Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR031G2328 Punica granatum HOM05D000916 ORTHO05D009274 1.2e-109 399.8 206 100.0
RcHm_v2.0_Chr1g0318771 Rosa chinensis HOM05D000916 ORTHO05D009274 6.7e-55 218.0 180 63.3
Nn2g15166 Nelumbo nucifera HOM05D000916 ORTHO05D009274 4.4e-54 215.3 185 61.1
Prupe.2G025000 Prunus persica HOM05D000916 ORTHO05D009274 7.4e-54 214.5 176 64.2
FvH4_7g01930 Fragaria vesca HOM05D000916 ORTHO05D009274 4.8e-53 211.8 180 63.3
FAN06G1234 Fragaria x ananassa HOM05D000916 ORTHO05D009274 4.8e-53 211.8 180 63.3
FAN03G1280 Fragaria x ananassa HOM05D000916 ORTHO05D009274 1.8e-52 209.9 180 63.3
Dinv07424 Davidia involucrata HOM05D000916 ORTHO05D009274 2.4e-52 209.5 181 62.4
COL.COLO4_12325 Corchorus olitorius HOM05D000916 ORTHO05D003833 7.7e-51 204.5 174 58.6
TAR636G0367 Trochodendron aralioides HOM05D000916 ORTHO05D009274 2.2e-50 203.0 143 69.9
arahy.Tifrunner.gnm1.ann1.W0KZJE Arachis hypogaea HOM05D000916 ORTHO05D009274 3.8e-50 202.2 175 58.9
CSS0046245 Camellia sinensis var. sinensis HOM05D000916 ORTHO05D009274 3.8e-50 202.2 128 74.2
Atru.chr11.2553 Acer truncatum HOM05D000916 ORTHO05D009274 5.0e-50 201.8 178 60.7
TAR636G3509 Trochodendron aralioides HOM05D000916 ORTHO05D009274 6.5e-50 201.4 175 61.1
Aqoxy2G00212 Aquilegia oxysepala HOM05D000916 ORTHO05D009274 2.5e-49 199.5 178 59.6
Eucgr.G03277 Eucalyptus grandis HOM05D000916 ORTHO05D009274 4.2e-49 198.7 195 59.0
TWI53G0499 Tripterygium wilfordii HOM05D000916 ORTHO05D009274 4.2e-49 198.7 181 58.0
AUR62023107 Chenopodium quinoa HOM05D000916 ORTHO05D009274 2.1e-48 196.4 184 54.9
Actinidia06285 Actinidia chinensis HOM05D000916 ORTHO05D009274 2.7e-48 196.1 131 71.0
GSVIVG01001443001 Vitis vinifera HOM05D000916 ORTHO05D009274 2.7e-48 196.1 127 73.2
Manes.07G012200 Manihot esculenta HOM05D000916 ORTHO05D009274 3.6e-48 195.7 177 58.2
PSO170G4961 Papaver somniferum HOM05D000916 ORTHO05D009274 6.1e-48 194.9 127 68.5
CiPaw.14G004300 Carya illinoinensis HOM05D000916 ORTHO05D009274 1.0e-47 194.1 175 57.7
Lj3g0014758 Lotus japonicus HOM05D000916 ORTHO05D009274 1.4e-47 193.7 175 57.7
Psat0s488g0040 Pisum sativum HOM05D000916 ORTHO05D009274 1.4e-47 193.7 177 55.9
Potri.001G259216 Populus trichocarpa HOM05D000916 ORTHO05D009274 1.4e-47 193.7 177 58.2
Potri.001G259900 Populus trichocarpa HOM05D000916 ORTHO05D009274 1.4e-47 193.7 177 58.2
VMungo1127G0561 Vigna mungo HOM05D000916 ORTHO05D009274 2.3e-47 193.0 177 55.9
Lsat_1_v5_gn_7_34400 Lactuca sativa HOM05D000916 ORTHO05D009274 5.2e-47 191.8 184 56.5
Potri.001G260600 Populus trichocarpa HOM05D000916 ORTHO05D009274 5.2e-47 191.8 123 72.4
