Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR031G1979 Punica granatum HOM05D005990 ORTHO05D007908 5.6e-190 667.5 360 100.0
QL08p018038 Quercus lobata HOM05D005990 ORTHO05D007908 3.6e-136 488.8 360 75.6
Cfa020505 Carpinus fangiana HOM05D005990 ORTHO05D007908 1.0e-135 487.3 363 75.2
Potri.001G406700 Populus trichocarpa HOM05D005990 ORTHO05D007908 8.8e-135 484.2 361 75.1
Manes.03G116500 Manihot esculenta HOM05D005990 ORTHO05D007908 2.0e-134 483.0 347 79.3
TAR626G1157 Trochodendron aralioides HOM05D005990 ORTHO05D007908 2.6e-134 482.6 361 76.5
CiPaw.11G176500 Carya illinoinensis HOM05D005990 ORTHO05D007908 5.7e-134 481.5 365 75.6
Dinv22366 Davidia involucrata HOM05D005990 ORTHO05D007908 5.7e-134 481.5 314 83.8
Nn1g06745 Nelumbo nucifera HOM05D005990 ORTHO05D007908 9.7e-134 480.7 361 75.3
FvH4_3g20940 Fragaria vesca HOM05D005990 ORTHO05D007908 1.2e-131 473.8 369 73.4
GSVIVG01014430001 Vitis vinifera HOM05D005990 ORTHO05D007908 2.0e-131 473.0 356 75.0
FAN11G3728 Fragaria x ananassa HOM05D005990 ORTHO05D007908 3.5e-131 472.2 363 73.8
Actinidia35278 Actinidia chinensis HOM05D005990 ORTHO05D007908 4.5e-131 471.9 365 72.9
CSS0030462 Camellia sinensis var. sinensis HOM05D005990 ORTHO05D007908 4.5e-131 471.9 345 76.8
RcHm_v2.0_Chr5g0035361 Rosa chinensis HOM05D005990 ORTHO05D007908 5.9e-131 471.5 297 84.8
Gohir.D13G148400 Gossypium hirsutum HOM05D005990 ORTHO05D007908 7.7e-131 471.1 313 81.5
Gorai.013G166200 Gossypium raimondii HOM05D005990 ORTHO05D007908 7.7e-131 471.1 285 87.4
Prupe.4G189900 Prunus persica HOM05D005990 ORTHO05D007908 1.0e-130 470.7 363 73.0
CsaV3_3G005970 Cucumis sativus L. HOM05D005990 ORTHO05D007908 1.7e-130 469.9 361 72.6
MELO3C016553.2 Cucumis melo HOM05D005990 ORTHO05D007908 2.9e-130 469.2 361 72.6
Gohir.A13G143600 Gossypium hirsutum HOM05D005990 ORTHO05D007908 3.8e-130 468.8 313 81.2
ClCG10G006520 Citrullus lanatus HOM05D005990 ORTHO05D007908 6.5e-130 468.0 361 72.9
COL.COLO4_09478 Corchorus olitorius HOM05D005990 ORTHO05D007908 6.5e-130 468.0 344 74.4
Duzib213G0189 Durio zibethinus HOM05D005990 ORTHO05D007908 1.1e-129 467.2 355 75.5
Sabra16G0268100 Salix brachista HOM05D005990 ORTHO05D007908 1.5e-129 466.8 344 75.3
Sabra16G0270400 Salix brachista HOM05D005990 ORTHO05D007908 1.5e-129 466.8 344 75.3
RhsimUnG0258900 Rhododendron simsii HOM05D005990 ORTHO05D007908 3.2e-129 465.7 347 74.6
Lj3g0001925 Lotus japonicus HOM05D005990 ORTHO05D007908 9.4e-129 464.2 349 76.2
Lsat_1_v5_gn_5_6860 Lactuca sativa HOM05D005990 ORTHO05D007908 1.2e-128 463.8 362 72.4
Sed0021962 Sechium edule HOM05D005990 ORTHO05D007908 1.6e-128 463.4 361 71.7
CANSAT11G2493 Cannabis sativa HOM05D005990 ORTHO05D007908 8.0e-128 461.1 364 72.0
Thecc.07G071400 Theobroma cacao HOM05D005990 ORTHO05D007908 1.4e-127 460.3 285 86.0
Aqoxy4G01398 Aquilegia oxysepala HOM05D005990 ORTHO05D007908 3.0e-127 459.1 362 71.8
