Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR031G2086 Punica granatum HOM05D007125 ORTHO05D008766 0.0e+00 2331.6 1182 100.0
Haze_20950 Corylus avellana HOM05D007125 ORTHO05D008766 4.0e-309 1065.1 1243 48.5
CiPaw.09G206100 Carya illinoinensis HOM05D007125 ORTHO05D008766 1.4e-301 1040.0 1253 49.9
Potri.006G096400 Populus trichocarpa HOM05D007125 ORTHO05D008766 3.7e-299 1031.9 1232 47.9
COL.COLO4_14596 Corchorus olitorius HOM05D007125 ORTHO05D008766 1.1e-295 1020.4 1228 49.9
Sabra06G0074100 Salix brachista HOM05D007125 ORTHO05D008766 7.3e-295 1017.7 1237 47.3
Duzib093G0828 Durio zibethinus HOM05D007125 ORTHO05D008766 1.8e-293 1013.1 1231 47.5
Thecc.05G022200 Theobroma cacao HOM05D007125 ORTHO05D008766 1.7e-291 1006.5 1235 48.2
TWI77G0961 Tripterygium wilfordii HOM05D007125 ORTHO05D008766 3.5e-289 998.8 1238 46.4
CANSAT35G1716 Cannabis sativa HOM05D007125 ORTHO05D008766 5.8e-284 981.5 1208 47.6
CsaV3_4G025990 Cucumis sativus L. HOM05D007125 ORTHO05D008766 1.7e-275 953.4 1233 45.6
ClCG04G007250 Citrullus lanatus HOM05D007125 ORTHO05D008766 1.3e-267 927.2 1237 44.6
Cpa.g.sc56.115 Carica papaya HOM05D007125 ORTHO05D008766 2.2e-267 926.4 813 57.4
Actinidia29131 Actinidia chinensis HOM05D007125 ORTHO05D008766 1.1e-266 924.1 1244 44.1
TAR623G0133 Trochodendron aralioides HOM05D007125 ORTHO05D008766 1.0e-264 917.5 1273 43.6
Sed0001650 Sechium edule HOM05D007125 ORTHO05D008766 1.7e-264 916.8 1101 46.2
Ciclev10013588m.g Citrus clementina HOM05D007125 ORTHO05D008766 2.5e-263 912.9 941 52.5
Dinv35513 Davidia involucrata HOM05D007125 ORTHO05D008766 3.6e-262 909.1 1250 43.7
Aqoxy1G00714 Aquilegia oxysepala HOM05D007125 ORTHO05D008766 3.3e-255 885.9 1295 41.5
PSO384G0252 Papaver somniferum HOM05D007125 ORTHO05D008766 7.1e-250 868.2 1249 41.2
arahy.Tifrunner.gnm1.ann1.A1GI61 Arachis hypogaea HOM05D007125 ORTHO05D008766 3.9e-248 862.4 1277 41.3
Lj1g0008640 Lotus japonicus HOM05D007125 ORTHO05D008766 1.6e-246 857.1 1240 42.6
THA.LOC104823281 Tarenaya hassleriana HOM05D007125 ORTHO05D008766 4.0e-245 852.4 1200 41.5
GSVIVG01034011001 Vitis vinifera HOM05D007125 ORTHO05D008766 6.9e-245 851.7 929 50.5
Phvul.008G107900 Phaseolus vulgaris HOM05D007125 ORTHO05D008766 2.6e-244 849.7 1205 42.8
vmacro20236 Vaccinium macrocarpon HOM05D007125 ORTHO05D008766 9.9e-244 847.8 846 53.5
arahy.Tifrunner.gnm1.ann1.8EY2MC Arachis hypogaea HOM05D007125 ORTHO05D008766 2.9e-243 846.3 1223 42.2
Lj2A79T37 Lonicera japonica HOM05D007125 ORTHO05D008766 8.4e-243 844.7 1239 42.2
Glyma.07G144800 Glycine max HOM05D007125 ORTHO05D008766 1.4e-237 827.4 1164 42.5