Oeu049471.1 Olea europaea HOM05D000916 ORTHO05D009274 6.7e-47 191.4 183 57.9
Cpa.g.sc197.27 Carica papaya HOM05D000916 ORTHO05D009274 1.2e-46 190.7 179 57.5
MELO3C024009.2 Cucumis melo HOM05D000916 ORTHO05D009274 1.5e-46 190.3 177 51.4
Lj9P642T24 Lonicera japonica HOM05D000916 ORTHO05D009274 1.5e-46 190.3 129 69.0
Medtr0003s0480 Medicago truncatula HOM05D000916 ORTHO05D009274 4.4e-46 188.7 179 54.2
Peaxi162Scf01108g00212 Petunia axillaris HOM05D000916 ORTHO05D009274 4.4e-46 188.7 159 62.3
Glyma.09G226100 Glycine max HOM05D000916 ORTHO05D009274 1.3e-45 187.2 180 56.1
Gohir.D08G065100 Gossypium hirsutum HOM05D000916 ORTHO05D009274 1.3e-45 187.2 174 55.2
Nitab4.5_0002888g0050 Nicotiana tabacum HOM05D000916 ORTHO05D009274 2.2e-45 186.4 152 61.2
Rhsim07G0060200 Rhododendron simsii HOM05D000916 ORTHO05D009274 2.2e-45 186.4 125 69.6
CsaV3_3G031830 Cucumis sativus L. HOM05D000916 ORTHO05D009274 2.8e-45 186.0 177 52.5
Gorai.004G067400 Gossypium raimondii HOM05D000916 ORTHO05D009274 8.2e-45 184.5 174 56.3
Solyc01g088030.4 Solanum lycopersicum HOM05D000916 ORTHO05D009274 8.2e-45 184.5 150 62.7
FAN03G2260 Fragaria x ananassa HOM05D000916 ORTHO05D009274 1.1e-44 184.1 170 61.2
CAN.G410.4 Capsicum annuum HOM05D000916 ORTHO05D009274 2.4e-44 183.0 161 58.4
Sopen01g034920 Solanum pennellii HOM05D000916 ORTHO05D009274 2.4e-44 183.0 159 59.7
THA.LOC104826696 Tarenaya hassleriana HOM05D000916 ORTHO05D009274 2.4e-44 183.0 177 54.2
THA.LOC104826705 Tarenaya hassleriana HOM05D000916 ORTHO05D009274 2.4e-44 183.0 177 54.2
Ciclev10032919m.g Citrus clementina HOM05D000916 ORTHO05D009274 3.1e-44 182.6 128 68.0
Phvul.011G013300 Phaseolus vulgaris HOM05D000916 ORTHO05D009274 3.1e-44 182.6 177 52.5
Sed0025824 Sechium edule HOM05D000916 ORTHO05D009274 4.1e-44 182.2 177 53.1
Cc04_g14680 Coffea canephora HOM05D000916 ORTHO05D009274 7.0e-44 181.4 194 52.6
Migut.N01806 Erythranthe guttata HOM05D000916 ORTHO05D009274 7.0e-44 181.4 182 52.2
Rhsim07G0060800 Rhododendron simsii HOM05D000916 ORTHO05D009274 7.0e-44 181.4 208 52.9
PSO210G2598 Papaver somniferum HOM05D000916 ORTHO05D009274 2.0e-43 179.9 141 59.6
A02p27690 Brassica napus HOM05D000916 ORTHO05D009274 7.7e-43 177.9 174 52.9
BraA02t07808Z Brassica rapa HOM05D000916 ORTHO05D009274 7.7e-43 177.9 174 52.9
Sp2g08020 Schrenkiella parvula HOM05D000916 ORTHO05D009274 1.3e-42 177.2 176 52.3
MBI11_g21817_MAGBIO Magnolia biondii HOM05D000916 ORTHO05D009274 1.7e-42 176.8 126 68.3
HanXRQChr15g0480451 Helianthus annuus HOM05D000916 ORTHO05D009274 3.8e-42 175.6 179 55.3
Aa31LG9G13290 Aethionema arabicum HOM05D000916 ORTHO05D009274 5.0e-42 175.3 180 53.3