Cpa.g.sc80.114 Carica papaya HOM05D005990 ORTHO05D007908 4.0e-127 458.8 347 76.4
AUR62015602 Chenopodium quinoa HOM05D005990 ORTHO05D007908 1.2e-126 457.2 337 76.0
ECA246G2706 Erigeron canadensis HOM05D005990 ORTHO05D007908 1.2e-126 457.2 290 83.4
Atru.chr2.2820 Acer truncatum HOM05D005990 ORTHO05D007908 2.0e-126 456.4 346 76.3
MD11G1237300 Malus domestica HOM05D005990 ORTHO05D007908 3.4e-126 455.7 329 77.2
HanXRQChr05g0156471 Helianthus annuus HOM05D005990 ORTHO05D007908 4.4e-126 455.3 335 74.3
Sc16g0006780 Simmondsia chinensis HOM05D005990 ORTHO05D007908 4.4e-126 455.3 359 71.0
AUR62029313 Chenopodium quinoa HOM05D005990 ORTHO05D007908 5.7e-126 454.9 346 74.0
Solyc07g063570.4 Solanum lycopersicum HOM05D005990 ORTHO05D007908 5.7e-126 454.9 289 82.7
Nitab4.5_0008686g0040 Nicotiana tabacum HOM05D005990 ORTHO05D007908 7.5e-126 454.5 329 75.4
Sopen07g031750 Solanum pennellii HOM05D005990 ORTHO05D007908 7.5e-126 454.5 289 82.7
Glyma.06G254100 Glycine max HOM05D005990 ORTHO05D007908 1.3e-125 453.8 285 85.6
Nitab4.5_0000297g0120 Nicotiana tabacum HOM05D005990 ORTHO05D007908 1.7e-125 453.4 284 82.7
Phvul.011G155100 Phaseolus vulgaris HOM05D005990 ORTHO05D007908 2.2e-125 453.0 350 73.4
Ca_11848_v3 Cicer arietinum L. HOM05D005990 ORTHO05D007908 3.7e-125 452.2 362 71.0
Glyma.12G147300 Glycine max HOM05D005990 ORTHO05D007908 4.8e-125 451.8 355 73.2
Eucgr.F03355 Eucalyptus grandis HOM05D005990 ORTHO05D007908 1.4e-124 450.3 327 78.0
Lalb_Chr01g0006431 Lupinus albus HOM05D005990 ORTHO05D007908 1.4e-124 450.3 291 83.2
Ciclev10009149m.g Citrus clementina HOM05D005990 ORTHO05D007908 1.8e-124 449.9 268 90.3
PGSC0003DMG402019249 Solanum tuberosum HOM05D005990 ORTHO05D007908 2.4e-124 449.5 348 71.6
Lj8A160T67 Lonicera japonica HOM05D005990 ORTHO05D007908 5.4e-124 448.4 264 90.2
VMungo1127G2019 Vigna mungo HOM05D005990 ORTHO05D007908 5.4e-124 448.4 357 72.0
Hma1.2p1_1143F.1_g261060 Hydrangea macrophylla HOM05D005990 ORTHO05D007908 9.1e-124 447.6 260 90.0
Medtr8g464410 Medicago truncatula HOM05D005990 ORTHO05D007908 9.1e-124 447.6 360 70.3
Cc05_g12670 Coffea canephora HOM05D005990 ORTHO05D007908 3.5e-123 445.7 332 75.6
THA.LOC104811848 Tarenaya hassleriana HOM05D005990 ORTHO05D007908 3.5e-123 445.7 285 82.8
MSTRG.15206 Avicennia marina HOM05D005990 ORTHO05D007908 8.5e-122 441.0 357 70.3
ATR0751G163 Amborella trichopoda HOM05D005990 ORTHO05D007908 1.5e-121 440.3 328 75.3
PSO210G5100 Papaver somniferum HOM05D005990 ORTHO05D007908 1.5e-121 440.3 362 70.4
BcaB05g22125 Brassica carinata HOM05D005990 ORTHO05D007908 2.5e-121 439.5 286 82.5
CDE05G0179 Ceratophyllum demersum HOM05D005990 ORTHO05D007908 2.5e-121 439.5 287 81.2
Sp6g16330 Schrenkiella parvula HOM05D005990 ORTHO05D007908 4.2e-121 438.7 312 76.9
Migut.M01860 Erythranthe guttata HOM05D005990 ORTHO05D007908 5.5e-121 438.3 327 74.3
AL8G29620 Arabidopsis lyrata HOM05D005990 ORTHO05D007908 2.1e-120 436.4 367 69.5
