Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR031G2569 Punica granatum HOM05D004295 ORTHO05D004901 0.0e+00 1687.2 934 100.0
Eucgr.F03507 Eucalyptus grandis HOM05D004295 ORTHO05D004901 2.4e-192 676.8 944 45.6
Thecc.07G027600 Theobroma cacao HOM05D004295 ORTHO05D004901 3.6e-172 609.8 928 42.0
Cfa020273 Carpinus fangiana HOM05D004295 ORTHO05D004901 3.0e-171 606.7 876 43.0
Dinv40798 Davidia involucrata HOM05D004295 ORTHO05D004901 1.1e-168 598.2 945 43.0
Manes.15G066000 Manihot esculenta HOM05D004295 ORTHO05D004901 5.6e-165 585.9 935 41.3
Gohir.D08G034800 Gossypium hirsutum HOM05D004295 ORTHO05D004901 4.0e-163 579.7 931 41.5
Gorai.004G032700 Gossypium raimondii HOM05D004295 ORTHO05D004901 4.0e-163 579.7 931 41.5
Gohir.A08G024300 Gossypium hirsutum HOM05D004295 ORTHO05D004901 9.8e-162 575.1 930 40.3
COL.COLO4_09741 Corchorus olitorius HOM05D004295 ORTHO05D004901 6.4e-161 572.4 939 41.5
QL08p007634 Quercus lobata HOM05D004295 ORTHO05D004901 6.4e-161 572.4 946 41.4
Haze_09750 Corylus avellana HOM05D004295 ORTHO05D004901 3.0e-158 563.5 919 41.2
Dinv22227 Davidia involucrata HOM05D004295 ORTHO05D004901 3.9e-158 563.1 895 40.8
TAR724G0001 Trochodendron aralioides HOM05D004295 ORTHO05D004901 6.6e-158 562.4 892 40.5
CSS0022956 Camellia sinensis var. sinensis HOM05D004295 ORTHO05D004901 3.3e-157 560.1 881 41.2
CSS0006554 Camellia sinensis var. sinensis HOM05D004295 ORTHO05D004901 7.3e-157 558.9 925 40.8
TWI39G0230 Tripterygium wilfordii HOM05D004295 ORTHO05D004901 2.1e-156 557.4 943 40.2
arahy.Tifrunner.gnm1.ann1.WPCM0F Arachis hypogaea HOM05D004295 ORTHO05D004901 1.8e-155 554.3 890 41.0
Atru.chr2.3536 Acer truncatum HOM05D004295 ORTHO05D004901 5.8e-154 549.3 919 41.0
arahy.Tifrunner.gnm1.ann1.9RR6WG Arachis hypogaea HOM05D004295 ORTHO05D004901 3.7e-153 546.6 890 40.8
FvH4_3g23572 Fragaria vesca HOM05D004295 ORTHO05D004901 4.9e-153 546.2 931 40.3
TWI38G1745 Tripterygium wilfordii HOM05D004295 ORTHO05D004901 8.3e-153 545.4 948 40.0
Glyma.02G295400 Glycine max HOM05D004295 ORTHO05D004901 1.1e-152 545.0 891 40.7
Atru.chr2.3555 Acer truncatum HOM05D004295 ORTHO05D004901 3.2e-152 543.5 907 40.9
RcHm_v2.0_Chr5g0041571 Rosa chinensis HOM05D004295 ORTHO05D004901 3.2e-152 543.5 1013 38.4
CANSAT11G1231 Cannabis sativa HOM05D004295 ORTHO05D004901 4.6e-151 539.7 921 40.0
Ca_06350_v3 Cicer arietinum L. HOM05D004295 ORTHO05D004901 4.6e-151 539.7 939 39.1
Psat2g010080 Pisum sativum HOM05D004295 ORTHO05D004901 1.5e-149 534.6 932 39.3
Phvul.008G272900 Phaseolus vulgaris HOM05D004295 ORTHO05D004901 5.6e-149 532.7 888 39.8
Glyma.14G018000 Glycine max HOM05D004295 ORTHO05D004901 3.6e-148 530.0 893 40.2
Ciclev10007504m.g Citrus clementina HOM05D004295 ORTHO05D004901 1.5e-146 524.6 947 39.8
Rhsim04G0016300 Rhododendron simsii HOM05D004295 ORTHO05D004901 1.5e-146 524.6 872 40.5