Carub.0008s0547 Capsella rubella HOM05D000916 ORTHO05D009274 5.0e-42 175.3 181 53.6
BcaB07g30592 Brassica carinata HOM05D000916 ORTHO05D009274 6.5e-42 174.9 176 53.4
Sc11g0009010 Simmondsia chinensis HOM05D000916 ORTHO05D009274 8.5e-42 174.5 181 54.7
PGSC0003DMG400006832 Solanum tuberosum HOM05D000916 ORTHO05D009274 8.5e-42 174.5 169 55.6
ClCG10G012070 Citrullus lanatus HOM05D000916 ORTHO05D009274 1.1e-41 174.1 177 50.8
vmacro13705 Vaccinium macrocarpon HOM05D000916 ORTHO05D009274 2.5e-41 172.9 230 45.7
THA.LOC104827433 Tarenaya hassleriana HOM05D000916 ORTHO05D009274 5.5e-41 171.8 172 53.5
AT5G43210 Arabidopsis thaliana HOM05D000916 ORTHO05D009274 1.2e-40 170.6 179 51.4
MSTRG.5047 Avicennia marina HOM05D000916 ORTHO05D009274 1.2e-40 170.6 182 52.2
Thhalv10003279m.g Eutrema salsugineum HOM05D000916 ORTHO05D009274 8.0e-40 167.9 175 53.7
SGA_v2.0_scaffold5G02941 Striga asiatica HOM05D000916 ORTHO05D009274 1.4e-39 167.2 130 60.0
EL10Ac2g04385 Beta vulgaris HOM05D000916 ORTHO05D009274 2.3e-39 166.4 175 50.3
DCAR_022368 Daucus carota HOM05D000916 ORTHO05D009274 2.0e-38 163.3 175 53.1
MD02G1299300 Malus domestica HOM05D000916 ORTHO05D009274 8.3e-37 157.9 100 72.0
Potri.001G260300 Populus trichocarpa HOM05D000916 ORTHO05D009274 2.4e-36 156.4 108 68.5
ATR0782G182 Amborella trichopoda HOM05D000916 ORTHO05D009274 5.9e-35 151.8 153 51.0
AUR62009428 Chenopodium quinoa HOM05D000916 ORTHO05D009274 5.9e-35 151.8 102 64.7
TAR636G0653 Trochodendron aralioides HOM05D000916 ORTHO05D009274 3.8e-34 149.1 138 58.0
Os11g0146550 Oryza sativa ssp. japonica HOM05D000916 ORTHO05D009274 1.1e-33 147.5 172 47.1
Hma1.2p1_0579F.1_g182540 Hydrangea macrophylla HOM05D000916 ORTHO05D009274 3.3e-33 146.0 88 73.9
CANSAT80G0736 Cannabis sativa HOM05D000916 ORTHO05D009274 4.2e-33 145.6 159 51.6
CDE11G0804 Ceratophyllum demersum HOM05D000916 ORTHO05D009274 4.2e-33 145.6 120 56.7
Sabra16G0159300 Salix brachista HOM05D000916 ORTHO05D009274 4.2e-33 145.6 97 68.0
Duzib133G0774 Durio zibethinus HOM05D000916 ORTHO05D009274 1.2e-32 144.1 174 46.6
Gohir.A08G055800 Gossypium hirsutum HOM05D000916 ORTHO05D009274 6.1e-32 141.7 97 67.0
RcHm_v2.0_Chr1g0318641 Rosa chinensis HOM05D000916 ORTHO05D009274 1.0e-31 141.0 126 61.9
Zm00001eb405020 Zea mays HOM05D000916 ORTHO05D009274 1.8e-31 140.2 173 48.6
Ah.16g100710 Amaranthus hybridus HOM05D000916 ORTHO05D009274 2.6e-30 136.3 98 59.2
Cfa010832 Carpinus fangiana HOM05D000916 ORTHO05D009274 1.1e-28 131.0 112 62.5
FAN01G3008 Fragaria x ananassa HOM05D000916 ORTHO05D009274 9.2e-28 127.9 115 63.5
Lalb_Chr03g0024151 Lupinus albus HOM05D000916 ORTHO05D009274 2.7e-27 126.3 100 58.0