AT5G54290 Arabidopsis thaliana HOM05D005990 ORTHO05D007908 2.7e-120 436.0 311 78.1
Aa31LG3G10250 Aethionema arabicum HOM05D005990 ORTHO05D007908 4.7e-120 435.3 310 76.5
CARHR267580 Cardamine hirsuta HOM05D005990 ORTHO05D007908 4.7e-120 435.3 286 82.2
BcaC03g14345 Brassica carinata HOM05D005990 ORTHO05D007908 6.1e-120 434.9 353 70.0
Thhalv10013940m.g Eutrema salsugineum HOM05D005990 ORTHO05D007908 6.1e-120 434.9 286 81.8
A02p10420 Brassica napus HOM05D005990 ORTHO05D007908 1.0e-119 434.1 354 70.1
FAN21G0316 Fragaria x ananassa HOM05D005990 ORTHO05D007908 1.4e-119 433.7 387 66.4
C02p17170 Brassica napus HOM05D005990 ORTHO05D007908 3.0e-119 432.6 350 70.3
BolC2t07817H Brassica oleracea HOM05D005990 ORTHO05D007908 8.8e-119 431.0 268 84.3
Os11g0140800 Oryza sativa ssp. japonica HOM05D005990 ORTHO05D007908 1.5e-118 430.3 284 79.6
Carub.0008s1464 Capsella rubella HOM05D005990 ORTHO05D007908 9.8e-118 427.6 352 69.6
BraA02t06108Z Brassica rapa HOM05D005990 ORTHO05D007908 2.2e-117 426.4 375 66.1
unitig_46.g18327 Utricularia gibba HOM05D005990 ORTHO05D007908 1.4e-116 423.7 289 78.2
Zm00001eb093260 Zea mays HOM05D005990 ORTHO05D007908 1.8e-116 423.3 285 78.2
MBI02_g35910_MAGBIO Magnolia biondii HOM05D005990 ORTHO05D007908 3.1e-116 422.5 291 78.7
Peaxi162Scf01216g00051 Petunia axillaris HOM05D005990 ORTHO05D007908 1.6e-115 420.2 290 77.9
HPP92_018217 Vanilla planifolia HOM05D005990 ORTHO05D007908 9.5e-113 411.0 285 78.6
SalBow7G3955 Salvia bowleyana HOM05D005990 ORTHO05D007908 4.7e-112 408.7 375 62.7
SGA_v2.0_scaffold9G04955 Striga asiatica HOM05D005990 ORTHO05D007908 4.4e-110 402.1 286 75.2
DCAR_008702 Daucus carota HOM05D005990 ORTHO05D007908 4.9e-109 398.7 282 78.0
Haze_09528 Corylus avellana HOM05D005990 ORTHO05D007908 1.1e-108 397.5 329 72.0
vmacro09559 Vaccinium macrocarpon HOM05D005990 ORTHO05D007908 5.4e-108 395.2 287 76.3
QL08p017936 Quercus lobata HOM05D005990 ORTHO05D007908 2.0e-107 393.3 312 73.1
Ah.04g165420 Amaranthus hybridus HOM05D005990 ORTHO05D007908 4.6e-107 392.1 320 70.6
TWI38G1683 Tripterygium wilfordii HOM05D005990 ORTHO05D007908 1.5e-105 387.1 311 70.4
FAN16G0288 Fragaria x ananassa HOM05D005990 ORTHO05D007908 7.3e-105 384.8 351 66.1
arahy.Tifrunner.gnm1.ann1.3KJ3XQ Arachis hypogaea HOM05D005990 ORTHO05D007908 9.5e-105 384.4 316 71.2
SMO119G0067 Selaginella moellendorffii HOM05D005990 ORTHO05D007908 3.6e-104 382.5 274 74.1
arahy.Tifrunner.gnm1.ann1.NX1DPE Arachis hypogaea HOM05D005990 ORTHO05D007908 6.1e-104 381.7 393 61.1
EL10Ac4g08059 Beta vulgaris HOM05D005990 ORTHO05D007908 5.2e-103 378.6 353 64.3
AagrBONN_evm.TU.Sc2ySwM_344.980 Anthoceros agrestis HOM05D005990 ORTHO05D007908 1.3e-101 374.0 321 66.0
Mapoly0093s0077 Marchantia polymorpha HOM05D005990 ORTHO05D007908 5.4e-100 368.6 261 75.1
PSO832G2166 Papaver somniferum HOM05D005990 ORTHO05D007908 2.7e-99 366.3 327 67.3
