Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
PGR031G1897 Punica granatum HOM05D004452 ORTHO05D005358 0.0e+00 1536.9 801 100.0
Eucgr.F02336 Eucalyptus grandis HOM05D004452 ORTHO05D005358 0.0e+00 1081.2 817 70.0
Thecc.08G005800 Theobroma cacao HOM05D004452 ORTHO05D005358 4.2e-302 1041.2 809 67.9
Duzib093G1704 Durio zibethinus HOM05D004452 ORTHO05D005358 3.0e-300 1035.0 809 67.0
GSVIVG01009484001 Vitis vinifera HOM05D004452 ORTHO05D005358 3.2e-294 1015.0 770 68.3
Manes.18G038000 Manihot esculenta HOM05D004452 ORTHO05D005358 1.6e-293 1012.7 807 66.5
vmacro21515 Vaccinium macrocarpon HOM05D004452 ORTHO05D005358 1.7e-292 1009.2 815 66.1
COL.COLO4_26520 Corchorus olitorius HOM05D004452 ORTHO05D005358 2.3e-292 1008.8 809 65.5
Prupe.1G434400 Prunus persica HOM05D004452 ORTHO05D005358 1.1e-291 1006.5 810 65.4
ClCG05G019920 Citrullus lanatus HOM05D004452 ORTHO05D005358 1.9e-291 1005.7 815 63.8
CSS0026728 Camellia sinensis var. sinensis HOM05D004452 ORTHO05D005358 3.3e-291 1005.0 782 66.4
CiPaw.15G055600 Carya illinoinensis HOM05D004452 ORTHO05D005358 7.3e-291 1003.8 813 65.8
Rhsim06G0050800 Rhododendron simsii HOM05D004452 ORTHO05D005358 2.8e-290 1001.9 828 64.6
Actinidia23285 Actinidia chinensis HOM05D004452 ORTHO05D005358 6.2e-290 1000.7 813 64.9
Cfa018088 Carpinus fangiana HOM05D004452 ORTHO05D005358 8.1e-290 1000.3 810 64.8
TAR381G1434 Trochodendron aralioides HOM05D004452 ORTHO05D005358 3.1e-289 998.4 801 65.3
RcHm_v2.0_Chr6g0308041 Rosa chinensis HOM05D004452 ORTHO05D005358 4.9e-287 991.1 809 64.0
Ciclev10000290m.g Citrus clementina HOM05D004452 ORTHO05D005358 2.4e-286 988.8 812 64.0
QL02p004676 Quercus lobata HOM05D004452 ORTHO05D005358 5.5e-286 987.6 814 66.1
TWI56G0235 Tripterygium wilfordii HOM05D004452 ORTHO05D005358 5.5e-286 987.6 809 66.0
Gohir.D05G206300 Gossypium hirsutum HOM05D004452 ORTHO05D005358 7.1e-286 987.3 808 65.2
MELO3C016756.2 Cucumis melo HOM05D004452 ORTHO05D005358 9.3e-286 986.9 816 63.2
FAN15G1326 Fragaria x ananassa HOM05D004452 ORTHO05D005358 7.9e-285 983.8 809 65.3
FvH4_2g34320 Fragaria vesca HOM05D004452 ORTHO05D005358 1.3e-284 983.0 809 65.0
TWI36G0852 Tripterygium wilfordii HOM05D004452 ORTHO05D005358 1.8e-284 982.6 809 65.8
CsaV3_4G034360 Cucumis sativus L. HOM05D004452 ORTHO05D005358 6.7e-284 980.7 815 62.8
Atru.chr13.704 Acer truncatum HOM05D004452 ORTHO05D005358 8.7e-284 980.3 811 64.7
FAN20G1510 Fragaria x ananassa HOM05D004452 ORTHO05D005358 8.7e-284 980.3 809 65.1
FAN27G2914 Fragaria x ananassa HOM05D004452 ORTHO05D005358 1.5e-283 979.5 809 65.1
Gorai.009G212700 Gossypium raimondii HOM05D004452 ORTHO05D005358 1.3e-282 976.5 808 64.9
MD15G1081700 Malus domestica HOM05D004452 ORTHO05D005358 6.2e-282 974.2 811 63.6
