Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR031G3051 Punica granatum HOM05D004730 ORTHO05D005705 5.4e-303 1043.5 518 100.0
PGR031G3931 Punica granatum HOM05D004730 ORTHO05D005705 7.4e-244 847.0 536 81.5
Eucgr.D02369 Eucalyptus grandis HOM05D004730 ORTHO05D005705 2.7e-201 705.7 533 68.9
Ciclev10019746m.g Citrus clementina HOM05D004730 ORTHO05D005705 2.1e-193 679.5 529 67.1
Thecc.01G343400 Theobroma cacao HOM05D004730 ORTHO05D005705 4.3e-191 671.8 530 66.6
Potri.002G170100 Populus trichocarpa HOM05D004730 ORTHO05D005705 4.7e-190 668.3 522 66.5
Medtr3g018770 Medicago truncatula HOM05D004730 ORTHO05D005705 1.8e-189 666.4 535 65.4
Gorai.004G152100 Gossypium raimondii HOM05D004730 ORTHO05D005705 8.9e-189 664.1 539 65.9
Prupe.2G187200 Prunus persica HOM05D004730 ORTHO05D005705 4.4e-188 661.8 522 67.2
FAN03G1043 Fragaria x ananassa HOM05D004730 ORTHO05D005705 1.3e-187 660.2 528 65.5
FAN10G2003 Fragaria x ananassa HOM05D004730 ORTHO05D005705 2.2e-187 659.4 528 65.3
Gohir.D08G146500 Gossypium hirsutum HOM05D004730 ORTHO05D005705 2.2e-187 659.4 539 65.5
Cfa003807 Carpinus fangiana HOM05D004730 ORTHO05D005705 1.4e-186 656.8 520 66.5
Nn1g01877 Nelumbo nucifera HOM05D004730 ORTHO05D005705 1.4e-186 656.8 533 64.5
Gohir.A08G125600 Gossypium hirsutum HOM05D004730 ORTHO05D005705 5.4e-186 654.8 539 65.1
FvH4_7g16330 Fragaria vesca HOM05D004730 ORTHO05D005705 7.1e-186 654.4 528 65.3
TPR.G9866 Trifolium pratense HOM05D004730 ORTHO05D005705 1.6e-185 653.3 538 63.9
FAN06G3857 Fragaria x ananassa HOM05D004730 ORTHO05D005705 2.1e-185 652.9 528 65.2
RcHm_v2.0_Chr1g0359341 Rosa chinensis HOM05D004730 ORTHO05D005705 2.7e-185 652.5 528 65.0
Atru.chr5.659 Acer truncatum HOM05D004730 ORTHO05D005705 3.5e-185 652.1 535 66.0
FAN06G4548 Fragaria x ananassa HOM05D004730 ORTHO05D005705 3.5e-185 652.1 528 65.2
vmacro13156 Vaccinium macrocarpon HOM05D004730 ORTHO05D005705 1.0e-184 650.6 529 65.6
Lalb_Chr21g0314351 Lupinus albus HOM05D004730 ORTHO05D005705 1.7e-184 649.8 527 65.8
Rhsim07G0004700 Rhododendron simsii HOM05D004730 ORTHO05D005705 1.5e-183 646.7 546 64.1
GSVIVG01027092001 Vitis vinifera HOM05D004730 ORTHO05D005705 1.9e-183 646.4 535 64.9
Lj3g0019549 Lotus japonicus HOM05D004730 ORTHO05D005705 2.5e-183 646.0 526 63.9
Glyma.04G141000 Glycine max HOM05D004730 ORTHO05D005705 1.2e-182 643.7 534 63.7
Glyma.11G153900 Glycine max HOM05D004730 ORTHO05D005705 1.2e-182 643.7 534 63.5
Duzib138G0598 Durio zibethinus HOM05D004730 ORTHO05D005705 2.8e-182 642.5 530 64.5
Nitab4.5_0000258g0150 Nicotiana tabacum HOM05D004730 ORTHO05D005705 6.2e-182 641.3 546 63.2
MD07G1148700 Malus domestica HOM05D004730 ORTHO05D005705 2.4e-181 639.4 529 64.5
