04013 Beta vulgaris HOM05D005944 ORTHO05D007188 6.4e-68 261.5 235 53.6
COL.COLO4_20974 Corchorus olitorius HOM05D005944 ORTHO05D007188 6.4e-68 261.5 215 56.7
Sabra06G0186300 Salix brachista HOM05D005944 ORTHO05D007188 2.4e-67 259.6 245 54.3
Gorai.010G106200 Gossypium raimondii HOM05D005944 ORTHO05D007188 5.4e-67 258.5 212 59.0
Medtr3g109690 Medicago truncatula HOM05D005944 ORTHO05D007188 9.3e-67 257.7 237 54.0
Atru.chr7.2083 Acer truncatum HOM05D005944 ORTHO05D007188 1.6e-66 256.9 267 52.4
MBI01_g42891_MAGBIO Magnolia biondii HOM05D005944 ORTHO05D007188 3.5e-66 255.8 239 56.1
Aqoxy7G01465 Aquilegia oxysepala HOM05D005944 ORTHO05D007188 6.0e-66 255.0 230 54.8
Oeu031102.1 Olea europaea HOM05D005944 ORTHO05D007188 6.0e-66 255.0 244 55.7
PSO173G0044 Papaver somniferum HOM05D005944 ORTHO05D007188 6.0e-66 255.0 233 57.9
AUR62009271 Chenopodium quinoa HOM05D005944 ORTHO05D007188 1.3e-65 253.8 232 53.4
MSTRG.11696 Avicennia marina HOM05D005944 ORTHO05D007188 3.9e-65 252.3 249 53.8
EL10Ac2g04010 Beta vulgaris HOM05D005944 ORTHO05D007188 5.1e-65 251.9 235 52.8
Lj1g0013558 Lotus japonicus HOM05D005944 ORTHO05D007188 5.1e-65 251.9 218 54.6
Sc09g0009320 Simmondsia chinensis HOM05D005944 ORTHO05D007188 8.7e-65 251.1 248 52.8
Oeu030719.1 Olea europaea HOM05D005944 ORTHO05D007188 1.1e-64 250.8 236 55.9
AUR62039710 Chenopodium quinoa HOM05D005944 ORTHO05D007188 1.9e-64 250.0 236 53.4
Lsat_1_v5_gn_5_33661 Lactuca sativa HOM05D005944 ORTHO05D007188 3.3e-64 249.2 211 56.9
CANSAT25G1052 Cannabis sativa HOM05D005944 ORTHO05D007188 5.6e-64 248.4 252 55.2
Nitab4.5_0003794g0090 Nicotiana tabacum HOM05D005944 ORTHO05D007188 7.3e-64 248.1 256 49.2
ECA246G4186 Erigeron canadensis HOM05D005944 ORTHO05D007188 9.6e-64 247.7 218 55.0
DCAR_003123 Daucus carota HOM05D005944 ORTHO05D007188 2.1e-63 246.5 241 50.6
Migut.A00199 Erythranthe guttata HOM05D005944 ORTHO05D007188 8.1e-63 244.6 243 54.3
HanXRQChr08g0234421 Helianthus annuus HOM05D005944 ORTHO05D007188 7.6e-61 238.0 210 55.2
SalBow4G1457 Salvia bowleyana HOM05D005944 ORTHO05D007188 7.6e-61 238.0 228 53.1
PGSC0003DMG400002225 Solanum tuberosum HOM05D005944 ORTHO05D007188 7.6e-61 238.0 242 49.2
Sed0026395 Sechium edule HOM05D005944 ORTHO05D007188 1.7e-60 236.9 234 52.6
Peaxi162Scf00227g00915 Petunia axillaris HOM05D005944 ORTHO05D007188 4.9e-60 235.3 222 51.4
Ah.02g111320 Amaranthus hybridus HOM05D005944 ORTHO05D007188 1.1e-59 234.2 243 49.8
SGA_v2.0_scaffold243G44289 Striga asiatica HOM05D005944 ORTHO05D007188 1.4e-59 233.8 219 55.3
Nitab4.5_0001567g0220 Nicotiana tabacum HOM05D005944 ORTHO05D007188 2.4e-59 233.0 256 49.6
Sopen08g020390 Solanum pennellii HOM05D005944 ORTHO05D007188 3.2e-59 232.6 247 48.2