Nn5g30286 Nelumbo nucifera HOM05D004452 ORTHO05D005358 1.8e-281 972.6 791 63.8
Sed0009272 Sechium edule HOM05D004452 ORTHO05D005358 5.3e-281 971.1 818 62.2
Cc10_g04060 Coffea canephora HOM05D004452 ORTHO05D005358 7.6e-280 967.2 789 63.2
Dinv39307 Davidia involucrata HOM05D004452 ORTHO05D005358 1.7e-279 966.1 784 65.8
FAN24G0195 Fragaria x ananassa HOM05D004452 ORTHO05D005358 2.9e-279 965.3 858 61.5
Lalb_Chr11g0062611 Lupinus albus HOM05D004452 ORTHO05D005358 3.8e-279 964.9 818 61.9
Lj4A59T44 Lonicera japonica HOM05D004452 ORTHO05D005358 2.5e-278 962.2 780 64.2
Potri.014G028100 Populus trichocarpa HOM05D004452 ORTHO05D005358 1.3e-276 956.4 809 62.9
Sabra14G0019200 Salix brachista HOM05D004452 ORTHO05D005358 5.1e-276 954.5 810 62.8
THA.LOC104822853 Tarenaya hassleriana HOM05D004452 ORTHO05D005358 6.7e-276 954.1 812 62.9
Glyma.06G040600 Glycine max HOM05D004452 ORTHO05D005358 7.4e-275 950.7 814 62.5
CANSAT11G1000 Cannabis sativa HOM05D004452 ORTHO05D005358 2.8e-274 948.7 812 63.8
PSO170G2588 Papaver somniferum HOM05D004452 ORTHO05D005358 4.8e-274 948.0 786 63.4
PSO210G0441 Papaver somniferum HOM05D004452 ORTHO05D005358 9.0e-273 943.7 786 63.2
Glyma.04G039400 Glycine max HOM05D004452 ORTHO05D005358 2.6e-272 942.2 814 62.0
Phvul.009G065600 Phaseolus vulgaris HOM05D004452 ORTHO05D005358 2.6e-272 942.2 814 63.1
Cpa.g.sc49.27 Carica papaya HOM05D004452 ORTHO05D005358 7.6e-272 940.6 810 63.0
Lj1g0004160 Lotus japonicus HOM05D004452 ORTHO05D005358 1.9e-270 936.0 814 61.4
arahy.Tifrunner.gnm1.ann1.UAD7VL Arachis hypogaea HOM05D004452 ORTHO05D005358 5.5e-270 934.5 819 63.1
MBI06_g02568_MAGBIO Magnolia biondii HOM05D004452 ORTHO05D005358 7.2e-270 934.1 795 61.6
Medtr3g101790 Medicago truncatula HOM05D004452 ORTHO05D005358 1.6e-269 932.9 820 60.6
CAN.G1030.10 Capsicum annuum HOM05D004452 ORTHO05D005358 3.5e-269 931.8 803 61.6
arahy.Tifrunner.gnm1.ann1.Y5ZCTQ Arachis hypogaea HOM05D004452 ORTHO05D005358 6.1e-269 931.0 819 62.9
PGSC0003DMG400007967 Solanum tuberosum HOM05D004452 ORTHO05D005358 7.9e-269 930.6 799 62.5
Ca_15944_v3 Cicer arietinum L. HOM05D004452 ORTHO05D005358 6.7e-268 927.5 820 60.1
VMungo1309G1308 Vigna mungo HOM05D004452 ORTHO05D005358 7.4e-267 924.1 814 62.5
Lsat_1_v5_gn_1_21181 Lactuca sativa HOM05D004452 ORTHO05D005358 9.7e-267 923.7 809 61.4
Sc15g0006090 Simmondsia chinensis HOM05D004452 ORTHO05D005358 4.8e-266 921.4 815 60.2
Nitab4.5_0002760g0030 Nicotiana tabacum HOM05D004452 ORTHO05D005358 1.8e-265 919.5 803 61.5
Aqoxy5G01224 Aquilegia oxysepala HOM05D004452 ORTHO05D005358 6.9e-265 917.5 781 60.8
Solyc04g078830.3 Solanum lycopersicum HOM05D004452 ORTHO05D005358 3.4e-264 915.2 803 61.3
TPR.G24198 Trifolium pratense HOM05D004452 ORTHO05D005358 5.9e-264 914.4 791 61.7
Oeu043579.4 Olea europaea HOM05D004452 ORTHO05D005358 7.7e-264 914.1 794 59.2