PGSC0003DMG400017986 Solanum tuberosum HOM05D004730 ORTHO05D005705 2.4e-181 639.4 538 62.6
Thhalv10005894m.g Eutrema salsugineum HOM05D004730 ORTHO05D005705 3.1e-181 639.0 527 63.6
Actinidia10133 Actinidia chinensis HOM05D004730 ORTHO05D005705 2.6e-180 636.0 503 67.2
FAN10G3709 Fragaria x ananassa HOM05D004730 ORTHO05D005705 2.6e-180 636.0 519 64.7
DCAR_005384 Daucus carota HOM05D004730 ORTHO05D005705 7.6e-180 634.4 530 63.6
CAN.G239.1 Capsicum annuum HOM05D004730 ORTHO05D005705 1.3e-179 633.6 537 63.7
Sp5g01680 Schrenkiella parvula HOM05D004730 ORTHO05D005705 1.3e-179 633.6 525 63.6
Sopen05g028800 Solanum pennellii HOM05D004730 ORTHO05D005705 1.7e-179 633.3 539 62.3
Cc02_g39260 Coffea canephora HOM05D004730 ORTHO05D005705 2.2e-179 632.9 537 63.7
MELO3C022308.2 Cucumis melo HOM05D004730 ORTHO05D005705 3.8e-179 632.1 526 63.7
THA.LOC104817359 Tarenaya hassleriana HOM05D004730 ORTHO05D005705 4.9e-179 631.7 524 63.5
VMungo1080G1812 Vigna mungo HOM05D004730 ORTHO05D005705 8.4e-179 630.9 509 64.4
Solyc05g050390.4 Solanum lycopersicum HOM05D004730 ORTHO05D005705 1.9e-178 629.8 539 62.2
CsaV3_6G008300 Cucumis sativus L. HOM05D004730 ORTHO05D005705 1.2e-177 627.1 522 63.4
arahy.Tifrunner.gnm1.ann1.DU0G1C Arachis hypogaea HOM05D004730 ORTHO05D005705 2.7e-177 625.9 553 61.1
CANSAT56G1965 Cannabis sativa HOM05D004730 ORTHO05D005705 2.7e-177 625.9 522 62.6
Carub.0005s2846 Capsella rubella HOM05D004730 ORTHO05D005705 2.7e-177 625.9 527 62.4
Carub.0003s3432 Capsella rubella HOM05D004730 ORTHO05D005705 8.7e-176 620.9 527 62.0
Peaxi162Scf00403g00522 Petunia axillaris HOM05D004730 ORTHO05D005705 8.7e-176 620.9 541 61.2
CARHR172020 Cardamine hirsuta HOM05D004730 ORTHO05D005705 4.3e-175 618.6 529 62.0
SGA_v2.0_scaffold5G03013 Striga asiatica HOM05D004730 ORTHO05D005705 7.3e-175 617.8 519 64.2
Phvul.005G029900 Phaseolus vulgaris HOM05D004730 ORTHO05D005705 1.3e-174 617.1 509 63.3
PSO339G2575 Papaver somniferum HOM05D004730 ORTHO05D005705 1.6e-174 616.7 535 62.1
MD01G1079900 Malus domestica HOM05D004730 ORTHO05D005705 2.1e-174 616.3 523 62.7
Aqoxy2G00449 Aquilegia oxysepala HOM05D004730 ORTHO05D005705 2.8e-174 615.9 523 62.1
Haze_15648 Corylus avellana HOM05D004730 ORTHO05D005705 6.2e-174 614.8 538 62.3
AL5G44220 Arabidopsis lyrata HOM05D004730 ORTHO05D005705 1.8e-173 613.2 527 62.0
Sed0022953 Sechium edule HOM05D004730 ORTHO05D005705 1.8e-173 613.2 525 62.7
CSS0011474 Camellia sinensis var. sinensis HOM05D004730 ORTHO05D005705 2.4e-173 612.8 530 61.7
Aa31LG10G15710 Aethionema arabicum HOM05D004730 ORTHO05D005705 9.0e-173 610.9 525 61.7
MBI06_g08459_MAGBIO Magnolia biondii HOM05D004730 ORTHO05D005705 1.5e-172 610.1 536 61.2
Nitab4.5_0004506g0070 Nicotiana tabacum HOM05D004730 ORTHO05D005705 2.0e-172 609.8 546 61.2