Solyc08g066550.3 Solanum lycopersicum HOM05D005944 ORTHO05D007188 2.7e-58 229.6 248 48.0
Sed0020456 Sechium edule HOM05D005944 ORTHO05D007188 7.9e-58 228.0 209 53.1
Zm00001eb384710 Zea mays HOM05D005944 ORTHO05D007188 3.9e-57 225.7 216 50.5
Carub.0006s1010 Capsella rubella HOM05D005944 ORTHO05D007188 6.7e-57 224.9 279 46.6
Thhalv10014372m.g Eutrema salsugineum HOM05D005944 ORTHO05D007188 8.7e-57 224.6 264 47.3
EL10Ac5g10487 Beta vulgaris HOM05D005944 ORTHO05D007188 1.9e-56 223.4 236 46.6
THA.LOC104799702 Tarenaya hassleriana HOM05D005944 ORTHO05D007188 7.4e-56 221.5 260 46.5
CARHR201600 Cardamine hirsuta HOM05D005944 ORTHO05D007188 9.6e-56 221.1 279 46.2
AUR62011965 Chenopodium quinoa HOM05D005944 ORTHO05D007188 1.6e-55 220.3 228 46.9
ECA233G3370 Erigeron canadensis HOM05D005944 ORTHO05D007188 2.1e-55 219.9 197 54.8
A10p26150 Brassica napus HOM05D005944 ORTHO05D007188 3.7e-55 219.2 280 45.4
BraA10t44674Z Brassica rapa HOM05D005944 ORTHO05D007188 3.7e-55 219.2 280 45.4
BcaB08g37038 Brassica carinata HOM05D005944 ORTHO05D007188 4.8e-55 218.8 278 45.7
BolC9t59349H Brassica oleracea HOM05D005944 ORTHO05D007188 4.8e-55 218.8 280 45.4
BcaC04g19210 Brassica carinata HOM05D005944 ORTHO05D007188 6.2e-55 218.4 280 43.9
C09p65200 Brassica napus HOM05D005944 ORTHO05D007188 6.2e-55 218.4 280 43.9
Sp6g32000 Schrenkiella parvula HOM05D005944 ORTHO05D007188 6.9e-54 214.9 277 44.4
AL6G22330 Arabidopsis lyrata HOM05D005944 ORTHO05D007188 1.5e-53 213.8 277 46.2
PGSC0003DMG400018561 Solanum tuberosum HOM05D005944 ORTHO05D007188 2.0e-53 213.4 217 50.7
Os06g0554100 Oryza sativa ssp. japonica HOM05D005944 ORTHO05D007188 9.9e-53 211.1 239 45.2
Aa31LG3G15570 Aethionema arabicum HOM05D005944 ORTHO05D007188 1.3e-52 210.7 285 42.1
unitig_32.g11474 Utricularia gibba HOM05D005944 ORTHO05D007188 2.9e-52 209.5 252 46.8
HanXRQChr02g0050591 Helianthus annuus HOM05D005944 ORTHO05D007188 8.4e-52 208.0 191 53.4
AT5G11620 Arabidopsis thaliana HOM05D005944 ORTHO05D007188 1.1e-51 207.6 278 45.3
TWI63G1513 Tripterygium wilfordii HOM05D005944 ORTHO05D007188 4.2e-51 205.7 229 49.8
Nitab4.5_0000664g0190 Nicotiana tabacum HOM05D005944 ORTHO05D007188 1.6e-50 203.8 247 45.7
FvH4_2g35480 Fragaria vesca HOM05D005944 ORTHO05D007188 1.8e-49 200.3 214 47.2
FAN27G2199 Fragaria x ananassa HOM05D005944 ORTHO05D007188 2.3e-49 199.9 214 47.2
RcHm_v2.0_Chr6g0306401 Rosa chinensis HOM05D005944 ORTHO05D007188 1.5e-48 197.2 207 47.8
Nitab4.5_0001515g0030 Nicotiana tabacum HOM05D005944 ORTHO05D007188 5.6e-48 195.3 254 42.5
FAN20G0862 Fragaria x ananassa HOM05D005944 ORTHO05D007188 7.4e-48 194.9 227 43.6
FAN15G0753 Fragaria x ananassa HOM05D005944 ORTHO05D007188 4.8e-47 192.2 214 45.8