Nn2g11366 Nelumbo nucifera HOM05D007125 ORTHO05D008766 1.4e-237 827.4 1221 41.2
Hma1.2p1_0763F.1_g214640 Hydrangea macrophylla HOM05D007125 ORTHO05D008766 6.9e-237 825.1 1029 47.2
Ca_09172_v3 Cicer arietinum L. HOM05D007125 ORTHO05D008766 8.4e-235 818.1 1241 41.3
MBI05_g03452_MAGBIO Magnolia biondii HOM05D007125 ORTHO05D008766 2.7e-233 813.1 820 52.4
BcaC09g48007 Brassica carinata HOM05D007125 ORTHO05D008766 1.3e-232 810.8 1174 41.1
BraA01t04316Z Brassica rapa HOM05D007125 ORTHO05D008766 1.8e-229 800.4 1211 40.3
AL3G20150 Arabidopsis lyrata HOM05D007125 ORTHO05D008766 5.3e-229 798.9 1208 41.3
BolC1t05475H Brassica oleracea HOM05D007125 ORTHO05D008766 6.9e-229 798.5 1189 40.2
MELO3C003224.2 Cucumis melo HOM05D007125 ORTHO05D008766 1.5e-228 797.3 1230 41.1
CARHR083450 Cardamine hirsuta HOM05D007125 ORTHO05D008766 1.6e-225 787.3 912 47.6
Carub.0003s0824 Capsella rubella HOM05D007125 ORTHO05D008766 3.3e-223 779.6 1174 41.1
AT3G09080 Arabidopsis thaliana HOM05D007125 ORTHO05D008766 4.8e-222 775.8 1180 41.9
DCAR_024035 Daucus carota HOM05D007125 ORTHO05D008766 1.3e-219 767.7 1266 38.5
Sopen09g007020 Solanum pennellii HOM05D007125 ORTHO05D008766 3.0e-216 756.5 848 48.8
Solyc09g013160.3 Solanum lycopersicum HOM05D007125 ORTHO05D008766 2.6e-215 753.4 851 48.6
Nitab4.5_0000008g0740 Nicotiana tabacum HOM05D007125 ORTHO05D008766 4.1e-213 746.1 823 48.6
Lalb_Chr03g0042991 Lupinus albus HOM05D007125 ORTHO05D008766 9.1e-213 745.0 1110 41.9
Lsat_1_v5_gn_8_99881 Lactuca sativa HOM05D007125 ORTHO05D008766 2.6e-212 743.4 930 47.5
Nitab4.5_0009193g0010 Nicotiana tabacum HOM05D007125 ORTHO05D008766 3.8e-211 739.6 843 47.6
VMungo1383G2599 Vigna mungo HOM05D007125 ORTHO05D008766 1.9e-210 737.3 1112 40.3
Gohir.D09G158900 Gossypium hirsutum HOM05D007125 ORTHO05D008766 3.9e-208 729.6 1025 42.7
Psat3g131480 Pisum sativum HOM05D007125 ORTHO05D008766 3.9e-208 729.6 1239 38.7
Oeu044362.1 Olea europaea HOM05D007125 ORTHO05D008766 9.7e-207 724.9 1197 39.5
ATR0618G048 Amborella trichopoda HOM05D007125 ORTHO05D008766 1.7e-206 724.2 1094 40.0
Gorai.006G180600 Gossypium raimondii HOM05D007125 ORTHO05D008766 5.9e-204 715.7 1025 42.5
Manes.08G087700 Manihot esculenta HOM05D007125 ORTHO05D008766 2.5e-202 710.3 974 44.0
Migut.J00225 Erythranthe guttata HOM05D007125 ORTHO05D008766 7.2e-202 708.8 1221 38.2
TPR.G1550 Trifolium pratense HOM05D007125 ORTHO05D008766 5.2e-200 702.6 723 52.3
Sp3g07530 Schrenkiella parvula HOM05D007125 ORTHO05D008766 1.3e-195 688.0 1118 38.2
ECA236G2625 Erigeron canadensis HOM05D007125 ORTHO05D008766 3.5e-188 663.3 1206 36.7