VMungo0647G0514 Vigna mungo HOM05D004295 ORTHO05D004901 1.5e-146 524.6 931 38.1
FAN21G2245 Fragaria x ananassa HOM05D004295 ORTHO05D004901 2.6e-146 523.9 922 39.8
MD11G1209200 Malus domestica HOM05D004295 ORTHO05D004901 1.3e-145 521.5 998 39.5
MD03G1193000 Malus domestica HOM05D004295 ORTHO05D004901 2.9e-145 520.4 1030 36.1
TAR629G3495 Trochodendron aralioides HOM05D004295 ORTHO05D004901 6.4e-145 519.2 947 38.4
TPR.G30656 Trifolium pratense HOM05D004295 ORTHO05D004901 1.4e-144 518.1 899 38.7
Medtr5g093940 Medicago truncatula HOM05D004295 ORTHO05D004901 3.2e-144 516.9 957 37.7
Potri.001G358900 Populus trichocarpa HOM05D004295 ORTHO05D004901 4.6e-143 513.1 940 37.4
Sabra16G0236700 Salix brachista HOM05D004295 ORTHO05D004901 6.0e-143 512.7 885 38.8
vmacro09687 Vaccinium macrocarpon HOM05D004295 ORTHO05D004901 7.8e-143 512.3 909 38.7
Lalb_Chr10g0107181 Lupinus albus HOM05D004295 ORTHO05D004901 1.7e-142 511.1 892 39.6
Nn7g37915 Nelumbo nucifera HOM05D004295 ORTHO05D004901 3.0e-142 510.4 947 39.2
Hma1.2p1_0036F.1_g023080 Hydrangea macrophylla HOM05D004295 ORTHO05D004901 2.5e-141 507.3 897 38.7
Nn1g03330 Nelumbo nucifera HOM05D004295 ORTHO05D004901 3.0e-134 483.8 943 37.6
FAN11G1876 Fragaria x ananassa HOM05D004295 ORTHO05D004901 9.6e-133 478.8 963 38.6
Aqoxy1G04109 Aquilegia oxysepala HOM05D004295 ORTHO05D004901 2.6e-130 470.7 900 37.1
CSS0023200 Camellia sinensis var. sinensis HOM05D004295 ORTHO05D004901 1.4e-128 464.9 910 35.7
Migut.M01703 Erythranthe guttata HOM05D004295 ORTHO05D004901 2.1e-127 461.1 886 37.1
Lj8A173T74 Lonicera japonica HOM05D004295 ORTHO05D004901 2.7e-127 460.7 881 36.8
Actinidia10753 Actinidia chinensis HOM05D004295 ORTHO05D004901 6.0e-127 459.5 863 39.6
MSTRG.6962 Avicennia marina HOM05D004295 ORTHO05D004901 1.3e-126 458.4 914 36.2
Cc05_g14350 Coffea canephora HOM05D004295 ORTHO05D004901 3.0e-126 457.2 890 36.6
PSO302G0053 Papaver somniferum HOM05D004295 ORTHO05D004901 5.1e-126 456.4 919 36.6
PSO210G3166 Papaver somniferum HOM05D004295 ORTHO05D004901 6.2e-124 449.5 922 36.2
MELO3C014171.2 Cucumis melo HOM05D004295 ORTHO05D004901 1.4e-123 448.4 908 35.2
CAN.G791.3 Capsicum annuum HOM05D004295 ORTHO05D004901 1.8e-123 448.0 931 35.3
Nn1g07354 Nelumbo nucifera HOM05D003850 ORTHO05D004515 2.6e-122 444.1 885 37.2
Solyc12g014540.2 Solanum lycopersicum HOM05D004295 ORTHO05D004901 7.6e-122 442.6 923 34.9
Prupe.4G224000 Prunus persica HOM05D004295 ORTHO05D004901 1.7e-121 441.4 663 41.0
Sopen12g007410 Solanum pennellii HOM05D004295 ORTHO05D004901 4.9e-121 439.9 916 34.8
Sc16g0005710 Simmondsia chinensis HOM05D004295 ORTHO05D004901 1.2e-119 435.3 951 34.7
CiPaw.11G195000 Carya illinoinensis HOM05D004295 ORTHO05D004901 6.0e-119 433.0 632 42.7
ClCG10G005040 Citrullus lanatus HOM05D004295 ORTHO05D004901 8.7e-118 429.1 942 34.6
Peaxi162Scf00339g01131 Petunia axillaris HOM05D004295 ORTHO05D004901 2.5e-117 427.6 931 35.2