HPP92_024066 Vanilla planifolia HOM05D005944 ORTHO05D007188 1.1e-46 191.0 227 47.6
HanXRQChr13g0402041 Helianthus annuus HOM05D005944 ORTHO05D007188 6.0e-42 175.3 201 45.8
Actinidia14678 Actinidia chinensis HOM05D005944 ORTHO05D007188 2.5e-40 169.9 129 64.3
Glyma.04G084500 Glycine max HOM05D005944 ORTHO05D007188 2.8e-39 166.4 125 64.8
PSO824G0019 Papaver somniferum HOM05D005944 ORTHO05D007188 9.0e-38 161.4 208 42.8
ATR0561G048 Amborella trichopoda HOM05D005944 ORTHO05D007188 2.2e-36 156.8 224 42.4
Peaxi162Scf00247g00005 Petunia axillaris HOM05D005944 ORTHO05D007188 2.2e-36 156.8 153 51.6
PSO832G4257 Papaver somniferum HOM05D005944 ORTHO05D007188 9.4e-35 151.4 204 40.2
Sopen11g028870 Solanum pennellii HOM05D010581 ORTHO05D012655 1.4e-33 147.5 160 51.2
PSO832G3272 Papaver somniferum HOM05D005944 ORTHO05D007188 1.9e-32 143.7 205 41.0
PSO173G0086 Papaver somniferum HOM05D005944 ORTHO05D007188 2.5e-32 143.3 204 39.2
Solyc11g071190.3 Solanum lycopersicum HOM05D005944 ORTHO05D007188 1.3e-31 141.0 149 51.7
PSO507G0019 Papaver somniferum HOM05D005944 ORTHO05D007188 4.8e-31 139.0 193 43.5
SEGI_16652 Sequoiadendron giganteum HOM05D005944 ORTHO05D007188 3.4e-29 132.9 239 37.2
SMO281G0003 Selaginella moellendorffii HOM05D005944 ORTHO05D007188 7.7e-29 131.7 211 37.0
PSO173G0103 Papaver somniferum HOM05D005944 ORTHO05D007188 4.2e-27 125.9 216 36.6
Zm00001eb277580 Zea mays HOM05D005944 ORTHO05D007188 4.2e-27 125.9 173 42.2
PSO824G0035 Papaver somniferum HOM05D004877 ORTHO05D007188 9.4e-27 124.8 216 36.6
SMO244G0014 Selaginella moellendorffii HOM05D005944 ORTHO05D007188 4.7e-26 122.5 230 34.3
Pp3c11_3140 Physcomitrium patens HOM05D005944 ORTHO05D007188 1.4e-25 120.9 230 35.2
AagrBONN_evm.TU.Sc2ySwM_228.5588 Anthoceros agrestis HOM05D005944 ORTHO05D007188 2.6e-24 116.7 228 34.6
Cre09.g393550 Chlamydomonas reinhardtii HOM05D005944 ORTHO05D007188 6.5e-20 102.1 193 34.2
CDE05G1550 Ceratophyllum demersum HOM05D005944 ORTHO05D007188 1.9e-19 100.5 117 41.9
MCO02G382 Micromonas commoda HOM05D005944 ORTHO05D007188 5.9e-13 79.0 224 31.2
C02p05290 Brassica napus HOM05D005944 ORTHO05D007188 1.3e-12 77.8 105 42.9
BolC2t06477H Brassica oleracea HOM05D005944 ORTHO05D007188 2.2e-12 77.0 105 42.9
RcHm_v2.0_Chr6g0306281 Rosa chinensis HOM05D005944 ORTHO05D007188 3.8e-12 76.3 50 66.0
RcHm_v2.0_Chr6g0306391 Rosa chinensis HOM05D005944 ORTHO05D007188 4.2e-11 72.8 96 37.5
RcHm_v2.0_Chr6g0306291 Rosa chinensis HOM05D005944 ORTHO05D007188 3.0e-09 66.6 54 48.1
Mapoly0068s0072 Marchantia polymorpha HOM05D005944 ORTHO05D007188 6.7e-09 65.5 173 25.4
A02p01110 Brassica napus HOM05D005944 ORTHO05D007188 1.3e-07 61.2 33 81.8


User provided reference genes

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