Lsat_1_v5_gn_3_139961 Lactuca sativa HOM05D004730 ORTHO05D005705 7.6e-172 607.8 521 63.0
SalBow3G2618 Salvia bowleyana HOM05D004730 ORTHO05D005705 9.9e-172 607.4 536 61.2
Sabra02G0142200 Salix brachista HOM05D004730 ORTHO05D005705 4.9e-171 605.1 566 58.3
C06p27700 Brassica napus HOM05D004730 ORTHO05D005705 6.4e-171 604.7 532 61.7
C06p27860 Brassica napus HOM05D004730 ORTHO05D005705 6.4e-171 604.7 532 61.7
PSO210G5634 Papaver somniferum HOM05D004730 ORTHO05D005705 3.2e-170 602.4 535 60.6
COL.COLO4_06293 Corchorus olitorius HOM05D004730 ORTHO05D005705 5.4e-170 601.7 479 67.2
Hund16708 Selenicereus undatus HOM05D004730 ORTHO05D005705 1.6e-169 600.1 543 59.1
CiPaw.01G075800 Carya illinoinensis HOM05D004730 ORTHO05D005705 7.9e-169 597.8 476 67.2
AUR62023469 Chenopodium quinoa HOM05D004730 ORTHO05D005705 1.0e-168 597.4 537 60.7
BolC6t37941H Brassica oleracea HOM05D004730 ORTHO05D005705 3.9e-168 595.5 553 59.1
ECA248G0182 Erigeron canadensis HOM05D004730 ORTHO05D005705 1.1e-167 594.0 533 61.5
Ah.05g179630 Amaranthus hybridus HOM05D004730 ORTHO05D005705 1.9e-167 593.2 535 60.4
Migut.B01859 Erythranthe guttata HOM05D004730 ORTHO05D005705 2.5e-167 592.8 539 60.9
MSTRG.17337 Avicennia marina HOM05D004730 ORTHO05D005705 3.3e-167 592.4 523 61.6
arahy.Tifrunner.gnm1.ann1.EBD5YY Arachis hypogaea HOM05D004730 ORTHO05D005705 1.4e-165 587.0 526 60.6
BcaC08g45152 Brassica carinata HOM05D004730 ORTHO05D005705 5.3e-165 585.1 533 59.7
EL10Ac1g00278 Beta vulgaris HOM05D004730 ORTHO05D005705 6.9e-165 584.7 539 59.2
Oeu015369.3 Olea europaea HOM05D004730 ORTHO05D005705 9.0e-165 584.3 566 58.1
Sc01g0002740 Simmondsia chinensis HOM05D004730 ORTHO05D005705 4.5e-164 582.0 522 59.0
Lj7C501G3 Lonicera japonica HOM05D004730 ORTHO05D005705 3.8e-163 578.9 614 55.0
Sc23g0002110 Simmondsia chinensis HOM05D004730 ORTHO05D005705 3.5e-161 572.4 497 60.6
BraA07t30209Z Brassica rapa HOM05D004730 ORTHO05D005705 3.9e-160 568.9 482 63.5
A07p25690 Brassica napus HOM05D004730 ORTHO05D005705 1.1e-159 567.4 482 63.5
HanXRQChr11g0353001 Helianthus annuus HOM05D004730 ORTHO05D005705 5.6e-159 565.1 536 60.6
Manes.01G246700 Manihot esculenta HOM05D004730 ORTHO05D005705 1.8e-157 560.1 449 65.7
Aa31LG1G27820 Aethionema arabicum HOM05D004730 ORTHO05D005705 3.1e-157 559.3 524 58.0
TWI59G0293 Tripterygium wilfordii HOM05D004730 ORTHO05D005705 7.6e-156 554.7 542 55.7
TWI23G0180 Tripterygium wilfordii HOM05D004730 ORTHO05D005705 1.4e-154 550.4 543 55.2
Duzib133G1016 Durio zibethinus HOM05D004730 ORTHO05D005705 3.2e-154 549.3 529 58.2
unitig_62.g23797 Utricularia gibba HOM05D004730 ORTHO05D005705 1.1e-149 534.3 528 56.4
ATR0213G028 Amborella trichopoda HOM05D004730 ORTHO05D005705 2.6e-148 529.6 530 54.7