Sed0002209 Sechium edule HOM05D004295 ORTHO05D004901 9.6e-117 425.6 911 34.5
CsaV3_3G004720 Cucumis sativus L. HOM05D004295 ORTHO05D004901 6.2e-116 422.9 928 34.5
SGA_v2.0_scaffold168G38508 Striga asiatica HOM05D004295 ORTHO05D004901 9.0e-115 419.1 897 40.6
Oeu005986.1 Olea europaea HOM05D004295 ORTHO05D004901 3.4e-114 417.2 888 35.0
MBI16_g42268_MAGBIO Magnolia biondii HOM05D004295 ORTHO05D004901 4.2e-112 410.2 899 35.2
Sopen07g033210 Solanum pennellii HOM05D004295 ORTHO05D004901 1.8e-110 404.8 895 34.1
AUR62015886 Chenopodium quinoa HOM05D004295 ORTHO05D004901 3.9e-110 403.7 910 32.6
DCAR_022592 Daucus carota HOM05D004295 ORTHO05D004901 8.7e-110 402.5 948 32.9
Solyc07g065000.3 Solanum lycopersicum HOM05D004295 ORTHO05D004901 8.7e-110 402.5 896 34.8
Lsat_1_v5_gn_5_2601 Lactuca sativa HOM05D004295 ORTHO05D004901 1.1e-109 402.1 913 34.0
AUR62020337 Chenopodium quinoa HOM05D004295 ORTHO05D004901 2.5e-109 401.0 913 32.9
CAN.G337.52 Capsicum annuum HOM05D004295 ORTHO05D004901 5.7e-109 399.8 898 34.7
PGSC0003DMG402022202 Solanum tuberosum HOM05D004295 ORTHO05D004901 9.7e-109 399.1 887 33.6
Nitab4.5_0005221g0010 Nicotiana tabacum HOM05D004295 ORTHO05D004901 1.1e-107 395.6 877 34.8
Nitab4.5_0001160g0060 Nicotiana tabacum HOM05D004295 ORTHO05D004901 1.8e-107 394.8 912 34.4
DCAR_013201 Daucus carota HOM05D004295 ORTHO05D004901 6.9e-107 392.9 916 33.4
Hund01951 Selenicereus undatus HOM05D004295 ORTHO05D004901 2.0e-106 391.3 893 32.8
FAN16G0173 Fragaria x ananassa HOM05D004295 ORTHO05D004901 2.6e-106 391.0 859 37.1
LjContig00272g0028044 Lotus japonicus HOM05D004295 ORTHO05D004901 3.8e-105 387.1 952 32.4
HanXRQChr05g0159731 Helianthus annuus HOM05D004295 ORTHO05D004901 1.7e-100 371.7 914 32.2
FAN25G1926 Fragaria x ananassa HOM05D004295 ORTHO05D004901 6.3e-100 369.8 659 40.1
EL10Ac4g07685 Beta vulgaris HOM05D004295 ORTHO05D004901 6.9e-99 366.3 884 32.9
Lj1A881T81 Lonicera japonica HOM05D004295 ORTHO05D004901 3.4e-98 364.0 827 34.7
SHI26565 Sapria himalayana HOM05D004295 ORTHO05D004901 1.4e-96 358.6 854 32.4
Nitab4.5_0003989g0010 Nicotiana tabacum HOM05D004295 ORTHO05D004901 6.1e-95 353.2 909 31.2
ECA246G1209 Erigeron canadensis HOM05D004295 ORTHO05D004901 1.5e-93 348.6 885 32.0
Ah.06g182200 Amaranthus hybridus HOM05D004295 ORTHO05D004901 9.1e-91 339.3 889 31.4
Oeu007994.1 Olea europaea HOM05D004295 ORTHO05D004901 2.1e-87 328.2 842 33.7
Cpa.g.sc12.236 Carica papaya HOM05D004295 ORTHO05D004901 8.8e-86 322.8 556 37.8
HanXRQChr13g0408281 Helianthus annuus HOM05D004295 ORTHO05D004901 9.7e-85 319.3 886 30.4
Psat0s5g0080 Pisum sativum HOM05D004295 ORTHO05D004901 2.2e-84 318.2 713 34.6
ECA240G3846 Erigeron canadensis HOM05D004295 ORTHO05D004901 4.1e-83 313.9 887 30.3
THA.LOC104810240 Tarenaya hassleriana HOM05D004295 ORTHO05D004901 2.0e-82 311.6 533 40.5