Nitab4.5_0000287g0200 Nicotiana tabacum HOM05D004452 ORTHO05D005358 8.5e-263 910.6 803 61.4
Gohir.A05G203100 Gossypium hirsutum HOM05D004452 ORTHO05D005358 4.2e-262 908.3 730 66.6
HanXRQChr02g0039511 Helianthus annuus HOM05D004452 ORTHO05D005358 5.7e-259 897.9 800 61.9
Migut.N02714 Erythranthe guttata HOM05D004452 ORTHO05D005358 1.3e-258 896.7 800 60.9
Hma1.2p1_2046F.1_g312410 Hydrangea macrophylla HOM05D004452 ORTHO05D005358 1.3e-258 896.7 817 60.1
MSTRG.24335 Avicennia marina HOM05D004452 ORTHO05D005358 1.7e-258 896.3 795 60.9
DCAR_019448 Daucus carota HOM05D004452 ORTHO05D005358 2.8e-258 895.6 796 61.6
Psat5g042600 Pisum sativum HOM05D004452 ORTHO05D005358 3.7e-258 895.2 796 60.4
Aa31LG9G12980 Aethionema arabicum HOM05D004452 ORTHO05D005358 1.8e-257 892.9 809 60.9
Peaxi162Scf00252g00221 Petunia axillaris HOM05D004452 ORTHO05D005358 2.2e-255 885.9 794 60.8
ECA247G0253 Erigeron canadensis HOM05D004452 ORTHO05D005358 2.1e-253 879.4 806 60.5
AUR62041892 Chenopodium quinoa HOM05D004452 ORTHO05D005358 3.6e-253 878.6 782 61.0
EL10Ac1g01836 Beta vulgaris HOM05D004452 ORTHO05D005358 1.5e-251 873.2 781 60.6
Hund23866 Selenicereus undatus HOM05D004452 ORTHO05D005358 9.7e-251 870.5 791 60.3
AT5G42920 Arabidopsis thaliana HOM05D004452 ORTHO05D005358 1.3e-250 870.2 814 59.6
BcaC06g31738 Brassica carinata HOM05D004452 ORTHO05D005358 6.3e-250 867.8 813 59.8
SGA_v2.0_scaffold28G11777 Striga asiatica HOM05D004452 ORTHO05D005358 2.4e-249 865.9 789 59.3
Carub.0008s0587 Capsella rubella HOM05D004452 ORTHO05D005358 4.1e-249 865.1 815 59.1
AL8G17930 Arabidopsis lyrata HOM05D004452 ORTHO05D005358 9.1e-249 864.0 812 59.2
CARHR181170 Cardamine hirsuta HOM05D004452 ORTHO05D005358 2.0e-248 862.8 814 59.6
A06p48170 Brassica napus HOM05D004452 ORTHO05D005358 2.9e-247 859.0 813 60.3
Thhalv10003147m.g Eutrema salsugineum HOM05D004452 ORTHO05D005358 3.8e-247 858.6 814 58.6
BcaC02g10792 Brassica carinata HOM05D004452 ORTHO05D005358 2.5e-246 855.9 815 60.4
C04p25060 Brassica napus HOM05D004452 ORTHO05D005358 2.5e-246 855.9 815 60.4
BolC4t24007H Brassica oleracea HOM05D004452 ORTHO05D005358 2.5e-246 855.9 815 60.4
BraA06t27686Z Brassica rapa HOM05D004452 ORTHO05D005358 1.2e-245 853.6 813 60.1
Sp2g07660 Schrenkiella parvula HOM05D004452 ORTHO05D005358 6.1e-245 851.3 813 58.7
ATR1126G044 Amborella trichopoda HOM05D004452 ORTHO05D005358 7.5e-235 817.8 806 55.5
SHI08268 Sapria himalayana HOM05D004452 ORTHO05D005358 9.4e-230 800.8 818 54.5
CDE08G0013 Ceratophyllum demersum HOM05D004452 ORTHO05D005358 1.6e-229 800.0 792 56.3
Dinv35952 Davidia involucrata HOM05D004452 ORTHO05D005358 1.7e-218 763.5 652 64.9
Zm00001eb255990 Zea mays HOM05D004452 ORTHO05D005358 9.5e-214 747.7 784 54.5