SalBow5G1282 Salvia bowleyana HOM05D007125 ORTHO05D008766 1.0e-187 661.8 1188 38.1
HanXRQChr04g0102021 Helianthus annuus HOM05D007125 ORTHO05D008766 4.0e-176 623.2 655 49.8
Aa31LG3G1610 Aethionema arabicum HOM05D007125 ORTHO05D008766 8.3e-174 615.5 1177 36.5
Atru.chr8.2198 Acer truncatum HOM05D007125 ORTHO05D008766 2.0e-172 610.9 831 44.8
Thhalv10022253m.g Eutrema salsugineum HOM05D007125 ORTHO05D008766 3.7e-166 590.1 1185 36.5
CDE04G1007 Ceratophyllum demersum HOM05D007125 ORTHO05D008766 4.3e-162 576.6 1168 33.7
Pp3c9_8840 Physcomitrium patens HOM05D007125 ORTHO05D008766 1.2e-159 568.5 769 42.4
Gohir.A09G163400 Gossypium hirsutum HOM05D007125 ORTHO05D008766 5.6e-154 549.7 826 42.4
Mapoly0113s0048 Marchantia polymorpha HOM05D007125 ORTHO05D008766 2.8e-153 547.4 870 37.1
SMO358G0023 Selaginella moellendorffii HOM05D007125 ORTHO05D008766 4.7e-153 546.6 917 35.8
Pp3c3_16960 Physcomitrium patens HOM05D007125 ORTHO05D008766 8.4e-142 509.2 751 39.0
Sc01g0006770 Simmondsia chinensis HOM05D007125 ORTHO05D008766 2.7e-140 504.2 513 53.6
AagrBONN_evm.TU.Sc2ySwM_228.1352 Anthoceros agrestis HOM05D007125 ORTHO05D008766 5.6e-138 496.5 934 35.4
MSTRG.19028 Avicennia marina HOM05D007125 ORTHO05D008766 3.2e-133 480.7 782 39.1
CSS0003995 Camellia sinensis var. sinensis HOM05D007125 ORTHO05D008766 6.0e-132 476.5 804 39.1
PGSC0003DMG400020348 Solanum tuberosum HOM05D007125 ORTHO05D008766 5.5e-125 453.4 488 49.2
Medtr7g066770 Medicago truncatula HOM05D007125 ORTHO05D008766 1.1e-122 445.7 457 52.7
Cre01.g034600 Chlamydomonas reinhardtii HOM05D007125 ORTHO05D008766 7.5e-74 283.5 749 32.6
Medtr7g066750 Medicago truncatula HOM05D007125 ORTHO05D008766 1.4e-67 262.7 596 33.1
SEGI_28201 Sequoiadendron giganteum HOM05D007125 ORTHO05D008766 5.7e-66 257.3 343 41.1
Atru.chr8.2197 Acer truncatum HOM05D007125 ORTHO05D008766 3.3e-61 241.5 189 60.8
MCO08G172 Micromonas commoda HOM05D007125 ORTHO05D008766 8.3e-57 226.9 888 25.2
HanXRQChr04g0102011 Helianthus annuus HOM05D007125 ORTHO05D008766 1.0e-46 193.4 590 29.3
arahy.Tifrunner.gnm1.ann1.KE62B1 Arachis hypogaea HOM05D007125 ORTHO05D008766 2.5e-45 188.7 194 50.0
arahy.Tifrunner.gnm1.ann1.IUS8SN Arachis hypogaea HOM05D007125 ORTHO05D008766 7.3e-45 187.2 194 49.5
arahy.Tifrunner.gnm1.ann1.KIE2XR Arachis hypogaea HOM05D007125 ORTHO05D008766 2.8e-44 185.3 194 49.5
Sc01g0006790 Simmondsia chinensis HOM05D007125 ORTHO05D008766 1.1e-40 173.3 565 30.3
Eucgr.B02785 Eucalyptus grandis HOM05D007125 ORTHO05D008766 6.0e-39 167.5 342 35.4