MBI02_g10990_MAGBIO Magnolia biondii HOM05D005990 ORTHO05D007908 8.1e-96 354.8 223 83.9
Oeu055680.2 Olea europaea HOM05D005990 ORTHO05D007908 1.1e-95 354.4 360 60.3
Pp3c15_16730 Physcomitrium patens HOM05D005990 ORTHO05D007908 3.1e-95 352.8 288 65.6
CAN.G162.104 Capsicum annuum HOM05D005990 ORTHO05D007908 7.8e-91 338.2 262 69.8
TPR.G39565 Trifolium pratense HOM05D005990 ORTHO05D007908 2.3e-90 336.7 240 75.8
Hma1.2p1_1143F.1_g261070 Hydrangea macrophylla HOM05D005990 ORTHO05D007908 4.7e-88 328.9 192 88.0
Psat0s617g0120 Pisum sativum HOM05D005990 ORTHO05D007908 4.0e-87 325.9 284 67.3
CBR_g16976 Chara braunii HOM05D005990 ORTHO05D007908 3.3e-81 306.2 256 63.7
Actinidia18746 Actinidia chinensis HOM05D005990 ORTHO05D007908 2.4e-76 290.0 306 58.2
MBI02_g26442_MAGBIO Magnolia biondii HOM05D005990 ORTHO05D007908 2.3e-74 283.5 243 66.7
Cre07.g357800 Chlamydomonas reinhardtii HOM05D005990 ORTHO05D007908 1.4e-68 264.2 274 53.6
PRCOL_00006006 Prasinoderma coloniale HOM05D005990 ORTHO05D007908 1.2e-67 261.2 245 59.6
AagrBONN_evm.TU.Sc2ySwM_117.2025 Anthoceros agrestis HOM05D005990 ORTHO05D007908 1.8e-63 247.3 336 50.0
MCO16G378 Micromonas commoda HOM05D005990 ORTHO05D007908 6.4e-61 238.8 276 51.8
C03p17200 Brassica napus HOM05D005990 ORTHO05D007908 7.1e-60 235.3 230 62.2
BolC3t14134H Brassica oleracea HOM05D005990 ORTHO05D007908 9.0e-55 218.4 230 59.6
Os12g0137300 Oryza sativa ssp. japonica HOM05D005990 ORTHO05D007908 4.5e-54 216.1 161 73.3
BcaC01g06300 Brassica carinata HOM05D005990 ORTHO05D007908 1.5e-49 201.1 140 79.3
SEGI_00968 Sequoiadendron giganteum HOM05D005990 ORTHO05D007908 4.1e-47 193.0 138 75.4
Hma1.2p1_1302F.1_g274280 Hydrangea macrophylla HOM05D005990 ORTHO05D007908 4.1e-39 166.4 98 87.8
Haze_08411 Corylus avellana HOM05D005990 ORTHO05D007908 3.8e-37 159.8 142 67.6
MD03G1219200 Malus domestica HOM05D005990 ORTHO05D007908 8.5e-37 158.7 204 54.4
SEGI_31484 Sequoiadendron giganteum HOM05D005990 ORTHO05D007908 6.7e-34 149.1 93 83.9
CSS0033016 Camellia sinensis var. sinensis HOM05D005990 ORTHO05D043356 3.7e-32 143.3 157 56.7
CSS0043364 Camellia sinensis var. sinensis HOM05D005990 ORTHO05D043356 1.1e-31 141.7 157 56.1
HPP92_027973 Vanilla planifolia HOM05D005990 ORTHO05D007908 1.5e-30 137.9 118 66.9
HPP92_027972 Vanilla planifolia HOM05D005990 ORTHO05D007908 1.1e-20 105.1 80 70.0
Sopen08g023060 Solanum pennellii HOM05D003334 ORTHO05D004076 1.1e-17 95.1 96 61.5
Solyc05g150137.1 Solanum lycopersicum HOM05D005990 ORTHO05D391672 4.8e-16 89.7 60 78.3
HanXRQChr12g0381681 Helianthus annuus HOM05D005990 ORTHO05D221923 1.7e-13 81.3 225 32.9
Sopen10g004100 Solanum pennellii HOM05D005990 ORTHO05D000950 2.7e-11 73.9 43 88.4
MBI07_g21055_MAGBIO Magnolia biondii HOM05D002560 ORTHO05D022192 2.0e-06 57.8 41 75.6
MBI17_g13390_MAGBIO Magnolia biondii HOM05D008002 ORTHO05D010148 5.9e-06 56.2 29 100.0


User provided reference genes

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