CDE04G2017 Ceratophyllum demersum HOM05D004452 ORTHO05D005358 1.1e-196 691.0 638 60.0
SalBow8G3632 Salvia bowleyana HOM05D004452 ORTHO05D005358 4.6e-192 675.6 641 57.4
SalBow8G0374 Salvia bowleyana HOM05D004452 ORTHO05D005358 1.7e-191 673.7 641 57.3
CiPaw.16G042900 Carya illinoinensis HOM05D004452 ORTHO05D005358 7.8e-184 648.3 484 69.4
Lalb_Chr08g0245391 Lupinus albus HOM05D004452 ORTHO05D005358 4.8e-173 612.5 492 67.5
Mapoly0012s0112 Marchantia polymorpha HOM05D004452 ORTHO05D005358 6.9e-172 608.6 842 45.2
CANSAT11G0118 Cannabis sativa HOM05D004452 ORTHO05D005358 3.4e-171 606.3 482 66.2
Phvul.001G022500 Phaseolus vulgaris HOM05D004452 ORTHO05D005358 9.6e-166 588.2 471 65.2
Glyma.17G241800 Glycine max HOM05D004452 ORTHO05D005358 1.8e-164 583.9 495 62.0
Sopen04g032430 Solanum pennellii HOM05D004452 ORTHO05D005358 1.8e-164 583.9 556 57.2
Glyma.14G083300 Glycine max HOM05D004452 ORTHO05D005358 5.3e-164 582.4 499 62.3
THA.LOC104812571 Tarenaya hassleriana HOM05D004452 ORTHO05D005358 1.9e-161 573.9 489 64.8
VMungo0647G1811 Vigna mungo HOM05D004452 ORTHO05D005358 1.2e-160 571.2 472 63.8
Sc02g0007190 Simmondsia chinensis HOM05D004452 ORTHO05D005358 6.0e-160 568.9 458 66.4
arahy.Tifrunner.gnm1.ann1.IXK305 Arachis hypogaea HOM05D004452 ORTHO05D005358 9.6e-158 561.6 490 59.8
arahy.Tifrunner.gnm1.ann1.VB8FSW Arachis hypogaea HOM05D004452 ORTHO05D005358 9.6e-158 561.6 490 59.8
Oeu023860.1 Olea europaea HOM05D004452 ORTHO05D005358 5.1e-151 539.3 472 61.0
Sed0026470 Sechium edule HOM05D004452 ORTHO05D005358 3.3e-150 536.6 483 60.9
Os02g0767100 Oryza sativa ssp. japonica HOM05D004452 ORTHO05D005358 2.6e-147 526.9 461 62.3
Sp1g34090 Schrenkiella parvula HOM05D004452 ORTHO05D005358 1.0e-146 525.0 460 61.5
HPP92_016717 Vanilla planifolia HOM05D004452 ORTHO05D005358 6.5e-146 522.3 727 44.2
AT1G45233 Arabidopsis thaliana HOM05D004452 ORTHO05D005358 2.1e-144 517.3 459 61.4
Thhalv10011479m.g Eutrema salsugineum HOM05D004452 ORTHO05D005358 2.1e-144 517.3 458 60.9
AL1G52910 Arabidopsis lyrata HOM05D004452 ORTHO05D005358 6.1e-144 515.8 458 59.6
Carub.0001s3568 Capsella rubella HOM05D004452 ORTHO05D005358 3.3e-142 510.0 459 59.3
AUR62038817 Chenopodium quinoa HOM05D004452 ORTHO05D005358 2.6e-139 500.4 498 54.2
CARHR036370 Cardamine hirsuta HOM05D004452 ORTHO05D005358 4.5e-139 499.6 460 60.2
Aa31sc108G100 Aethionema arabicum HOM05D004452 ORTHO05D005358 1.0e-138 498.4 470 58.9
A10p06900 Brassica napus HOM05D004452 ORTHO05D005358 2.9e-138 496.9 466 58.2
SMO356G0003 Selaginella moellendorffii HOM05D004452 ORTHO05D005358 3.8e-138 496.5 705 45.8
BraA10t42942Z Brassica rapa HOM05D004452 ORTHO05D005358 2.5e-137 493.8 458 59.0
MSTRG.25087 Avicennia marina HOM05D004452 ORTHO05D005358 1.8e-135 487.6 412 62.9