FAN01G1335 Fragaria x ananassa HOM05D004730 ORTHO05D005705 5.7e-143 511.9 435 63.0
AT3G61710 Arabidopsis thaliana HOM05D004730 ORTHO05D005705 2.9e-139 499.6 457 58.6
HPP92_011453 Vanilla planifolia HOM05D004730 ORTHO05D005705 5.7e-135 485.3 538 51.9
AUR62004484 Chenopodium quinoa HOM05D004730 ORTHO05D005705 5.9e-132 475.3 490 55.7
Os01g0681400 Oryza sativa ssp. japonica HOM05D004730 ORTHO05D005705 1.1e-130 471.1 506 51.2
Os03g0644000 Oryza sativa ssp. japonica HOM05D004730 ORTHO05D005705 1.6e-129 467.2 513 51.1
Zm00001eb142950 Zea mays HOM05D004730 ORTHO05D005705 1.6e-129 467.2 507 51.5
CDE05G0988 Ceratophyllum demersum HOM05D004730 ORTHO05D005705 8.8e-128 461.5 529 49.1
SEGI_06994 Sequoiadendron giganteum HOM05D004730 ORTHO05D005705 1.5e-127 460.7 559 46.7
Psat5g217520 Pisum sativum HOM05D004730 ORTHO05D005705 1.0e-120 438.0 403 59.3
SHI13286 Sapria himalayana HOM05D004730 ORTHO05D005705 1.0e-120 438.0 454 54.6
Zm00001eb364100 Zea mays HOM05D004730 ORTHO05D005705 2.6e-119 433.3 511 47.4
Oeu019761.1 Olea europaea HOM05D004730 ORTHO05D005705 3.7e-118 429.5 361 64.0
Os03g0258500 Oryza sativa ssp. japonica HOM05D004730 ORTHO05D005705 1.8e-117 427.2 533 48.2
Dinv32581 Davidia involucrata HOM05D004730 ORTHO05D005705 2.0e-116 423.7 390 61.3
Dinv35110 Davidia involucrata HOM05D004730 ORTHO05D005705 7.7e-116 421.8 390 60.8
Pp3c10_4130 Physcomitrium patens HOM05D004730 ORTHO05D005705 2.7e-113 413.3 512 46.9
vmacro12679 Vaccinium macrocarpon HOM05D004730 ORTHO05D005705 8.8e-112 408.3 422 55.0
TAR374G0734 Trochodendron aralioides HOM05D004730 ORTHO05D005705 2.8e-110 403.3 383 58.2
ClCG06G002220 Citrullus lanatus HOM05D004730 ORTHO05D005705 3.8e-107 392.9 374 58.3
Mapoly0091s0016 Marchantia polymorpha HOM05D004730 ORTHO05D005705 8.0e-105 385.2 563 43.0
Pp3c1_21510 Physcomitrium patens HOM05D004730 ORTHO05D005705 4.0e-104 382.9 524 44.5
SMO114G0122 Selaginella moellendorffii HOM05D004730 ORTHO05D005705 4.0e-104 382.9 515 44.5
CANSAT56G2405 Cannabis sativa HOM05D004730 ORTHO05D005705 5.0e-99 365.9 287 64.5
BolC6t37951H Brassica oleracea HOM05D004730 ORTHO05D005705 1.4e-96 357.8 376 56.1
AagrBONN_evm.TU.Sc2ySwM_344.2008 Anthoceros agrestis HOM05D004730 ORTHO05D005705 1.1e-93 348.2 529 40.3
Rhsim01G0172100 Rhododendron simsii HOM05D004730 ORTHO05D005705 1.4e-85 321.2 444 46.2
Cpa.g.sc96.6 Carica papaya HOM05D004730 ORTHO05D005705 5.4e-85 319.3 353 53.8
Actinidia20237 Actinidia chinensis HOM05D004730 ORTHO05D005705 1.6e-84 317.8 314 57.0
C06p27850 Brassica napus HOM05D004730 ORTHO05D006825 2.8e-81 307.0 353 54.7
Ca_26857_v3 Cicer arietinum L. HOM05D004730 ORTHO05D005705 4.9e-78 296.2 300 55.7