AL8G17370 Arabidopsis lyrata HOM05D000916 ORTHO05D009274 4.3e-25 119.0 83 68.7
SEGI_20425 Sequoiadendron giganteum HOM05D000916 ORTHO05D009274 4.0e-23 112.5 142 45.8
Mapoly0059s0058 Marchantia polymorpha HOM05D000916 ORTHO05D009274 6.4e-21 105.1 120 43.3
AagrBONN_evm.TU.Sc2ySwM_117.2289 Anthoceros agrestis HOM05D000916 ORTHO05D009274 9.2e-20 101.3 138 41.3
Haze_03122 Corylus avellana HOM05D000916 ORTHO05D009274 4.6e-19 99.0 103 58.3
Nitab4.5_0006695g0040 Nicotiana tabacum HOM05D000916 ORTHO05D009274 1.9e-17 93.6 175 37.1
Os12g0143300 Oryza sativa ssp. japonica HOM05D000916 ORTHO05D009274 2.1e-16 90.1 110 48.2
AagrBONN_evm.TU.Sc2ySwM_117.2287 Anthoceros agrestis HOM05D000916 ORTHO05D009274 1.1e-15 87.8 159 39.0
RcHm_v2.0_Chr1g0318631 Rosa chinensis HOM05D000916 ORTHO05D009274 1.8e-15 87.0 74 54.1
Atru.chr11.2549 Acer truncatum HOM05D000916 ORTHO05D009274 2.3e-15 86.7 50 76.0
CBR_g31178 Chara braunii HOM05D002376 ORTHO05D004654 2.5e-09 66.6 85 44.7
AagrBONN_evm.TU.Sc2ySwM_369.511 Anthoceros agrestis HOM05D002376 ORTHO05D004654 2.8e-08 63.2 78 41.0
DCAR_004798 Daucus carota HOM05D002376 ORTHO05D004654 1.4e-07 60.8 83 37.3
HPP92_022854 Vanilla planifolia HOM05D003671 ORTHO05D004654 1.8e-07 60.5 83 38.6
Mapoly0004s0007 Marchantia polymorpha HOM05D002376 ORTHO05D004654 2.3e-07 60.1 84 38.1
SMO364G0016 Selaginella moellendorffii HOM05D002376 ORTHO05D004654 2.3e-07 60.1 96 33.3
Cpa.g.sc2.324 Carica papaya HOM05D002376 ORTHO05D004654 4.0e-07 59.3 74 39.2
Lalb_Chr15g0085961 Lupinus albus HOM05D002376 ORTHO05D004654 4.0e-07 59.3 83 37.3
Oeu011367.1 Olea europaea HOM05D002376 ORTHO05D004654 4.0e-07 59.3 88 39.8
Cre07.g351500 Chlamydomonas reinhardtii HOM05D002376 ORTHO05D004654 5.2e-07 58.9 75 38.7
PRCOL_00000864 Prasinoderma coloniale HOM05D002376 ORTHO05D004654 5.2e-07 58.9 93 36.6
Cfa023829 Carpinus fangiana HOM05D002376 ORTHO05D004654 6.8e-07 58.5 77 41.6
Lalb_Chr20g0117351 Lupinus albus HOM05D002376 ORTHO05D004654 6.8e-07 58.5 83 36.1
TAR623G0587 Trochodendron aralioides HOM05D002376 ORTHO05D004654 6.8e-07 58.5 97 33.0
Aqoxy2G00731 Aquilegia oxysepala HOM05D002376 ORTHO05D004654 8.9e-07 58.2 85 35.3
Ciclev10001469m.g Citrus clementina HOM05D002376 ORTHO05D004654 8.9e-07 58.2 105 32.4
SGA_v2.0_scaffold6G03299 Striga asiatica HOM05D002376 ORTHO05D004654 8.9e-07 58.2 83 37.3
CAN.G473.25 Capsicum annuum HOM05D002376 ORTHO05D004654 1.2e-06 57.8 75 40.0
CDE04G2750 Ceratophyllum demersum HOM05D002376 ORTHO05D004654 1.2e-06 57.8 83 36.1
PGR119G0696 Punica granatum HOM05D002376 ORTHO05D004654 1.2e-06 57.8 74 39.2
Zm00001eb303730 Zea mays HOM05D002376 ORTHO05D004654 1.2e-06 57.8 68 38.2