unitig_749.g13678 Utricularia gibba HOM05D004452 ORTHO05D005358 1.8e-135 487.6 693 44.4
C06p01470 Brassica napus HOM05D004452 ORTHO05D005358 9.1e-132 475.3 456 56.6
BcaC08g42910 Brassica carinata HOM05D004452 ORTHO05D005358 1.2e-131 474.9 456 56.6
BolC6t35279H Brassica oleracea HOM05D004452 ORTHO05D005358 1.3e-130 471.5 456 56.4
AagrBONN_evm.TU.Sc2ySwM_228.4151 Anthoceros agrestis HOM05D004452 ORTHO05D005358 2.8e-125 453.8 746 40.9
Pp3c7_25670 Physcomitrium patens HOM05D004452 ORTHO05D005358 1.1e-124 451.8 758 40.1
unitig_26.g10021 Utricularia gibba HOM05D002518 ORTHO05D002630 6.5e-122 442.6 469 53.5
Nn7g37344 Nelumbo nucifera HOM05D004452 ORTHO05D005358 1.8e-116 424.5 321 70.7
BcaB07g33871 Brassica carinata HOM05D004452 ORTHO05D005358 2.4e-116 424.1 466 52.8
SEGI_30975 Sequoiadendron giganteum HOM05D004452 ORTHO05D005358 1.5e-102 378.3 312 65.7
AagrBONN_evm.TU.Sc2ySwM_117.2784 Anthoceros agrestis HOM05D004452 ORTHO05D005358 1.9e-92 344.7 465 42.8
Potri.002G125300 Populus trichocarpa HOM05D004452 ORTHO05D005358 3.5e-91 340.5 399 50.9
TAR625G1031 Trochodendron aralioides HOM05D004452 ORTHO05D005358 1.0e-90 339.0 260 69.2
Nn3g17073 Nelumbo nucifera HOM05D004452 ORTHO05D005358 1.0e-82 312.4 223 75.3
MD08G1099200 Malus domestica HOM05D004452 ORTHO05D005358 2.2e-77 294.7 197 78.7
CBR_g24409 Chara braunii HOM05D004452 ORTHO05D005358 5.1e-58 230.3 359 39.3
SalBow8G2832 Salvia bowleyana HOM05D004452 ORTHO05D005358 3.3e-57 227.6 159 72.3
SalBow8G5418 Salvia bowleyana HOM05D004452 ORTHO05D005358 3.3e-57 227.6 159 72.3
MCO13G423 Micromonas commoda HOM05D004452 ORTHO05D005358 9.6e-57 226.1 757 29.6
MD08G1099300 Malus domestica HOM05D004452 ORTHO05D005358 1.2e-51 209.1 147 66.7
SEGI_02411 Sequoiadendron giganteum HOM05D004452 ORTHO05D000001 2.8e-48 198.0 356 38.8
Cre17.g705550 Chlamydomonas reinhardtii HOM05D004452 ORTHO05D005358 7.6e-46 189.9 442 31.0
Dinv35953 Davidia involucrata HOM05D004452 ORTHO05D005358 4.8e-40 170.6 135 60.7
MD08G1099500 Malus domestica HOM05D004452 ORTHO05D005358 5.3e-39 167.2 128 63.3
Aa31LG7G10550 Aethionema arabicum HOM05D004452 ORTHO05D005358 3.6e-27 127.9 90 66.7
Nn3g18530 Nelumbo nucifera HOM05D004452 ORTHO05D005358 7.2e-20 103.6 157 39.5
Nn3g18532 Nelumbo nucifera HOM05D004452 ORTHO05D005358 7.2e-20 103.6 157 39.5
Aa31LG7G10540 Aethionema arabicum HOM05D004452 ORTHO05D005358 8.8e-18 96.7 87 65.5
Actinidia22636 Actinidia chinensis HOM05D004452 ORTHO05D005358 1.1e-15 89.7 70 55.7
TAR625G1460 Trochodendron aralioides HOM05D004452 ORTHO05D005358 3.5e-14 84.7 96 44.8
CARHR174670 Cardamine hirsuta HOM05D004452 ORTHO05D005358 2.1e-11 75.5 54 64.8
PRCOL_00004305 Prasinoderma coloniale HOM05D004452 ORTHO05D005358 1.3e-08 66.2 187 28.3


User provided reference genes

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