CARHR263800 Cardamine hirsuta HOM05D004730 ORTHO05D005705 3.9e-75 286.6 204 70.1
FAN01G0353 Fragaria x ananassa HOM05D004730 ORTHO05D005705 5.6e-74 282.7 163 80.4
MBI01_g34153_MAGBIO Magnolia biondii HOM05D004730 ORTHO05D005705 1.6e-73 281.2 494 40.3
CBR_g66692 Chara braunii HOM05D004730 ORTHO05D005705 3.1e-72 276.9 416 38.9
MBI06_g41841_MAGBIO Magnolia biondii HOM05D004730 ORTHO05D005705 4.0e-64 250.0 198 62.6
Ca_26830_v3 Cicer arietinum L. HOM05D004730 ORTHO05D005705 2.0e-63 247.7 145 79.3
Cpa.g.sc96.5 Carica papaya HOM05D004730 ORTHO05D005705 3.9e-59 233.4 146 75.3
Actinidia20236 Actinidia chinensis HOM05D004730 ORTHO05D005705 2.5e-58 230.7 145 77.2
C06p27910 Brassica napus HOM05D000590 ORTHO05D006825 3.3e-58 230.3 227 59.5
MBI01_g41444_MAGBIO Magnolia biondii HOM05D004730 ORTHO05D005705 3.1e-56 223.8 291 48.8
TAR374G1455 Trochodendron aralioides HOM05D004730 ORTHO05D005705 3.1e-48 197.2 227 49.3
Cre01.g020264 Chlamydomonas reinhardtii HOM05D004730 ORTHO05D005705 5.1e-43 179.9 396 30.6
Hma1.2p1_0295F.1_g116660 Hydrangea macrophylla HOM05D004730 ORTHO05D005705 3.4e-39 167.2 162 53.1
ATR0213G009 Amborella trichopoda HOM05D004730 ORTHO05D005705 2.1e-36 157.9 100 72.0
MBI01_g11796_MAGBIO Magnolia biondii HOM05D004730 ORTHO05D005705 1.8e-35 154.8 100 73.0
MCO03G136 Micromonas commoda HOM05D004730 ORTHO05D005705 5.7e-34 149.8 299 33.1
ATR0213G026 Amborella trichopoda HOM05D004730 ORTHO05D005705 7.4e-34 149.4 194 45.9
PRCOL_00007095 Prasinoderma coloniale HOM05D004730 ORTHO05D005705 7.6e-31 139.4 330 33.3
Ca_26856_v3 Cicer arietinum L. HOM05D004730 ORTHO05D005705 2.9e-30 137.5 139 58.3
arahy.Tifrunner.gnm1.ann1.PHUB4S Arachis hypogaea HOM05D004730 ORTHO05D005705 1.8e-24 118.2 68 80.9
CDE08G1494 Ceratophyllum demersum HOM05D004730 ORTHO05D005705 1.5e-18 98.6 409 25.9
MBI10_g27627_MAGBIO Magnolia biondii HOM05D004730 ORTHO05D017720 1.7e-17 95.1 65 75.4
arahy.Tifrunner.gnm1.ann1.LSW4XK Arachis hypogaea HOM05D000092 ORTHO05D000042 1.2e-15 89.0 72 65.3
Cfa022403 Carpinus fangiana HOM05D004730 ORTHO05D005705 4.2e-13 80.5 334 24.0
GSVIVG01027089001 Vitis vinifera HOM05D004730 ORTHO05D005705 5.2e-11 73.6 45 75.6
arahy.Tifrunner.gnm1.ann1.CLZ951 Arachis hypogaea HOM05D004730 ORTHO05D005705 2.6e-10 71.2 75 53.3
MBI01_g41445_MAGBIO Magnolia biondii HOM05D004730 ORTHO05D005705 6.3e-09 66.6 58 55.2
CDE08G0541 Ceratophyllum demersum HOM05D004730 ORTHO05D005705 1.1e-08 65.9 99 45.5
arahy.Tifrunner.gnm1.ann1.VTA1BU Arachis hypogaea HOM05D004730 ORTHO05D005705 4.1e-08 63.9 70 51.4
SHI13287 Sapria himalayana HOM05D005377 ORTHO05D003034 3.5e-07 60.8 58 46.6
Nn1g06163 Nelumbo nucifera HOM05D004730 ORTHO05D005705 7.7e-07 59.7 44 52.3


User provided reference genes

Program Settings