HanXRQChr01g0013301 Helianthus annuus HOM05D002376 ORTHO05D004654 1.5e-06 57.4 89 37.1
Os07g0230500 Oryza sativa ssp. japonica HOM05D002376 ORTHO05D004654 1.5e-06 57.4 67 38.8
Pp3c10_1920 Physcomitrium patens HOM05D002376 ORTHO05D004654 1.5e-06 57.4 83 38.6
unitig_747.g21450 Utricularia gibba HOM05D002376 ORTHO05D004654 1.5e-06 57.4 85 38.8
CANSAT54G2949 Cannabis sativa HOM05D002376 ORTHO05D004654 2.0e-06 57.0 83 36.1
AUR62009726 Chenopodium quinoa HOM05D002376 ORTHO05D004654 2.0e-06 57.0 86 34.9
MD02G1299100 Malus domestica HOM05D000916 ORTHO05D009274 2.0e-06 57.0 38 71.1
Medtr3g466410 Medicago truncatula HOM05D002376 ORTHO05D004654 2.0e-06 57.0 83 36.1
Peaxi162Scf01078g00415 Petunia axillaris HOM05D002376 ORTHO05D004654 2.0e-06 57.0 75 40.0
Hund05050 Selenicereus undatus HOM05D002376 ORTHO05D004654 2.0e-06 57.0 81 37.0
TPR.G24962 Trifolium pratense HOM05D002376 ORTHO05D004654 2.0e-06 57.0 83 36.1
MSTRG.12701 Avicennia marina HOM05D002376 ORTHO05D004654 2.6e-06 56.6 85 36.5
PSO339G0904 Papaver somniferum HOM05D002376 ORTHO05D004654 2.6e-06 56.6 89 36.0
QL01p025227 Quercus lobata HOM05D002376 ORTHO05D004654 2.6e-06 56.6 83 36.1
Ca_15029_v3 Cicer arietinum L. HOM05D002376 ORTHO05D004654 3.4e-06 56.2 83 36.1
Haze_24447 Corylus avellana HOM05D002376 ORTHO05D004654 3.4e-06 56.2 83 34.9
Dinv28716 Davidia involucrata HOM05D002376 ORTHO05D004654 3.4e-06 56.2 83 34.9
Duzib168G1857 Durio zibethinus HOM05D002376 ORTHO05D004654 3.4e-06 56.2 83 36.1
Migut.D00832 Erythranthe guttata HOM05D002376 ORTHO05D004654 3.4e-06 56.2 83 36.1
Eucgr.J01841 Eucalyptus grandis HOM05D002376 ORTHO05D004654 3.4e-06 56.2 86 34.9
FvH4_3g40230 Fragaria vesca HOM05D002376 ORTHO05D004654 3.4e-06 56.2 88 37.5
FAN11G3581 Fragaria x ananassa HOM05D002376 ORTHO05D004654 3.4e-06 56.2 88 37.5
FAN16G2868 Fragaria x ananassa HOM05D002376 ORTHO05D004654 3.4e-06 56.2 88 37.5
FAN21G3096 Fragaria x ananassa HOM05D002376 ORTHO05D004654 3.4e-06 56.2 88 37.5
FAN25G0776 Fragaria x ananassa HOM05D002376 ORTHO05D004654 3.4e-06 56.2 88 37.5
Hma1.2p1_1637F.1_g294890 Hydrangea macrophylla HOM05D002376 ORTHO05D004654 3.4e-06 56.2 83 34.9
Lj6g0027008 Lotus japonicus HOM05D002376 ORTHO05D004654 3.4e-06 56.2 83 36.1
Nitab4.5_0000734g0130 Nicotiana tabacum HOM05D002376 ORTHO05D004654 3.4e-06 56.2 75 38.7
RcHm_v2.0_Chr5g0072441 Rosa chinensis HOM05D002376 ORTHO05D004654 3.4e-06 56.2 88 37.5
Aa31LG5G6350 Aethionema arabicum HOM05D002376 ORTHO05D004654 4.4e-06 55.8 83 34.9
arahy.Tifrunner.gnm1.ann1.WIJ2N1 Arachis hypogaea HOM05D002376 ORTHO05D004654 4.4e-06 55.8 83 36.1