Peaxi162Scf00235g00827 Petunia axillaris HOM05D004295 ORTHO05D004901 2.1e-79 301.6 898 28.1
CiPaw.12G133900 Carya illinoinensis HOM05D004295 ORTHO05D004901 3.6e-79 300.8 641 34.5
Thhalv10011311m.g Eutrema salsugineum HOM05D004295 ORTHO05D004901 2.3e-78 298.1 466 39.3
Sp1g37440 Schrenkiella parvula HOM05D004295 ORTHO05D004901 1.2e-77 295.8 464 40.1
Aa31LG10G3720 Aethionema arabicum HOM05D005922 ORTHO05D006934 4.4e-77 293.9 467 40.3
CARHR040670 Cardamine hirsuta HOM05D004295 ORTHO05D004901 2.4e-75 288.1 473 37.6
CDE06G2452 Ceratophyllum demersum HOM05D004295 ORTHO05D004901 1.6e-74 285.4 578 37.0
HPP92_015777 Vanilla planifolia HOM05D004295 ORTHO05D004901 7.7e-74 283.1 910 28.9
Aa31LG8G7090 Aethionema arabicum HOM05D004295 ORTHO05D004901 1.3e-73 282.3 541 35.9
Hma1.2p1_1332F.1_g276160 Hydrangea macrophylla HOM05D004295 ORTHO05D004901 1.3e-73 282.3 518 37.5
AL1G58280 Arabidopsis lyrata HOM05D004295 ORTHO05D004901 2.9e-73 281.2 475 38.3
BcaB02g11165 Brassica carinata HOM05D004295 ORTHO05D004901 2.9e-73 281.2 478 39.3
AT1G50620 Arabidopsis thaliana HOM05D004295 ORTHO05D004901 8.5e-73 279.6 473 38.1
TPR.G18377 Trifolium pratense HOM05D004295 ORTHO05D004901 8.5e-73 279.6 594 34.5
Carub.0001s3966 Capsella rubella HOM05D004295 ORTHO05D004901 1.1e-72 279.3 467 38.3
Carub.0003s2023 Capsella rubella HOM05D004295 ORTHO05D004901 1.5e-72 278.9 494 38.3
BolC5t32077H Brassica oleracea HOM05D004295 ORTHO05D004901 1.9e-72 278.5 476 39.5
BcaC05g27404 Brassica carinata HOM05D004295 ORTHO05D004901 4.7e-71 273.9 476 39.3
C05p33520 Brassica napus HOM05D004295 ORTHO05D004901 8.0e-71 273.1 475 39.2
A05p20040 Brassica napus HOM05D004295 ORTHO05D004901 6.8e-70 270.0 475 38.1
BraA05t20910Z Brassica rapa HOM05D004295 ORTHO05D004901 6.8e-70 270.0 475 38.1
AT3G20280 Arabidopsis thaliana HOM05D004295 ORTHO05D004901 2.8e-68 264.6 486 38.5
Psat0s5g0040 Pisum sativum HOM05D004295 ORTHO05D004901 2.8e-68 264.6 743 30.4
Sp3g18310 Schrenkiella parvula HOM05D004295 ORTHO05D004901 2.3e-65 255.0 627 34.0
AL3G34000 Arabidopsis lyrata HOM05D004295 ORTHO05D004901 2.5e-64 251.5 467 38.5
ATR0561G279 Amborella trichopoda HOM05D004295 ORTHO05D004901 1.8e-62 245.4 889 27.1
BraA05t21740Z Brassica rapa HOM05D004295 ORTHO05D004901 4.0e-62 244.2 669 31.1
A05p28640 Brassica napus HOM05D004295 ORTHO05D004901 2.0e-61 241.9 466 36.9
Os06g0309000 Oryza sativa ssp. japonica HOM05D004295 ORTHO05D004901 2.2e-60 238.4 887 26.0
C05p44040 Brassica napus HOM05D004295 ORTHO05D004901 2.8e-60 238.0 649 31.1
BolC5t33127H Brassica oleracea HOM05D004295 ORTHO05D004901 2.8e-60 238.0 649 31.1
CARHR095900 Cardamine hirsuta HOM05D004295 ORTHO05D004901 6.3e-60 236.9 645 32.7
TAR626G0993 Trochodendron aralioides HOM05D004295 ORTHO05D004901 1.2e-55 222.6 503 33.6
SEGI_01734 Sequoiadendron giganteum HOM05D004295 ORTHO05D004901 3.6e-55 221.1 883 27.6