unitig_27.g24821 Utricularia gibba HOM05D007125 ORTHO05D008766 8.6e-38 163.7 571 26.1
Cfa025266 Carpinus fangiana HOM05D007125 ORTHO05D008766 2.1e-31 142.5 612 26.0
MSTRG.19029 Avicennia marina HOM05D007125 ORTHO05D008766 4.6e-31 141.4 101 68.3
Sc01g0006780 Simmondsia chinensis HOM05D007125 ORTHO05D008766 2.8e-28 132.1 103 61.2
BolC1t05511H Brassica oleracea HOM05D007125 ORTHO05D008766 9.9e-26 123.6 131 50.4
VMungo1383G1324 Vigna mungo HOM05D007125 ORTHO05D008766 4.2e-24 118.2 88 65.9
Actinidia13779 Actinidia chinensis HOM05D007125 ORTHO05D008766 1.2e-23 116.7 123 52.8
Lalb_Chr03g0042981 Lupinus albus HOM05D007125 ORTHO05D008766 3.5e-23 115.2 75 73.3
CSS0006466 Camellia sinensis var. sinensis HOM05D007125 ORTHO05D008766 1.0e-22 113.6 90 65.6
PRCOL_00001248 Prasinoderma coloniale HOM05D009332 ORTHO05D011893 1.4e-19 103.2 587 23.9
TPR.G40809 Trifolium pratense HOM05D007125 ORTHO05D008766 1.5e-18 99.8 393 28.2
MBI05_g03454_MAGBIO Magnolia biondii HOM05D007125 ORTHO05D008766 7.6e-18 97.4 226 31.9
MCO12G477 Micromonas commoda HOM05D009332 ORTHO05D011893 1.4e-16 93.2 594 24.9
unitig_27.g24820 Utricularia gibba HOM05D007125 ORTHO05D008766 1.3e-14 86.7 78 51.3
MCO11G281 Micromonas commoda HOM05D015011 ORTHO05D017325 5.6e-13 81.3 717 22.6
MBI11_g31733_MAGBIO Magnolia biondii HOM05D007125 ORTHO05D008766 6.2e-12 77.8 60 53.3
PRCOL_00005200 Prasinoderma coloniale HOM05D009332 ORTHO05D011893 6.9e-11 74.3 183 31.7
TPR.G1592 Trifolium pratense HOM05D007125 ORTHO05D008766 4.5e-10 71.6 113 36.3
PRCOL_00001262 Prasinoderma coloniale HOM05D009332 ORTHO05D011893 7.6e-10 70.9 217 26.3
BcaC09g47967 Brassica carinata HOM05D007125 ORTHO05D008766 1.0e-09 70.5 65 53.8
Eucgr.B02786 Eucalyptus grandis HOM05D001641 ORTHO05D001667 2.2e-09 69.3 116 37.9
Hma1.2p1_0763F.1_g214650 Hydrangea macrophylla HOM05D007125 ORTHO05D008766 6.5e-09 67.8 202 27.7
CARHR083440 Cardamine hirsuta HOM05D007125 ORTHO05D008766 4.2e-08 65.1 165 29.1
MCO09G563 Micromonas commoda HOM05D009332 ORTHO05D011893 1.2e-07 63.5 175 25.7
Pp3c19_1870 Physcomitrium patens HOM05D015011 ORTHO05D017325 1.2e-07 63.5 196 26.0
Sed0021710 Sechium edule HOM05D007125 ORTHO05D008766 2.7e-07 62.4 69 52.2
Cre14.g613400 Chlamydomonas reinhardtii HOM05D037949 ORTHO05D034420 3.0e-06 58.9 200 26.0
Cre12.g489750 Chlamydomonas reinhardtii HOM05D015011 ORTHO05D017325 3.9e-06 58.5 254 20.5
Nn1g08659 Nelumbo nucifera HOM05D000526 ORTHO05D000956 6.7e-06 57.8 240 24.6
QL10p018959 Quercus lobata HOM05D000526 ORTHO05D000956 6.7e-06 57.8 136 28.7


User provided reference genes

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