EL10Ac7g15858 Beta vulgaris HOM05D002376 ORTHO05D004654 4.4e-06 55.8 119 30.3
MELO3C020503.2 Cucumis melo HOM05D002376 ORTHO05D004654 4.4e-06 55.8 83 36.1
Nitab4.5_0002601g0080 Nicotiana tabacum HOM05D002376 ORTHO05D004654 4.4e-06 55.8 75 38.7
Rhsim01G0242200 Rhododendron simsii HOM05D002376 ORTHO05D004654 4.4e-06 55.8 83 34.9
Solyc09g031790.4 Solanum lycopersicum HOM05D002376 ORTHO05D004654 4.4e-06 55.8 75 38.7
ClCG03G000240 Citrullus lanatus HOM05D002376 ORTHO05D004654 5.8e-06 55.5 72 38.9
Sed0022472 Sechium edule HOM05D002376 ORTHO05D004654 5.8e-06 55.5 83 36.1
Atru.chr1.2538 Acer truncatum HOM05D002376 ORTHO05D004654 7.5e-06 55.1 83 34.9
Actinidia11613 Actinidia chinensis HOM05D000055 ORTHO05D000057 7.5e-06 55.1 67 37.3
Aqoxy2G00736 Aquilegia oxysepala HOM05D002376 ORTHO05D004654 7.5e-06 55.1 83 36.1
BcaB01g04112 Brassica carinata HOM05D002376 ORTHO05D004654 7.5e-06 55.1 89 36.0
C04p59280 Brassica napus HOM05D002376 ORTHO05D004654 7.5e-06 55.1 83 33.7
BolC4t27433H Brassica oleracea HOM05D002376 ORTHO05D004654 7.5e-06 55.1 83 33.7
MD11G1056400 Malus domestica HOM05D002376 ORTHO05D004654 7.5e-06 55.1 75 37.3
Potri.013G155900 Populus trichocarpa HOM05D002376 ORTHO05D004654 7.5e-06 55.1 83 34.9
Potri.019G127600 Populus trichocarpa HOM05D002376 ORTHO05D004654 7.5e-06 55.1 83 33.7
Prupe.6G043600 Prunus persica HOM05D002376 ORTHO05D004654 7.5e-06 55.1 75 37.3
Prupe.6G045800 Prunus persica HOM05D002376 ORTHO05D004654 7.5e-06 55.1 75 37.3
Sabra13G0125800 Salix brachista HOM05D002376 ORTHO05D004654 7.5e-06 55.1 83 34.9
Sopen09g014780 Solanum pennellii HOM05D002376 ORTHO05D004654 7.5e-06 55.1 75 38.7
TAR369G0569 Trochodendron aralioides HOM05D002376 ORTHO05D004654 7.5e-06 55.1 83 34.9
Actinidia23178 Actinidia chinensis HOM05D002376 ORTHO05D004654 9.9e-06 54.7 83 33.7
MSTRG.21249 Avicennia marina HOM05D002376 ORTHO05D004654 9.9e-06 54.7 86 34.9
BcaB06g28361 Brassica carinata HOM05D002376 ORTHO05D004654 9.9e-06 54.7 83 33.7
BcaC02g08025 Brassica carinata HOM05D002376 ORTHO05D004654 9.9e-06 54.7 83 33.7
COL.COLO4_11190 Corchorus olitorius HOM05D002376 ORTHO05D004654 9.9e-06 54.7 72 37.5
Gohir.1Z049629 Gossypium hirsutum HOM05D002376 ORTHO05D004654 9.9e-06 54.7 77 36.4
Gohir.D04G000035 Gossypium hirsutum HOM05D002376 ORTHO05D004654 9.9e-06 54.7 77 36.4
Gorai.012G000400 Gossypium raimondii HOM05D002376 ORTHO05D004654 9.9e-06 54.7 77 36.4
PSO384G2467 Papaver somniferum HOM05D002376 ORTHO05D004654 9.9e-06 54.7 83 36.1
Thecc.09G361600 Theobroma cacao HOM05D002376 ORTHO05D004654 9.9e-06 54.7 72 37.5


User provided reference genes

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