Zm00001eb189420 Zea mays HOM05D004295 ORTHO05D004901 9.8e-53 213.0 608 31.2
CARHR040590 Cardamine hirsuta HOM05D004295 ORTHO05D004901 4.9e-52 210.7 465 33.3
CDE04G3193 Ceratophyllum demersum HOM05D004295 ORTHO05D004901 1.1e-51 209.5 877 26.3
Zm00001eb252930 Zea mays HOM05D004295 ORTHO05D004901 7.0e-51 206.8 663 31.5
Actinidia37373 Actinidia chinensis HOM05D004295 ORTHO05D004901 6.6e-49 200.3 195 48.7
unitig_62.g23290 Utricularia gibba HOM05D004295 ORTHO05D004901 6.6e-49 200.3 900 26.2
Actinidia37372 Actinidia chinensis HOM05D004295 ORTHO05D004901 3.3e-48 198.0 417 36.5
GSVIVG01037732001 Vitis vinifera HOM05D004295 ORTHO05D004901 9.2e-43 179.9 285 41.1
Cpa.g.sc12.238 Carica papaya HOM05D004295 ORTHO05D004901 6.0e-42 177.2 294 40.8
CiPaw.11G195100 Carya illinoinensis HOM05D004295 ORTHO05D004901 5.8e-37 160.6 178 50.6
Nitab4.5_0002338g0050 Nicotiana tabacum HOM05D004295 ORTHO05D004901 3.9e-33 147.9 584 27.9
Mapoly0085s0079 Marchantia polymorpha HOM05D004295 ORTHO05D004901 9.6e-32 143.3 660 25.2
SMO356G0590 Selaginella moellendorffii HOM05D004295 ORTHO05D004901 2.8e-31 141.7 182 40.1
GSVIVG01037731001 Vitis vinifera HOM05D004295 ORTHO05D004901 2.6e-29 135.2 105 61.0
PSO302G0213 Papaver somniferum HOM05D004295 ORTHO05D004901 9.9e-29 133.3 186 44.6
PSO210G5678 Papaver somniferum HOM05D004295 ORTHO05D004901 6.4e-28 130.6 179 45.3
Pp3c24_16720 Physcomitrium patens HOM05D004295 ORTHO05D004901 1.4e-27 129.4 902 22.2
Oeu007995.1 Olea europaea HOM05D004295 ORTHO05D004901 6.0e-26 124.0 103 55.3
AagrBONN_evm.TU.Sc2ySwM_344.2809 Anthoceros agrestis HOM05D004295 ORTHO05D004901 9.6e-24 116.7 165 35.2
PGSC0003DMG400012847 Solanum tuberosum HOM05D004295 ORTHO05D004901 2.4e-22 112.1 133 48.9
TAR362G0197 Trochodendron aralioides HOM05D004295 ORTHO05D004901 3.8e-20 104.8 106 53.8
Pp3c10_22120 Physcomitrium patens HOM05D004295 ORTHO05D004901 2.8e-15 88.6 77 46.8
AagrBONN_evm.TU.Sc2ySwM_117.2763 Anthoceros agrestis HOM05D004295 ORTHO05D004901 1.1e-14 86.7 455 21.1
BcaB07g30968 Brassica carinata HOM05D004295 ORTHO05D004901 2.2e-12 79.0 84 47.6
AagrBONN_evm.TU.Sc2ySwM_117.2758 Anthoceros agrestis HOM05D059405 ORTHO05D004901 2.4e-11 75.5 428 24.3
Nn4g24851 Nelumbo nucifera HOM05D003564 ORTHO05D004901 1.6e-10 72.8 50 70.0
SEGI_19418 Sequoiadendron giganteum HOM05D004295 ORTHO05D004901 3.0e-09 68.6 70 47.1
AagrBONN_evm.TU.Sc2ySwM_340.1970 Anthoceros agrestis HOM05D000465 ORTHO05D000301 7.4e-08 63.9 127 40.2
BcaB07g30913 Brassica carinata HOM05D004295 ORTHO05D004901 1.6e-07 62.8 68 47.1
Pp3c20_14020 Physcomitrium patens HOM05D004295 ORTHO05D004901 1.6e-07 62.8 223 23.8
BcaB05g24188 Brassica carinata HOM05D004295 ORTHO05D004901 2.8e-07 62.0 50 60.0
AagrBONN_evm.TU.Sc2ySwM_228.2568 Anthoceros agrestis HOM05D000465 ORTHO05D000301 1.8e-06 59.3 116 36.2


User provided reference genes

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